Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02994 and BPUM_1710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:31
# Commandline: needle
# -asequence dna-align/BSNT_02994___parC.1.24716.seq
# -bsequence dna-align/BPUM_1710___parC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02994___parC-BPUM_1710___parC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02994___parC-BPUM_1710___parC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02994___parC
# 2: BPUM_1710___parC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2507
# Identity: 1827/2507 (72.9%)
# Similarity: 1827/2507 (72.9%)
# Gaps: 154/2507 ( 6.1%)
# Score: 6547.5
#
#
#=======================================
BSNT_02994___ 1 TTGTCACAGCCAGAATTATTTCATGATTTACCATTAGAAGAGGTGATCGG 50
.||.||||.|.||||..|||||||||||||||.||||||||.||.|||||
BPUM_1710___p 1 ATGGCACAACAAGAACGATTTCATGATTTACCGTTAGAAGAAGTCATCGG 50
BSNT_02994___ 51 CGACCGTTTTGGACGCTACAGTAAATATATTATTCAAGACAGGGCGCTGC 100
.|||||.|||||.|||||.||||||||||||||.|||||..|.|||||.|
BPUM_1710___p 51 AGACCGATTTGGTCGCTATAGTAAATATATTATCCAAGATCGTGCGCTTC 100
BSNT_02994___ 101 CCGATGCAAGAGACGGATTAAAGCCGGTACAGCGCAGAATTCTGTATGCG 150
|.|||||..||||.|||||||||||.|||||.||.|||||..|.||||||
BPUM_1710___p 101 CAGATGCGCGAGATGGATTAAAGCCTGTACAACGAAGAATCTTATATGCG 150
BSNT_02994___ 151 ATGCATACAGATGGAAACACGTTTGATAAAAACTTCAGAAAAGCGGCCAA 200
|||.|..||||.|||||||||...||||||||||||.|.|||||.||.||
BPUM_1710___p 151 ATGTACGCAGAAGGAAACACGCAAGATAAAAACTTCCGTAAAGCCGCGAA 200
BSNT_02994___ 201 AACGGTCGGTAACGTCATCGGTAACTATCATCCGCACGGTGACAGCTCGG 250
|||.|||||||||||.||.||||||||||||||||||||||||...||.|
BPUM_1710___p 201 AACAGTCGGTAACGTAATTGGTAACTATCATCCGCACGGTGACTCATCTG 250
BSNT_02994___ 251 TTTATGAAGCAATGGTGCGGATGAGCCAGGATTGGAAAGTTCGTAATGTG 300
|||||||||||||||||.|.|||||.||||||||||||||.||.||||||
BPUM_1710___p 251 TTTATGAAGCAATGGTGAGAATGAGTCAGGATTGGAAAGTGCGGAATGTG 300
BSNT_02994___ 301 TTAATCGAAATGCATGGAAACAATGGAAGCATCGACGGAGATCCCCCGGC 350
.|.||.||.|||||||||||.||.||.||.|||||.||.|||||.||.||
BPUM_1710___p 301 CTCATTGAGATGCATGGAAATAACGGGAGTATCGATGGTGATCCGCCTGC 350
BSNT_02994___ 351 AGCCATGCGTTATACAGAGGCACGATTATCTCCGATTGCATCTGAGCTTC 400
.|||||||||||||||||.|||.|..|||||.|||||||.||.|||| ||
BPUM_1710___p 351 TGCCATGCGTTATACAGAAGCAAGGCTATCTGCGATTGCTTCAGAGC-TC 399
BSNT_02994___ 401 TT-CGGGATATTGACAAAAACACGGTTGAATTTGTGCCGAACTTCGATGA 449
|| ..|||..|.|||||..|.|||||.||.|||||..|.|||||.|||||
BPUM_1710___p 400 TTAAAGGACTTAGACAAGGAAACGGTCGAGTTTGTCGCAAACTTTGATGA 449
BSNT_02994___ 450 TACAAGCAAGGAGCCTGTCGTACTCCCGGCGATGTTTCCTAACCTATTGG 499
||||||||||||||||||.||..|.||.||||||||.||.|||||..|.|
BPUM_1710___p 450 TACAAGCAAGGAGCCTGTTGTTTTACCAGCGATGTTCCCAAACCTTCTCG 499
BSNT_02994___ 500 TCAACGGATCTACCGGGATTTCAGCAGGATACGCGACCGACATTCCCCCT 549
|.||.|||||.||.||||||||.||.||.||.||.||.||.||.||.||.
