Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02962 and BPUM_1691
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02962___yneE.1.24716.seq
# -bsequence dna-align/BPUM_1691___yneE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02962___yneE-BPUM_1691___yneE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02962___yneE-BPUM_1691___yneE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02962___yneE
# 2: BPUM_1691___yneE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity: 309/489 (63.2%)
# Similarity: 309/489 (63.2%)
# Gaps: 84/489 (17.2%)
# Score: 862.5
#
#
#=======================================
BSNT_02962___ 1 ATGGAACGTCACTACTATACGTACCTGATCAAAGAGGAATTTGCCAATCA 50
||||||||.||.||.||||..||...|||..|.||.||||||||..||||
BPUM_1691___y 1 ATGGAACGCCATTATTATATTTATTGGATTGAGGATGAATTTGCGCATCA 50
BSNT_02962___ 51 CTATTTCGGCCGGGAATCGGTTATGTTTGAGCTGTTTCAAGAC--TATCA 98
.|||||.||..|.|||||..||.|||||.|..||||| .||.| || ||
BPUM_1691___y 51 TTATTTTGGTAGAGAATCAATTTTGTTTCATTTGTTT-GAGTCGTTA-CA 98
BSNT_02962___ 99 TTGGACAAGCCTTGAAAAGCA--GCAGTATGAA------ATGACAGAGAA 140
.||||| |||..||| |.|| ||||| |||...|.|||
BPUM_1691___y 99 CTGGAC-------GAATCGCACGGAAG-ATGAATTGGTGATGCTTGTGAA 140
BSNT_02962___ 141 ACAGATTCAATATATTAC---AC--AACCAATCCC-GATTTTACATATGC 184
||| |.|..||||| || |||.|||||| |.|||| |||||||
BPUM_1691___y 141 ACA-----AGTGGATTACGTGACGAAACGAATCCCTGCTTTT-CATATGC 184
BSNT_02962___ 185 ATCAGCGGTTAAAAATGAATTTAAACAAGACGGAT--------TACAGGC 226
|.|||||.||||..|..||.||| |||.|| |||| |
BPUM_1691___y 185 ACCAGCGATTAATGAACAACTTA------ACGAATATTCACTATACA--C 226
BSNT_02962___ 227 A-----GCTGGATTATATTTATAGAATA----GCT---TTGCCGAAAGCA 264
| |||.||| ||| ||| ||.||..|.|.|
BPUM_1691___y 227 AAATTGGCTCGAT------------ATACAGCGCTTCCTTACCTGATGGA 264
BSNT_02962___ 265 AAAGGCCAC-GCGACGTTTATGATGAAGGAGCAC-ATGATAGAAAT-TGT 311
||||| .|| ||..|.|||||.||.||.||.|.| || ||..|||| |.|
BPUM_1691___y 265 AAAGG-AACGGCTGCATTTATCATAAAAGATCGCTAT-ATCCAAATGTCT 312
BSNT_02962___ 312 GGCTTCGGGAGATTACGAGGCAGAAACGATATTCTTTGAAGTGTTAAGAA 361
|.|..|||.|| |||.||.||||||.|..|.||.|||||||||.|.||||
BPUM_1691___y 313 GCCACCGGCAG-TTATGAAGCAGAAGCAGTGTTTTTTGAAGTGCTGAGAA 361
BSNT_02962___ 362 AAGTAAGCCCTTGCTTTTTAGCAATGGATTTCAATTC---GAAGCGTTAC 408
||.|.||.||||||||..|.||.|||||.|||..||| ||||| ||
BPUM_1691___y 362 AAATTAGTCCTTGCTTCCTTGCGATGGACTTCGGTTCAAAGAAGC---AC 408
BSNT_02962___ 409 GGATGGCTAAATCCGGTGAAAGAAAGAAATTTTGTCTAA 447
||.|||||.||||||||.||||..||.||||||||.|||
BPUM_1691___y 409 GGGTGGCTCAATCCGGTAAAAGTGAGGAATTTTGTTTAA 447
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