Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02956 and BPUM_1686
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:29
# Commandline: needle
# -asequence dna-align/BSNT_02956___lexA.1.24716.seq
# -bsequence dna-align/BPUM_1686___lexA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02956___lexA-BPUM_1686___lexA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02956___lexA-BPUM_1686___lexA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02956___lexA
# 2: BPUM_1686___lexA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 470/638 (73.7%)
# Similarity: 470/638 (73.7%)
# Gaps: 37/638 ( 5.8%)
# Score: 1712.5
#
#
#=======================================
BSNT_02956___ 1 ATGACGAAGCTATCAAAAAGGCAACTTGATATCCTCCGTTTTATTAAAGC 50
||||||||||||||||||||.|||||.||||||||....||.||.||||.
BPUM_1686___l 1 ATGACGAAGCTATCAAAAAGACAACTCGATATCCTGACATTCATCAAAGA 50
BSNT_02956___ 51 AGAGGTTAAATCAAAAGGATATCCGCCTTCCGTGAGAGAGATCGGAGAGG 100
|||.||.|||...||.||.|||||.||.|||||..|.||.||.|||||.|
BPUM_1686___l 51 AGAAGTAAAAAGTAAGGGCTATCCCCCATCCGTTCGTGAAATTGGAGAAG 100
BSNT_02956___ 101 CTGTCGGGCTTGCGTCCAGCTCTACTGTCCACGGCCATTTGGCCCGCTTG 150
|||||||.||.||.|||||.||.||.||.||.||.|||||.||..|..|.
BPUM_1686___l 101 CTGTCGGTCTAGCATCCAGTTCAACGGTTCATGGACATTTAGCTAGACTA 150
BSNT_02956___ 151 GAAACAAAAGGGC-TGATCAGACGAGATCCGACAAAACCAAGAGCAATAG 199
||||| .|||||| |.||.|||.||||.|||||||||||.|||||.||.|
BPUM_1686___l 151 GAAAC-GAAGGGCTTAATAAGAAGAGACCCGACAAAACCTAGAGCGATCG 199
BSNT_02956___ 200 AAATTCTTGATGAA---GAAGTAGACATTCCGCAAAGCCAG----GTCGT 242
||.|.||.|||||| |||.|..|.|||| ||||| || ||..|
BPUM_1686___l 200 AAGTACTAGATGAAGAGGAATTGAATATTC--CAAAG--AGTGCTGTAAT 245
BSNT_02956___ 243 TAATGTACCGGTCATCGGGAAAGTCACGGCGGGATCTCCTATTACAGCAG 292
.||.|||||.||||||||.|||||.||.||.||.|..||||||||.||.|
BPUM_1686___l 246 GAACGTACCAGTCATCGGAAAAGTAACAGCAGGCTTGCCTATTACGGCTG 295
BSNT_02956___ 293 TAGAAAATATTGAAGAATATTTTCCGCTCCCAGA--------CCGCATGG 334
|.||.|||.|.||||||||.||.||.||.||.|| |.|||
BPUM_1686___l 296 TTGAGAATGTAGAAGAATACTTCCCTCTTCCTGAAACTTTTGCAGCA--- 342
BSNT_02956___ 335 TTCCTCCAGACGAGCATGTATTTATGCTGGAGATTATGGGAGACAGTATG 384
||.||.||.||.||.||||||||.||.|||||||||||.||||||
BPUM_1686___l 343 -----CCGGATGAACAAGTGTTTATGCTTGAAATTATGGGAGAAAGTATG 387
BSNT_02956___ 385 ATAGATGCTGGTATTCTCGATAAGGACTATGTCAT----CGTTAAACAGC 430
||.|||||.||.|||.|.||.|||||||||||||| ||| ||||
BPUM_1686___l 388 ATTGATGCAGGCATTTTGGACAAGGACTATGTCATTGTGCGT----CAGC 433
BSNT_02956___ 431 AAAACACAGCGAACAATGGGGAAATTGTAGTTGCAATGACAGAAGATGAT 480
|||.|||.||.||||||||.||.|||||.||.||.||||||||.||.|||
BPUM_1686___l 434 AAAGCACTGCTAACAATGGAGATATTGTCGTCGCCATGACAGAGGAAGAT 483
BSNT_02956___ 481 GAAGCAACTGTAAAACGATTCTATAAAGAGGATACCCACATTCGCTTGCA 530
|||||.||.||.|||||.||.||||||||.|||||.|||.||.|.||.||
BPUM_1686___l 484 GAAGCGACAGTGAAACGTTTTTATAAAGAAGATACACACTTTAGATTACA 533
BSNT_02956___ 531 GCCTGAGAACCCAACGATGGAACCTATCATTTTGCAGAATGTCAGCATTC 580
|||.||.||||||.|.||||||||.||.|||||.||||||||.||.||.|
BPUM_1686___l 534 GCCAGAAAACCCATCTATGGAACCGATTATTTTACAGAATGTAAGTATAC 583
BSNT_02956___ 581 TAGGGAAAGTGATTGGCGTGTTCAGAACCGTCCATTAA 618
||||.||||||||||||||.||.||||...|.||.|||
BPUM_1686___l 584 TAGGTAAAGTGATTGGCGTATTTAGAAATATTCACTAA 621
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