BPUM_1710___p 500 TGAATGGATCAACAGGGATTTCCGCTGGTTATGCCACTGATATCCCGCCG 549
BSNT_02994___ 550 CATCATCTGGGAGAAGTCATTGATGCTGTCATTAAGCGTATTCAAATGCC 599
||||||||.||||||||.|||||||.|||||||||.||.||..||..|||
BPUM_1710___p 550 CATCATCTAGGAGAAGTGATTGATGGTGTCATTAAACGAATCGAACAGCC 599
BSNT_02994___ 600 TTCTTGCTCTGTTGACGAACTCATGGAAGTTATTAAAGGGCCTGATTTTC 649
...|||..|.|||||.||..|.|||..|||.||.|||||.||.|||||.|
BPUM_1710___p 600 GCATTGTACGGTTGAGGATTTAATGACAGTCATCAAAGGTCCAGATTTCC 649
BSNT_02994___ 650 CGACAGGCGGTATTATTCAGGGCGTTGACGGGATAAGAAAAGCTTACGAA 699
|.|||||||||||||||||.||.||.|||||.||.|.|||.|||||.|||
BPUM_1710___p 650 CAACAGGCGGTATTATTCAAGGGGTAGACGGCATTAAAAAGGCTTATGAA 699
BSNT_02994___ 700 ACCGGAAAAGGAAAAATCATTATCCGCGGAAAGGCTGAAATTGAAACAAT 749
||.||.||||||||.|||||.||.||||||||.||.||.||||||||.||
BPUM_1710___p 700 ACAGGCAAAGGAAAGATCATGATTCGCGGAAAAGCGGAGATTGAAACCAT 749
BSNT_02994___ 750 CAGAGGCGGACGAGAACAAATTGTCATTACTGAAATTCCATTTGAAGTAA 799
|.|.||||||||..|.||||||||.||.||.||.|||||||.||||||.|
BPUM_1710___p 750 CCGCGGCGGACGCCAGCAAATTGTGATCACAGAGATTCCATATGAAGTGA 799
BSNT_02994___ 800 ATAAAGCAAACCTTGTAAAAAAAATGGACGAGTTCCGTATTGATAAAAAG 849
|||||||.||||||||.|||||.||||||||||||||.|||||.|.|||.
