Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03005 and BPUM_1748
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:32
# Commandline: needle
# -asequence dna-align/BSNT_03005.1.24716.seq
# -bsequence dna-align/BPUM_1748___xynD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03005-BPUM_1748___xynD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03005-BPUM_1748___xynD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03005
# 2: BPUM_1748___xynD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1556
# Identity: 1006/1556 (64.7%)
# Similarity: 1006/1556 (64.7%)
# Gaps: 313/1556 (20.1%)
# Score: 3993.5
#
#
#=======================================
BSNT_03005 0 -------------------------------------------------- 0
BPUM_1748___x 1 ATGAGAAAGAGGATGAAGTGCGGTTTATGTTTTTTAATTCTAGCTTTGGT 50
BSNT_03005 0 -------------------------------------------------- 0
BPUM_1748___x 51 ACTAAGCTGTATACCCGTATATGATGCGAGTGCAGCAAGTACCCCCATTG 100
BSNT_03005 0 -------------------------------------------------- 0
BPUM_1748___x 101 CAAAACGAGTAGGAAATGCAAATCCGCTCATAGACCATCACCTGGGAGCA 150
BSNT_03005 0 -------------------------------------------------- 0
BPUM_1748___x 151 GATCCGTTTGCGCTCACCTATAACGGCAGAGTGTACATTTATATGTCGAG 200
BSNT_03005 0 -------------------------------------------------- 0
BPUM_1748___x 201 TGATGACTATGAATATCAAAGCAATGGAACGATTAAGGACAATTCTTTTG 250
BSNT_03005 1 --------------------------------------ATGGTGAACTGG 12
||||||||||||
BPUM_1748___x 251 CGAATTTGAATAGGGTCTTTGTCATCTCTTCGGCAGATATGGTGAACTGG 300
BSNT_03005 13 ACAGACCACGGAGCCATTCCAGTAGCAGGTGCCAATGGAGCTAATGGAGG 62
|||||.||||||||.||||||||||||||.||.|||||.||.|||||.||
BPUM_1748___x 301 ACAGATCACGGAGCGATTCCAGTAGCAGGCGCAAATGGGGCAAATGGCGG 350
BSNT_03005 63 CCGTGGAATTGCAAAATGGGCAGGTGCGTCATGGGCACCGTCAATC---- 108
....||.|||||.|||||||||||.||.||.||||| ||.|.|
BPUM_1748___x 351 GAAAGGGATTGCCAAATGGGCAGGCGCTTCTTGGGC----TCCAGCGGCT 396
BSNT_03005 109 GCAGTTAAAAAAATTAATGGCAAGGATAAATTCTTCCTTTATTTCGCAAA 158
||.||.||.||.||.|||||.|||||||||||.|||||||||||.||.||
BPUM_1748___x 397 GCGGTGAAGAAGATCAATGGGAAGGATAAATTTTTCCTTTATTTTGCTAA 446
BSNT_03005 159 CAGCGGCGGAGGTATCGGGGTTCTCACCGCAGACAGCCCGATTGGTCCAT 208
||||||||||||.||.||.||..|.||.||.||.||.|||||||||||.|
BPUM_1748___x 447 CAGCGGCGGAGGGATTGGCGTCTTGACAGCGGATAGTCCGATTGGTCCTT 496
BSNT_03005 209 GGACCGACCCAATCGGAAAACCGCTCGTAACGCCAAGTACGCCAGGAATG 258
|||..|||||.|||||||||.|||||||.||.||||.|||.|||||||||
BPUM_1748___x 497 GGAAAGACCCTATCGGAAAAGCGCTCGTCACACCAAATACACCAGGAATG 546
BSNT_03005 259 TCTGGTGTTGTATGGCTTTTTGATCCGGCAGTATTTGTAAATGACGACGG 308
||.||||||||||||||.||||||||.||.|||||||||.||||.|||||
BPUM_1748___x 547 TCCGGTGTTGTATGGCTGTTTGATCCAGCTGTATTTGTAGATGATGACGG 596
BSNT_03005 309 CACCGGTTACCTGTATGCTGGCGGAGGCGTTCCTGGCGGTTCAAATCCAA 358
.||||||||.||.|||||.||||||||||||||.||||||||||||||||
BPUM_1748___x 597 GACCGGTTATCTATATGCCGGCGGAGGCGTTCCAGGCGGTTCAAATCCAA 646
BSNT_03005 359 CGCAGGGACAATGGGCCAATCCTAAAACGGCTAGAGTCATAAAATTGGGG 408
|.|||||.||||||||||||||||||||.||.|||||..|.||..|.|||
BPUM_1748___x 647 CACAGGGGCAATGGGCCAATCCTAAAACAGCAAGAGTTCTGAAGCTAGGG 696
BSNT_03005 409 CCTGATATGACGAGTGTTGTTGGAAGTGCATCTACAATTGATGCGCCTTT 458
|||||.|||||.|||||.|..||.||.|||||.||.||||||||.|||||
BPUM_1748___x 697 CCTGACATGACAAGTGTGGCCGGCAGCGCATCAACCATTGATGCTCCTTT 746
BSNT_03005 459 CATGTTTGAAGATTC-GGGATTGCACAAGTATAACGGAACATATTATTAC 507
.|||||||||||||| |||| ||||.|||||||||||.||.|||||.||.
