Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02959 and BPUM_1689

See Amino acid alignment / Visit BSNT_02959 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:29
# Commandline: needle
#    -asequence dna-align/BSNT_02959___ynzC.1.24716.seq
#    -bsequence dna-align/BPUM_1689___ynzC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02959___ynzC-BPUM_1689___ynzC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02959___ynzC-BPUM_1689___ynzC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02959___ynzC
# 2: BPUM_1689___ynzC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     175/250 (70.0%)
# Similarity:   175/250 (70.0%)
# Gaps:          35/250 (14.0%)
# Score: 602.5
# 
#
#=======================================

BSNT_02959___      1 ATGATTTCAAACGCGAAAA-----TTGCCAGAATTAATGAACTTGCTGCC     45
                     ||||||||.|     ||||     ||||.|||||.|||||    |||..|
BPUM_1689___y      1 ATGATTTCTA-----AAAATCAGCTTGCAAGAATCAATGA----GCTTTC     41

BSNT_02959___     46 AAA----GCTAAAG---CTGGCGTTATT-ACAGAAGAAGAAAAAGCCGAA     87
                     |||    .|.||||   |.||    ||| .||||.|..||||||.|.|||
BPUM_1689___y     42 AAAAAAGTCAAAAGAGACCGG----ATTGTCAGACGCTGAAAAAACAGAA     87

BSNT_02959___     88 CAGCAAAAGC---TCCGTCAAGAGTACTTGAAAGGTTTTCGTTCTTCTAT    134
                        |||||||   |..|..|||||||.||.||||.|||||||||||||||
BPUM_1689___y     88 ---CAAAAGCAATTAAGAGAAGAGTATTTAAAAGCTTTTCGTTCTTCTAT    134

BSNT_02959___    135 GAAGAACACGTTAAAAAGTGTGAAAATCATTGACCCAGAAGGCAATGATG    184
                     |||.||.||..|.||||..|||||||||.|||||||.|||||.||.||||
BPUM_1689___y    135 GAAAAATACACTTAAAACCGTGAAAATCGTTGACCCTGAAGGAAACGATG    184

BSNT_02959___    185 TTACACCAGAAAAGCTAAAAAGAGAACAAAGAAATAACAAACTTCACTAA    234
                     |.|||||||||||..|||||||||   |||||.||.|.||.|||||.|||
BPUM_1689___y    185 TCACACCAGAAAAATTAAAAAGAG---AAAGAGATCAAAACCTTCATTAA    231


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