BPUM_1710___p 800 ATAAAGCCAACCTTGTCAAAAAGATGGACGAGTTCCGAATTGAAAGAAAA 849
BSNT_02994___ 850 GTTGAAGGCATCTCAGAGGTTCGTGATGAAACGGATCGAACAGGGCTGAG 899
||.|||||.||.|||||||||||.||.||.||.||..|.||.||.||..|
BPUM_1710___p 850 GTGGAAGGAATTTCAGAGGTTCGAGACGAGACTGACAGGACTGGCCTTCG 899
BSNT_02994___ 900 AGTGGTCATTGAACTGAAAAAAGAAGCTGATGCCAAAGGTATTTTGAATT 949
|.|.||..|.||.||||||||||||||.|||||.||.|||.|||||||||
BPUM_1710___p 900 AATCGTAGTAGAGCTGAAAAAAGAAGCAGATGCAAATGGTGTTTTGAATT 949
BSNT_02994___ 950 TCTTATACAAAAATACTGATTTGCAGATCACATATAACTTCAATATGGTA 999
|||||||.|||||..|||||.||||.||..||||||||||.|||||||||
BPUM_1710___p 950 TCTTATATAAAAACTCTGATCTGCAAATTCCATATAACTTTAATATGGTA 999
BSNT_02994___ 1000 GCTATCCATAACCGCCGTCCGATGCTGATGA-GCTTGCCGTCTATTTTGG 1048
||.||.|||||.||..|.||.|...|.|||| || ||.|..||||..|.|
BPUM_1710___p 1000 GCGATACATAATCGTAGACCAACCTTAATGACGC-TGACAACTATACTTG 1048
BSNT_02994___ 1049 ATGCATATATCGGACACCAAAAGGAAGTTGTCACAAATCGGTCCGTTTAT 1098
||||||||||.|..||.|||||.|||||.||.||.||.||.||.|..|||
BPUM_1710___p 1049 ATGCATATATTGCCCATCAAAAAGAAGTGGTGACGAACCGTTCAGCATAT 1098
BSNT_02994___ 1099 GAGCTTCAAAAAGCAAAAGACAGACATCATATCGTAGAAGGGCTCATGAA 1148
|||||||.||||||.||.||..|.||.|||||.|||||.||..|.||.||
BPUM_1710___p 1099 GAGCTTCGAAAAGCGAAGGAACGCCACCATATTGTAGATGGATTAATTAA 1148
BSNT_02994___ 1149 AGCTTTGTCTATTTTAGATGAAGTGATTGCAACAATCCGTTCTTCTAGCG 1198
.||..|.|||||.|||||||||||.|||||.||||||||.||.||||..|
BPUM_1710___p 1149 GGCGCTATCTATCTTAGATGAAGTCATTGCCACAATCCGCTCCTCTAATG 1198
BSNT_02994___ 1199 ATAAACGTGACGCTAAAAACAATTTGATCGCGAAATATGAATTTACGGAG 1248
||||..|.||.||.||||||||||||||.|.|||.|||||.|||||.||.
BPUM_1710___p 1199 ATAAGAGAGATGCGAAAAACAATTTGATGGAGAAGTATGACTTTACAGAA 1248
BSNT_02994___ 1249 CCTCAGGCTGAAGCCATCGTGTCATTGCAGCTATATCGTTTAACCAATAC 1298
.|.||..|.|||||.||.|||||..|.|||.|||||||||||||.|||||
BPUM_1710___p 1249 GCACAATCAGAAGCGATTGTGTCCCTCCAGTTATATCGTTTAACGAATAC 1298
BSNT_02994___ 1299 AGATATTACAGCGCTTAAG-GAAGAGGCAGAA-GAGCTCG------GTA- 1339
.|||||||| ||..||||| ||.||.|| ||| ||.||.| |||
BPUM_1710___p 1299 GGATATTAC-GCAATTAAGAGACGAAGC-GAATGAACTTGATGTGCGTAT 1346
BSNT_02994___ 1340 --AAAAAATTGAAGAGCTCGAATC-TATTCTGA-GCAATGATAAAAAACT 1385
.|.||.||||||| | |||| | |.||.||.|||||.||
BPUM_1710___p 1347 AGCAGAACTTGAAGA--------CATATT---AGGTAACGAGAAAAAGCT 1385
BSNT_02994___ 1386 GCTAAAAGTGATTACAAACAGCTT--AAAAGCACTGAAAAAGAAATATGC 1433
|.||||.||.|||||||||||.|| ||||| ||.|||||||.||||||
BPUM_1710___p 1386 GTTAAAGGTCATTACAAACAGTTTGAAAAAG--CTTAAAAAGACATATGC 1433
BSNT_02994___ 1434 AGAT-ACGAGACGCTCCGTGATTGAAGAAAAAATTGAAGAAATTAAAATC 1482
.||| || ||||||||.||.|||||.||||||||||||||||||||.||.