BPUM_1748___x 747 TATGTTTGAAGATTCAGGGA-TGCATAAGTATAACGGTACCTATTACTAT 795
BSNT_03005 508 TCCTATTGCATTAATTTCGGCGGCACGCACCCGGCCGATAAACCCCCGGG 557
||.||||||||.|||||.||||||.|.|||||.||.||||||||.||.||
BPUM_1748___x 796 TCGTATTGCATCAATTTTGGCGGCTCCCACCCAGCAGATAAACCGCCAGG 845
BSNT_03005 558 TGAGATCGGCTACATGACCAGTTCAAATCCCATGGGTCCCTTTACATATA 607
.||||||||.||.|||||.||.||||.|||.|||||.||||||||.||||
BPUM_1748___x 846 CGAGATCGGTTATATGACGAGCTCAAGTCCAATGGGGCCCTTTACGTATA 895
BSNT_03005 608 GAGGGCATTTCCTGAAAAATCCGGGTGCATTTTTCGGAGGTGGCGGAAAC 657
.|||.||.|||.||||||||||.|||.||||||||||.||.|||||.|||
BPUM_1748___x 896 AAGGACACTTCTTGAAAAATCCAGGTTCATTTTTCGGTGGCGGCGGTAAC 945
BSNT_03005 658 AATCATCATGCTGTTTTCAATTTTAAAAACGAGTGGTATGTGGTGTACCA 707
||.||||||||.||.|||||||||||||||||.||||||||.|||||.||
BPUM_1748___x 946 AACCATCATGCGGTGTTCAATTTTAAAAACGAATGGTATGTCGTGTATCA 995
BSNT_03005 708 CGCGCAAACTGTCAGTTCCGCTCTGTTCGGGGCCGGCAAAGGATACCGTT 757
|.|||||||.||.||.||.||..|.|.|||.||.||.|||||.|||.|.|
BPUM_1748___x 996 CACGCAAACGGTGAGCTCTGCCTTATACGGAGCAGGGAAAGGCTACAGAT 1045
BSNT_03005 758 CTCCCCATATTAATAAGCTGGTGCATAACCCAGATGGATCCATCCAAGAG 807
|||||||.|||||||||||.||.|||||..|.||.||.|||.|.|.||||
BPUM_1748___x 1046 CTCCCCACATTAATAAGCTTGTCCATAATGCGGACGGCTCCCTTCGAGAG 1095
BSNT_03005 808 GTAGCAGCAAATTATGCAGGTGTAACACAGCTTTCCAATTTGAATCCTTA 857
||.|||||.||||.||.|||.||.|.|||||||||.||..|.|||||.||
BPUM_1748___x 1096 GTCGCAGCCAATTTTGAAGGCGTTAAACAGCTTTCTAACCTCAATCCATA 1145
BSNT_03005 858 TAACCGGGTAGAAGCTGAAACGTTTGCTTGGAATGGACGCATTTTGACAG 907
|.|.|||||||||||||||||.||.||||||||||||||||||||.||||
BPUM_1748___x 1146 TCAGCGGGTAGAAGCTGAAACATTCGCTTGGAATGGACGCATTTTAACAG 1195
BSNT_03005 908 AGAAGTCCACAGCACCCGGCGGGCCAGTAAATAATCAGCATGTAACAAGC 957
||...|||.|||||||.||.||||||||.|||||.||||||||.||||.|
BPUM_1748___x 1196 AGGCTTCCTCAGCACCTGGTGGGCCAGTCAATAACCAGCATGTCACAAAC 1245
BSNT_03005 958 ATTCAAAATGGAGACTGGATTGCTGTAGGAAATGCAGACTTCGGAGCGGG 1007
|||||||||||.||.|||.|.|||||..|.||||..||.|||||..|..|
BPUM_1748___x 1246 ATTCAAAATGGCGATTGGGTGGCTGTCAGTAATGTCGATTTCGGCTCTAG 1295
BSNT_03005 1008 CGGTGCCAGGTCATTTAAAGCAAATGTAGCATCCACTTCAGGTTCAGGCG 1057
.||||||||..|.||||||||.||||||||| .|||..|||||||
BPUM_1748___x 1296 GGGTGCCAGAACCTTTAAAGCCAATGTAGCA------GCAGCCTCAGGCG 1339
BSNT_03005 1058 GGAAAATAGAAGTGCGCCTCGACAGTGCTGATGGTAAGCTTGTTGGAACT 1107
|..||||.|||||.||.||.|.||||.|.||.||.|...|.||.|||||.
BPUM_1748___x 1340 GACAAATTGAAGTACGTCTTGGCAGTCCAGACGGCAGAATGGTAGGAACA 1389
BSNT_03005 1108 CTGAATGTGCCTTCAACAGGCGGAGCGCAAACGTGGAGAGAAATAGAAAC 1157
||.|||||.|||||..||||.|| |||| |||.|||||||||||||
BPUM_1748___x 1390 CTCAATGTCCCTTCCTCAGGTGG-----AAAC-TGGCGAGAAATAGAAAC 1433
BSNT_03005 1158 TGCAGTAAGCGGGGCAACAGGTGTGCACAAAGTATTCTTTGTATTTACCG 1207
..||||||.|||||||||.||.||.|||||.|||||.|||||.||.|..|
BPUM_1748___x 1434 AACAGTAAACGGGGCAACGGGAGTACACAACGTATTTTTTGTCTTCAAAG 1483
BSNT_03005 1208 GAACAGGTACAGGAAACTTGTTTCATTTTGATTACTGGCAGTTTACGCAA 1257
|||..||| |..|||.|.||.||.|||||||.||||||||||||.|||
BPUM_1748___x 1484 GAAATGGT---GCCAACCTATTCCAATTTGATTCCTGGCAGTTTACTCAA 1530
BSNT_03005 1258 AGATAG 1263
|||||.
BPUM_1748___x 1531 AGATAA 1536
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