Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02986 and BPUM_1705
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:31
# Commandline: needle
# -asequence dna-align/BSNT_02986___yneQ.1.24716.seq
# -bsequence dna-align/BPUM_1705___yneQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02986___yneQ-BPUM_1705___yneQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02986___yneQ-BPUM_1705___yneQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02986___yneQ
# 2: BPUM_1705___yneQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity: 203/354 (57.3%)
# Similarity: 203/354 (57.3%)
# Gaps: 96/354 (27.1%)
# Score: 576.0
#
#
#=======================================
BSNT_02986___ 1 ATGGCGTTTGGTGTGAAACGGGAGGAACTTAACCG-GTGGAAACAAGCAG 49
||||||||||||.|.||| .|.||..|.||||..| |||||||..|||.|
BPUM_1705___y 1 ATGGCGTTTGGTATTAAA-AGAAGCGATTTAAATGCGTGGAAATCAGCTG 49
BSNT_02986___ 50 TGAAAAGAGGAGAAATCGCATTTTTAACACATTACTGGCTGGATGACCGA 99
|..|...|||||||||.||.||||||||.|||||.|||||.||||||||
BPUM_1705___y 50 TTCAGCAAGGAGAAATGGCGTTTTTAACCCATTATTGGCTTGATGACCG- 98
BSNT_02986___ 100 TTTCCAG-AAGCAAAGACTGTGACAAAAGCCGGATGTGCAGACATTGATA 148
|||||.| |.||.||.||.||.||.|||||.|..||| ||| ||||
BPUM_1705___y 99 TTTCCCGCATGCCAATACCGTTACTAAAGCAGCCTGT-CAG-----GATA 142
BSNT_02986___ 149 ------AGCTGGTTCAGTGGGGAG-----CGGCGTACGGGTTAAAAAAAG 187
||.|..||.|.||||||| | |.||..|.|||||||
BPUM_1705___y 143 TGAAGCAGTTAATTGAATGGGGAGAAAAAC-----ATGGACTCAAAAAAG 187
BSNT_02986___ 188 AATGGATCCA--------TAAGAAAAGTGAATTTCCTCACTTTGATCTGC 229
|||||||.|| || |..||||||||||||||..|..
BPUM_1705___y 188 AATGGATTCACGACCGCGTA--------GGGTTTCCTCACTTTGACTTAA 229
BSNT_02986___ 230 TGGGTGAAACACAAAAATA--------------------TGTTTTGGAA- 258
|.||||||||.|||||| | |.|||.||||
BPUM_1705___y 230 TCGGTGAAACGCAAAAA-AGAATCCTGCAAAAGGAGCGGTCTTTAGGAAA 278
BSNT_02986___ 259 ----CAAGAAAA---CCTAACCGATCATCTTATACGATTTCATTTG---- 297
||.|||.| .||| |||| |||
BPUM_1705___y 279 CATTCAGGAATATGGGCTA-----------TATA---------TTGAAGG 308
BSNT_02986___ 298 -TAA 300
|||
BPUM_1705___y 309 ATAA 312
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