Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03042 and BPUM_1684

See Amino acid alignment / Visit BSNT_03042 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:33
# Commandline: needle
#    -asequence dna-align/BSNT_03042___yoeB.1.24716.seq
#    -bsequence dna-align/BPUM_1684___yoeB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03042___yoeB-BPUM_1684___yoeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03042___yoeB-BPUM_1684___yoeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03042___yoeB
# 2: BPUM_1684___yoeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 595
# Identity:     369/595 (62.0%)
# Similarity:   369/595 (62.0%)
# Gaps:         101/595 (17.0%)
# Score: 1038.0
# 
#
#=======================================

BSNT_03042___      1 ATGAAAAAATGTCTTC-TATTTCTAACAACCATTGCACTTATTCTGTCAT     49
                     .||||||||| |.||| |.||..||||..|.|||...|||||..|.||||
BPUM_1684___y      1 TTGAAAAAAT-TATTCGTTTTATTAACTGCTATTATGCTTATGATCTCAT     49

BSNT_03042___     50 T--AAGC-ACAAATGCATT------TGCGAAAAATACATCAGGCGATTTA     90
                     |  ||.| ||||   ||||      |.|.|||||   |.|||.|..|||.
BPUM_1684___y     50 TACAATCTACAA---CATTGGCCGCTTCTAAAAA---ACCAGCCACTTTG     93

BSNT_03042___     91 TCACAAAAACAAGCATTACA-GTTGGCATT-ATCCGCTAGAGAACATTTT    138
                     .||.|.|||.||||.||||| .|||.|.|| ||  ||..|||||||.|||
BPUM_1684___y     94 ACAAATAAAGAAGCGTTACATATTGCCCTTGAT--GCACGAGAACACTTT    141

BSNT_03042___    139 TGGAACACCATGAGCGGCCACAATCCGAAGGTGAAAAAAGCAGTTTGCCC    188
                     ||||...|.|||...|||.||              ||||           
BPUM_1684___y    142 TGGAGTGCGATGTCAGGCTAC--------------AAAA-----------    166

BSNT_03042___    189 ATCAGGCACATTC-GAGT----ATCAAAATC--TTCAATATGTATACATG    231
                     .|.|||.|||||| ||.|    ||.||||||  ||...|||..|.|||||
BPUM_1684___y    167 TTAAGGAACATTCTGATTACAAATTAAAATCATTTAGCTATAAAGACATG    216

BSNT_03042___    232 ---TGCAGTGATCT-----AGGCACT------AAAGCAAAAGCGGTGAA-    266
                        |.||...||||     |..||.|      ||||.||||.|  |.|| 
BPUM_1684___y    217 ACTTACAACTATCTTTCTAAAACATTTGATACAAAGAAAAAAC--TAAAC    264

BSNT_03042___    267 --TTATTTAACTCCTATTTTTACAAAAACAGCAATCGAAAAAGGCTTTAA    314
                       .||..||.|||...||||.||||||..|||.|||.|..||||.||.||
BPUM_1684___y    265 AGCTACCTATCTCAAGTTTTCACAAAAGAAGCCATCAATCAAGGTTTAAA    314

BSNT_03042___    315 AGATTATCATTTCACTGTTTCA-AAAGGAAAGCTTGCTGTTCCAATCGGT    363
                     |||.||.||.||||.|| |||| |||||.||..|.|||||||||.|.||.
BPUM_1684___y    315 AGACTACCAGTTCATTG-TTCATAAAGGTAAAATGGCTGTTCCAGTTGGC    363

BSNT_03042___    364 GACGGAGACAATCTTTTGAATTGGAAAAAATCAACTGCTAAACTGGTCTC    413
                     ||||||||||||.|..|.||||||.|.|||.||||..|||||||.|||||
BPUM_1684___y    364 GACGGAGACAATATGCTTAATTGGGATAAAGCAACACCTAAACTTGTCTC    413

BSNT_03042___    414 TAAAAAAGGCGGC--ACAAT---CACATACGAATTTACCGTCCCTACATT    458
                     |||.|||     |  |||.|   ||||||.|||||.||.|||||.|||.|
BPUM_1684___y    414 TAACAAA-----CAAACAGTCCGCACATATGAATTCACTGTCCCAACACT    458

BSNT_03042___    459 AGACGGATCCCCTTCTGC-------AAAACGGAAAGTGACATTCGTGAAA    501
                     .|||||          ||       ||||.|.|.|||.||.||||..|||
BPUM_1684___y    459 TGACGG----------GCGCAAAGTAAAAAGAACAGTTACGTTCGAAAAA    498

BSNT_03042___    502 GAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATAA    546
                     |.|.|.|||.|.||||||||||...||.|||||||.|||||.|||
BPUM_1684___y    499 GGACAAAAAGATTGGAAAGTCACAAAAATTGACGCTGTTATCTAA    543


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.