Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03831 and BPUM_1682
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:23
# Commandline: needle
# -asequence dna-align/BSNT_03831.1.24716.seq
# -bsequence dna-align/BPUM_1682___nucB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03831-BPUM_1682___nucB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03831-BPUM_1682___nucB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03831
# 2: BPUM_1682___nucB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 455
# Identity: 253/455 (55.6%)
# Similarity: 253/455 (55.6%)
# Gaps: 124/455 (27.3%)
# Score: 789.5
#
#
#=======================================
BSNT_03831 0 -------------------------------------------------- 0
BPUM_1682___n 1 ATGAGAAGAGGCTGGATGACTGCTGTCGCTTTATGCTTTGTGATATGGAT 50
BSNT_03831 1 --------------------------------ATGGTTCCGCAACAGATC 18
||| |.||||.||.|
BPUM_1682___n 51 GGGCACGCTGTTAAGTGGATTTGGGGAGGAACATG---CAGCAAAAGGT- 96
BSNT_03831 19 CAAGGCGCATCTTCG-TATGA-CAAAGTGTTAT--ATTTTCC----GCTG 60
|||.| ||| ||||| || |||.|| |.||||| |
BPUM_1682___n 97 ----GCGGA---TCGATATGATCA---TGTCATTCAATTTCCAAAAG--- 133
BSNT_03831 61 TCTCGTTATCCGGAAACCGGCAGTCATATTAGAGATGCGATT-GCAGAGG 109
..||.||.||.|||||.||||||||||||..|||.||.||| |.|.|||
BPUM_1682___n 134 -AACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGG 182
BSNT_03831 110 GACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGA------CAAA 153
| |||.|||||.|.|||||.||.|||.||.||||.||||| ||
BPUM_1682___n 183 G-CATTCAGATGTGTGTACGATAGACCGAAATGGTGCAGATGCCCGCA-- 229
BSNT_03831 154 AGGCGGGAGGAATCTTTAAAGGGAATCCCGACCAAGCCGGGCTATGACCG 203
||.|.|||||||||||.||.||.|||||.||.||.||.|..|||||
BPUM_1682___n 230 ----GGCAAGAATCTTTAAAAGGCATTCCGACTAAACCAGGATTCGACCG 275
BSNT_03831 204 GGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGGGCTGA-T 252
.|||||||||||.|||||.||.||....|||||.||...|||||| || |
BPUM_1682___n 276 AGATGAGTGGCCAATGGCCGTTTGTTTTGAAGGAGGAAAAGGGGC-GAGT 324
BSNT_03831 253 GTCCGATATGTGACGCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGG 302
||.|.||||||.|..||||||||||||.|.||.||.|||||.|||||.||
BPUM_1682___n 325 GTTCAATATGTCAGCCCTTCTGATAATAGGGGAGCAGGCTCATGGGTTGG 374
BSNT_03831 303 GAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTATTGTGC 352
..|.||.|||||..|.||||||||.||.|..|||.|..|.|||||||||.
BPUM_1682___n 375 ACACCAGATGAGTGGGTATCCTGATGGGAAAAGAATATTATTTATTGTGA 424
BSNT_03831 353 AGTAG 357
|.||.
BPUM_1682___n 425 AATAA 429
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