BPUM_1710___p 1434 TGATGAC-AGACGCTCTGTCATTGAGGAAAAAATTGAAGAAATTAAGATT 1482
BSNT_02994___ 1483 AATCTCGAAGTCATGGTTGCATCTGAGGATGTATATGTAACCGTTACGAA 1532
||.||.|||||.|||.||||.||.||.|||||.||.||.||.||.|||||
BPUM_1710___p 1483 AACCTAGAAGTGATGATTGCCTCAGAAGATGTTTACGTCACGGTGACGAA 1532
BSNT_02994___ 1533 GGATGGTTACCTAAAACGGACGAGCCAGCGCTCATTTGCCGCTTCCAACG 1582
|||.||.|||.|.||||||||.|||||.|||||.|.|||.|||||.||||
BPUM_1710___p 1533 GGACGGATACATCAAACGGACAAGCCAACGCTCCTATGCTGCTTCTAACG 1582
BSNT_02994___ 1583 GACAGGACTTCGGAATGAAAGATACGGACAGGATGCTGCATCAGTTTGAA 1632
|..|||||||.||.|||||.|||||.|||.|..||.|.|||||||||||.
BPUM_1710___p 1583 GTAAGGACTTTGGTATGAAGGATACAGACCGCCTGATTCATCAGTTTGAG 1632
BSNT_02994___ 1633 ATGAATACGACAGACGTGCTGCTGCTCTTTACGAACAAAGGAAGCTACAT 1682
||||||||.||.||.||.||.||.||.||.|||||.|||||.||||||||
BPUM_1710___p 1633 ATGAATACAACGGATGTCCTCCTACTATTCACGAATAAAGGGAGCTACAT 1682
BSNT_02994___ 1683 CTATTGTCCTGTTCACCAGCTGCCTGATATCAGATGGAAGGACATGGGCC 1732
.|||||||||||.||.||||||||.||.||..|.|||||.||||||||.|
BPUM_1710___p 1683 TTATTGTCCTGTGCATCAGCTGCCAGACATACGCTGGAAAGACATGGGAC 1732
BSNT_02994___ 1733 AGCATTTTTCAAATCTGATCACTATTGACCGTGATGAAACGATTGTAAAG 1782
|||||.||.|.|||.|.||..|.|||||||||||||||.|.||...|||.
BPUM_1710___p 1733 AGCATATTACGAATATCATTTCGATTGACCGTGATGAATCTATCCAAAAA 1782
BSNT_02994___ 1783 GCCATACCGATAAAAGAATTTGATCCGTCGGCATATCTTCTATTCTTTAC 1832
|||||.||.||.||||||||||||....|..|.||||||||.||||||||
BPUM_1710___p 1783 GCCATTCCAATTAAAGAATTTGATGAAACATCTTATCTTCTGTTCTTTAC 1832
BSNT_02994___ 1833 GAAAAACGGGATGGTGAAAAAGACAGAGCTCACCCATTATAAAGCACAGC 1882
.|||..|||.||||||||.||.|||.||||....||.||||||||.||||
BPUM_1710___p 1833 AAAAGGCGGAATGGTGAAGAAAACAAAGCTTCTTCAATATAAAGCGCAGC 1882
BSNT_02994___ 1883 GTTATTCTAAGGCGCTTGTGGCCTTAAATCTGAAGGGTGAAGATGAACTG 1932
|.|||||.||..|||||||.|||||.|||||.||.||.||.|||||.||.
