Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02988 and BPUM_1706

See Amino acid alignment / Visit BSNT_02988 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:31
# Commandline: needle
#    -asequence dna-align/BSNT_02988___yneR.1.24716.seq
#    -bsequence dna-align/BPUM_1706___yneR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02988___yneR-BPUM_1706___yneR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02988___yneR-BPUM_1706___yneR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02988___yneR
# 2: BPUM_1706___yneR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 296
# Identity:     205/296 (69.3%)
# Similarity:   205/296 (69.3%)
# Gaps:          16/296 ( 5.4%)
# Score: 679.0
# 
#
#=======================================

BSNT_02988___      1 ATGAATATGACAATTAACGAAGACGCATTGAACTGGTATAAAGAAGAACT     50
                     .||||..|.||.|||||.|||||.|||.|.||.|||||.||.||.|||.|
BPUM_1706___y      1 TTGAAATTAACGATTAAAGAAGATGCACTCAATTGGTACAAGGATGAATT     50

BSNT_02988___     51 CGATTTGGAAAGCGGAGACCAGGTTCGCTTTTTCGTCCGCTATGGAGGCT    100
                     .|||||.||||..||.||.||.|||||||||||.||..|.|||||.||.|
BPUM_1706___y     51 AGATTTAGAAAAAGGTGATCAAGTTCGCTTTTTTGTGAGATATGGCGGGT    100

BSNT_02988___    101 GCAGCAACGTTCAAAAGGGTTTTTCTCTCGGTGTAGCGAAAGATGCCCCA    150
                     ||||.||.||.|||||.||.|||||||||||.||.||.|||||||..||.
BPUM_1706___y    101 GCAGTAATGTACAAAAAGGCTTTTCTCTCGGCGTCGCAAAAGATGAACCT    150

BSNT_02988___    151 CAAGAGGCTGGAGTCACTGCAGAAGCTGACGGCATTACCTTCTTTATTGA    200
                     |||.|.||.||.|..||.||.|||...||.||.|||||.|||||..|.||
BPUM_1706___y    151 CAAAATGCCGGCGCAACCGCTGAAATAGAAGGTATTACTTTCTTCGTGGA    200

BSNT_02988___    201 AGAAAGTGATTTATGGTACTTCGATAACCACGACCTTCTCGTCAGC-TAT    249
                     ||||||||||.|.|||||.||.||.|||||.||        ||.|| |||
BPUM_1706___y    201 AGAAAGTGATATGTGGTATTTTGACAACCATGA--------TCTGCATAT    242

BSNT_02988___    250 TCA----GAAGACGCTG---ATGAACCGGTTTTTGAATACCAATAA    288
                     |.|    .|.||..|||   |.|||||.|..|||.|.||..|||||
BPUM_1706___y    243 TGATTATAACGAGTCTGTAAAAGAACCAGAATTTCATTATGAATAA    288


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