Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03831 and BPUM_1682

See Amino acid alignment / Visit BSNT_03831 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:23
# Commandline: needle
#    -asequence dna-align/BSNT_03831.1.24716.seq
#    -bsequence dna-align/BPUM_1682___nucB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03831-BPUM_1682___nucB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03831-BPUM_1682___nucB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03831
# 2: BPUM_1682___nucB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity:     253/455 (55.6%)
# Similarity:   253/455 (55.6%)
# Gaps:         124/455 (27.3%)
# Score: 789.5
# 
#
#=======================================

BSNT_03831         0 --------------------------------------------------      0
                                                                       
BPUM_1682___n      1 ATGAGAAGAGGCTGGATGACTGCTGTCGCTTTATGCTTTGTGATATGGAT     50

BSNT_03831         1 --------------------------------ATGGTTCCGCAACAGATC     18
                                                     |||   |.||||.||.| 
BPUM_1682___n     51 GGGCACGCTGTTAAGTGGATTTGGGGAGGAACATG---CAGCAAAAGGT-     96

BSNT_03831        19 CAAGGCGCATCTTCG-TATGA-CAAAGTGTTAT--ATTTTCC----GCTG     60
                         |||.|   ||| ||||| ||   |||.||  |.|||||    |   
BPUM_1682___n     97 ----GCGGA---TCGATATGATCA---TGTCATTCAATTTCCAAAAG---    133

BSNT_03831        61 TCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATT-GCAGAGG    109
                      ..||.||.||.|||||.||||||||||||..|||.||.||| |.|.|||
BPUM_1682___n    134 -AACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGG    182

BSNT_03831       110 GACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGA------CAAA    153
                     | |||.|||||.|.|||||.||.|||.||.||||.|||||      ||  
BPUM_1682___n    183 G-CATTCAGATGTGTGTACGATAGACCGAAATGGTGCAGATGCCCGCA--    229

BSNT_03831       154 AGGCGGGAGGAATCTTTAAAGGGAATCCCGACCAAGCCGGGCTATGACCG    203
                         ||.|.|||||||||||.||.||.|||||.||.||.||.|..|||||
BPUM_1682___n    230 ----GGCAAGAATCTTTAAAAGGCATTCCGACTAAACCAGGATTCGACCG    275

BSNT_03831       204 GGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGA-T    252
                     .|||||||||||.|||||.||.||....|||||.||...|||||| || |
BPUM_1682___n    276 AGATGAGTGGCCAATGGCCGTTTGTTTTGAAGGAGGAAAAGGGGC-GAGT    324

BSNT_03831       253 GTCCGATATGTGACGCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGG    302
                     ||.|.||||||.|..||||||||||||.|.||.||.|||||.|||||.||
BPUM_1682___n    325 GTTCAATATGTCAGCCCTTCTGATAATAGGGGAGCAGGCTCATGGGTTGG    374

BSNT_03831       303 GAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTATTGTGC    352
                     ..|.||.|||||..|.||||||||.||.|..|||.|..|.|||||||||.
BPUM_1682___n    375 ACACCAGATGAGTGGGTATCCTGATGGGAAAAGAATATTATTTATTGTGA    424

BSNT_03831       353 AGTAG    357
                     |.||.
BPUM_1682___n    425 AATAA    429


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