Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02989 and BPUM_1707

See Amino acid alignment / Visit BSNT_02989 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_02989___yneS.1.24716.seq
#    -bsequence dna-align/BPUM_1707___yneS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02989___yneS-BPUM_1707___yneS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02989___yneS-BPUM_1707___yneS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02989___yneS
# 2: BPUM_1707___yneS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 593
# Identity:     429/593 (72.3%)
# Similarity:   429/593 (72.3%)
# Gaps:          16/593 ( 2.7%)
# Score: 1472.0
# 
#
#=======================================

BSNT_02989___      1 ------ATGTTAATTGCTTTATTGATTATTTTGGCCTA-CTTGATAGGCA     43
                           ||||||||||||||..||.||||||||||.|| ||| .|.||||
BPUM_1707___y      1 ATGCAGATGTTAATTGCTTTGATGTTTATTTTGGCTTATCTT-CTCGGCA     49

BSNT_02989___     44 GCATTCCGTCTGGCTTAATTGT-GGGCAAGCTTGCCAAGGGAATTGATAT     92
                     |.|||||.||.||..|.||||| |||.|||| |||.|||||.||||||||
BPUM_1707___y     50 GTATTCCATCCGGTCTCATTGTCGGGAAAGC-TGCAAAGGGTATTGATAT     98

BSNT_02989___     93 TCGGGAGCACGGAAGCGGCAACTTAGGCGCTACCAATGCATTCCGTACAT    142
                     .||.||.||.||.||||||||..||||.||.||.||||||||.|||||..
BPUM_1707___y     99 CCGTGAACATGGCAGCGGCAATCTAGGTGCGACGAATGCATTTCGTACGC    148

BSNT_02989___    143 TGGGTGTAAAAGCTGGTTCGGTCGTCATAGCCGGAGATATTTTGAAAGGG    192
                     |.||.||||||||.||.||..|.||.||..|.|..|||||.||.||||||
BPUM_1707___y    149 TTGGCGTAAAAGCAGGGTCTATTGTTATTTCTGCTGATATATTAAAAGGG    198

BSNT_02989___    193 ACACTGGCAACTGCATTGCCTTTTCTCATGCATGTTGATATTCACCCGCT    242
                     ||.||.||..||||.||.||.|||.|||||||..|.||.|||||..| ||
BPUM_1707___y    199 ACTCTCGCTTCTGCTTTACCGTTTTTCATGCAACTGGACATTCATAC-CT    247

BSNT_02989___    243 TCTT-GCAGGAGTCTTTGCGGTTTTAGGCCACGTGTTTCCCATCTTCGCC    291
                     |.|| ||.||.||...|||.|||.|.||.|||...|||||.|||||.||.
BPUM_1707___y    248 TATTAGCGGGGGTTGCTGCTGTTATCGGTCACAGCTTTCCTATCTTTGCA    297

BSNT_02989___    292 AAATTTAAAGGCGGTAAAGCCGTGGCGACATCAGGAGGCGTTTTGCTATT    341
                     |||||||||||.||.|||||.||.||.|||||.||.|||||.||..||||
BPUM_1707___y    298 AAATTTAAAGGGGGAAAAGCAGTCGCTACATCTGGCGGCGTGTTATTATT    347

BSNT_02989___    342 TTACGCACCCCTGTTATTTATCACGATGGTTGCGGTATTCTTCATCTTTT    391
                     |||.||.||..|.|||||||||||||||.|.||.|..||.|||.|.||||
BPUM_1707___y    348 TTATGCCCCATTCTTATTTATCACGATGATCGCTGCTTTTTTCTTATTTT    397

BSNT_02989___    392 TATACTTGACTAAATTTGTTTCTCTCTCATCGATGTTAACAGGGATCTAT    441
                     |||||.|.|.|||||.||||||..|.|||||.|||.|.||.||.||||||
BPUM_1707___y    398 TATACATTAGTAAATATGTTTCATTATCATCTATGCTGACCGGCATCTAT    447

BSNT_02989___    442 ACTGTTATATATAGTTTCTTTGTCCATGATACGTA--TTTATTGATTGTC    489
                     ||..|.||.||.||..|.||...|.|  |.|||||  ||||.|.|||||.
BPUM_1707___y    448 ACATTCATTTACAGCATATTCACCAA--AGACGTATTTTTAATCATTGTT    495

BSNT_02989___    490 GTTACCCTGCTCACTATTTTTGTGATATACAGACACCGAGCGAACATTAA    539
                     |||.||.|.||..||..|||||||||.|||||||||...||.|||.|.||
BPUM_1707___y    496 GTTGCCGTTCTTGCTGGTTTTGTGATCTACAGACACATCGCCAACCTCAA    545

BSNT_02989___    540 ACGAATTATCAATAAAACAGAACCTAAAGTAAAATGGTTATAA    582
                     ||||||..||||.|||||.|||||.|||.|.||||||.|.||.
BPUM_1707___y    546 ACGAATCCTCAACAAAACTGAACCGAAAATCAAATGGCTCTAG    588


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