BPUM_1710___p 1883 GCTATTCAAAACCGCTTGTCGCCTTGAATCTAAAAGGGGACGATGAGCTC 1932
BSNT_02994___ 1933 ATTGATGTACATGTAACAA-ATGGGGAAAGCCAGA--TCTTTATGGCCAC 1979
.|.|||||.|||||.|||| | |||.|||..|| |.|||||.||.||
BPUM_1710___p 1933 GTGGATGTCCATGTGACAACA---GGACAGCAGGAATTGTTTATTGCGAC 1979
BSNT_02994___ 1980 TCACTTAGGGTACGGTCTATGGTTTGGAGAAGACGAAGTGAATGTAGTTG 2029
..|....||.||.||..|.|||||||..|||||.|||||.|.|||.||||
BPUM_1710___p 1980 GAAAAATGGTTATGGCTTGTGGTTTGATGAAGAAGAAGTAAGTGTTGTTG 2029
BSNT_02994___ 2030 GCGCACGTGCGGCAGGTGTCAAAGGGATTAACTTAAAAGAGGATGACTTT 2079
|..|..|.|||||.|||||||||||.||.|||||.||.||.|..|||...
BPUM_1710___p 2030 GTCCGAGAGCGGCTGGTGTCAAAGGCATCAACTTGAAGGATGGGGACGAA 2079
BSNT_02994___ 2080 GTTGTCTCCGGTGAGATCCTTCAGCAATCTGATTCAA------TTGT-CT 2122
||.|||||.||..|||||.|| |||| ||| .||| ||
BPUM_1710___p 2080 GTAGTCTCTGGCCAGATCATT----AATC-----CAAAGAACGATGTCCT 2120
BSNT_02994___ 2123 TGTTC-----ACACAGCGGGGAGCGGTAAAACGCATGAGTCTTTCTGAGT 2167
.||.| ||.||..|.||.||.||.||.||.||||..||.|||||.|
BPUM_1710___p 2121 CGTGCTGACGACGCAAAGAGGGGCTGTGAAGCGAATGAACCTCTCTGAAT 2170
BSNT_02994___ 2168 TCGAGAAGACATCCCGCGCAAAACGCGGTGTCGTAATGCTAAGGGAACTG 2217
|.||.||.|||||..|.||.||||||||.||..|.|||||.||.|||.|.
BPUM_1710___p 2171 TTGATAAAACATCTAGAGCCAAACGCGGAGTTCTGATGCTTAGAGAATTA 2220
BSNT_02994___ 2218 AAAAAGAATCCTCACCGAGTTGTAGCACTGT--TCGCT-------TG--C 2256
||.||.||.||.||.||..|||| ..|||| ||||| || |
BPUM_1710___p 2221 AAGAAAAACCCGCATCGTATTGT--GTCTGTCATCGCTGCATCACTGCAC 2268
BSNT_02994___ 2257 GGT---CTTGAACAGCGACTAATGGCAGAAACAGAAAAAGGCGACAGAAA 2303
|.| ||||| ||.| ||.|||||.||.||
BPUM_1710___p 2269 GATACACTTGA-----GATT-------GATACAGAGAAGGG--------- 2297
BSNT_02994___ 2304 AGAACTGCAGGCAA----------------------AAGAGTTGCGGACA 2331
|||| .||| ||||| |.
BPUM_1710___p 2298 -----TGCA-ACAATTCCACTTGATATCTCTACTCTAAGAG-------CG 2334
BSNT_02994___ 2332 AACGACAGATACAGCAATGGCTCTTTCTTTTTTGATGAAGAGGAATCAGG 2381
||.|||.|.||.||||||||.||.||..||.|.|||||.||.| |.||||
BPUM_1710___p 2335 AATGACCGCTATAGCAATGGATCATTTATTGTAGATGAGGAAG-AGCAGG 2383
BSNT_02994___ 2382 CA-AGGTTACAGCTGT--TTGGCG--------CCTTCATACAGA--ACAA 2418
.| |.||.|||..||| |||.|| |||.|| .|||| ||||
BPUM_1710___p 2384 GAGAAGTAACACATGTTCTTGTCGCACCTCAACCTGCA-CCAGATGACAA 2432
BSNT_02994___ 2419 TAA---- 2421
|||
BPUM_1710___p 2433 TAAATAA 2439
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