Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02969 and BPUM_1695
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_02969___yneJ.1.24716.seq
# -bsequence dna-align/BPUM_1695___yneJ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02969___yneJ-BPUM_1695___yneJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02969___yneJ-BPUM_1695___yneJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02969___yneJ
# 2: BPUM_1695___yneJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity: 354/502 (70.5%)
# Similarity: 354/502 (70.5%)
# Gaps: 38/502 ( 7.6%)
# Score: 1187.5
#
#
#=======================================
BSNT_02969___ 1 ATGATGATTATAGTTTCATCGATTATTGCTGTGTTAATGGCTGTAGCTGT 50
||||||.|..||.|.||.||.||.|||||.||.|..|||||.||||||||
BPUM_1695___y 1 ATGATGGTCTTAATCTCTTCTATAATTGCGGTATGTATGGCGGTAGCTGT 50
BSNT_02969___ 51 GATGGTGGTCAGAATAAAGTCCTCTGACAA-----GC--CTGTTTCACCA 93
.|||.|..|..|.||.|||||.|||| ||| || ||| |.
BPUM_1695___y 51 CATGTTTATTCGCATTAAGTCATCTG-CAAAACCGGCAACTG------CG 93
BSNT_02969___ 94 AAAAAAATCATTCTTCCGCCGATTTTTATGAGTACGGGAGCGTTAATGTT 143
||||||||.||..|.||.||.|||||.|||||.||.||.||.||.|||||
BPUM_1695___y 94 AAAAAAATTATATTACCTCCTATTTTCATGAGCACTGGTGCATTGATGTT 143
BSNT_02969___ 144 TTTATTTCCGGTATTTTGGGTAACTGGAGCAGAGTTTTTGGAAGCATTCA 193
|||..||||..|.|||..|||||||||.||.||.|||.|.||.|||.|||
BPUM_1695___y 144 TTTTGTTCCAATGTTTCAGGTAACTGGGGCTGAATTTCTCGAGGCAATCA 193
BSNT_02969___ 194 CTTTAGGTGTGATTTTCTCTATTTTTCTAATCAAAACTTCTAAGTTCGAA 243
|..|.||..||.|||||||.||.|||.||||||||||.||.|||||.|||
BPUM_1695___y 194 CAGTGGGGATGTTTTTCTCCATCTTTTTAATCAAAACATCAAAGTTTGAA 243
BSNT_02969___ 244 ATTAAAAATAATGAAATTTACATGAAACGCTCTAAAGCATTTGTTTTTAT 293
||||.|...|||||.||||||.|.||.||.||.|||||||||||.|||||
BPUM_1695___y 244 ATTAGAGGGAATGAGATTTACTTAAAGCGGTCAAAAGCATTTGTGTTTAT 293
BSNT_02969___ 294 ----ATTAGTCGGTCTT-TTGGTGATCAGAATCGTGATGAAATCGATCTT 338
||| ||.||| |||.|..|| |.||||..|||||..|||||.|
BPUM_1695___y 294 TCTCATT----GGACTTCTTGTTCTTC-GTATCGGAATGAAGACGATCCT 338
BSNT_02969___ 339 GAGCACATCAATTGATTATGGTGCACTGAGCGGAATGTTTTGGATTCTGG 388
|||..|.||.|||||||||||..|.||.|||||||||||||||||.||.|
BPUM_1695___y 339 GAGTTCTTCTATTGATTATGGCTCTCTAAGCGGAATGTTTTGGATACTTG 388
BSNT_02969___ 389 CTTTCGGTATGATTGTGCCTTGGAGAATCGCCATGTATTTATCATATCGA 438
|.||.||.|||||||||||||||.|..|.|||||||||||.||.|.|.||
BPUM_1695___y 389 CCTTTGGCATGATTGTGCCTTGGCGCGTTGCCATGTATTTGTCGTTTAGA 438
BSNT_02969___ 439 AA-ACTTCATAACGAGCTGCAGT--CATCTA----ATATTCAAATGAATT 481
|| |..|| ||| |||.| .|||.| |..||||||||||||
BPUM_1695___y 439 AAGATGTC-TAA------GCAATTAGATCCACAACAGGTTCAAATGAATT 481
BSNT_02969___ 482 AA 483
||
BPUM_1695___y 482 AA 483
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