Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02979 and BPUM_1700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_02979___yneN.1.24716.seq
# -bsequence dna-align/BPUM_1700___yneN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02979___yneN-BPUM_1700___yneN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02979___yneN-BPUM_1700___yneN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02979___yneN
# 2: BPUM_1700___yneN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity: 350/568 (61.6%)
# Similarity: 350/568 (61.6%)
# Gaps: 119/568 (21.0%)
# Score: 972.0
#
#
#=======================================
BSNT_02979___ 1 ATGCTGAAAAAATGGCTCGCAGGGATC-CTG-----CTTATCATGCTTGC 44
|||..|||||||.|..|.||| |.| ||| |||.|..||.|
BPUM_1700___y 1 ATGTGGAAAAAAGGAATAGCA---AGCGCTGTTTTACTTTTGTTGAT--- 44
BSNT_02979___ 45 TGGTTATAC--GGGATGGAATTTATATCAAACATACAGCAAAAAAGA--- 89
||||| ||| |.| |||||||||..|.||.| ||||||
BPUM_1700___y 45 TGGTT-TACTTGTG-TGGAATTTACTTGAACC---------AAAAGAGCC 83
BSNT_02979___ 90 ---AGTCGGAATTCAAGAGGGGAAACAAGCACCTGATTTTTCTTTGAAAA 136
|.||||..||.||.|.|||.|.|||||.|||||||||....||||||
BPUM_1700___y 84 CGCAATCGGTCTTGAAAATGGGGATCAAGCCCCTGATTTTGAACTGAAAA 133
BSNT_02979___ 137 CGCT-----GTCAGGAGAGAAAAG--CTCTTTACAGGATGCAAAAGGCAA 179
|.|| ||| |||.| |||.|||...|||....||||.||
BPUM_1700___y 134 CCCTAGACGGTC-------AAACGGCCTCGTTATCTGATTATCAAGGGAA 176
BSNT_02979___ 180 AAAAGTGCTGCTCAATTTTTGGGCAACTTGGTGTAAGCCGTGCCGTCAG- 228
|||.|||||..|||||||||||||.||.|||||||||||.|| |||
BPUM_1700___y 177 AAAGGTGCTCGTCAATTTTTGGGCGACATGGTGTAAGCCATG----CAGG 222
BSNT_02979___ 229 ---GAAATGCCTG----CGATGGAA----AAGCTGCAAAAAGAGTACGCC 267
||||||||.| .||.|.|| |||| ||.|| .
BPUM_1700___y 223 ACAGAAATGCCGGATCTAGACGCAATTAGAAGC--------GAATA---T 261
BSNT_02979___ 268 GACAAACTTGCGGTTGTTGCGGTAAATTTCACTTCAGCTGAGAAAAGTG- 316
||..||.|.|..||..||||.||.|||||.||..|..||||.|||||||
BPUM_1700___y 262 GATCAAGTCGAAGTACTTGCAGTGAATTTGACGACCACTGAAAAAAGTGT 311
BSNT_02979___ 317 AGAAACAGGTCCGTGCGTTTGCTGATACGTATGATTTAACG------TTC 360
|| |.||.||....||.|||||.| ||||.||||.| ||.
BPUM_1700___y 312 AG-ATCATGTTGCAGCATTTGCAG------ATGAATTAAAGCTGAGTTTT 354
BSNT_02979___ 361 CCCATTCTGATT-GATAAAAAAGGGA-TCAATGCTGAC--TATAACGTGA 406
||.||| |.||| |||.|||||||.| |||| || || |||.|.|||.
BPUM_1700___y 355 CCTATT-TTATTGGATCAAAAAGGCATTCAA-GC--ACGATATCAAGTGC 400
BSNT_02979___ 407 TGTCATATCCAACGACATATATCTTAGATGAAAAAGGTGTTATCCAAGAC 456
|.||.||.||.||||||||.||.||||||||||||| |||
BPUM_1700___y 401 TTTCTTACCCCACGACATACATATTAGATGAAAAAG-----------GAC 439
BSNT_02979___ 457 ATA-CATGT---TG--GCACCA-----TGACAAAAAAAGAAATGGAACAA 495
.|| ||||| || |||.|| ||||||||||||||||.||.|||
BPUM_1700___y 440 GTATCATGTCTGTGAAGCATCAAATGCTGACAAAAAAAGAAATTGAGCAA 489
BSNT_02979___ 496 AAACTGGATCTTGATTAG 513
.|.|||||||| ||.|
BPUM_1700___y 490 GAGCTGGATCT--ATAA- 504
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