Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05147 and BPUM_1674

See Amino acid alignment / Visit BSNT_05147 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:48
# Commandline: needle
#    -asequence dna-align/BSNT_05147___yvbY.1.24716.seq
#    -bsequence dna-align/BPUM_1674.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05147___yvbY-BPUM_1674.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05147___yvbY-BPUM_1674.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05147___yvbY
# 2: BPUM_1674
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     432/882 (49.0%)
# Similarity:   432/882 (49.0%)
# Gaps:         318/882 (36.1%)
# Score: 917.5
# 
#
#=======================================

BSNT_05147___      1 ATGACGAAGGGAACCATT-------CAGAATCAAGAGAGCTTTTTAAACC     43
                        |.|||||||||||||       .||||||       .||||||    
BPUM_1674          1 ---ATGAAGGGAACCATTTCTCACCGAGAATC-------GTTTTTA----     36

BSNT_05147___     44 GAATCGCATC---CAGCCTGGGCCGTGAACGAAGAACAGGAGGCGTGGCA     90
                      |.||..|||   ||||          ||..|.|||.||          |
BPUM_1674         37 -ACTCATATCCGTCAGC----------AATTAGGAAAAG----------A     65

BSNT_05147___     91 GTC--CCTGAATGGGCGCATCAGCCGCAATATAAAACACTTGAAGGTTAT    138
                     .||  |||         |.||.|||.|                    |||
BPUM_1674         66 TTCATCCT---------CGTCTGCCTC--------------------TAT     86

BSNT_05147___    139 TCAGCGGATGACTTAG-----TCA----CAGTG-----------------    162
                     ||||||...|.|||.|     |||    |||||                 
BPUM_1674         87 TCAGCGTCCGGCTTGGAAGCATCAAGTTCAGTGGGAAACAAACGGACTTT    136

BSNT_05147___    163 ---CTCAAAAA------------CCATTG---------TGTCAA--AATC    186
                        ||.||.||            |.||||         ||||||  |||.
BPUM_1674        137 TGTCTAAAGAAGAGCTAGTCGAGCAATTGAAGATGCAATGTCAACGAATT    186

BSNT_05147___    187 CATAC-AGAGCTGATTGAAAC---------GGATTCAACCGGCCT-----    221
                     ||.|| |||| ||.|.|||||         ||    ||.||.|||     
BPUM_1674        187 CACACAAGAG-TGGTCGAAACAACCCCAGAGG----AAGCGCCCTCTGCA    231

BSNT_05147___    222 TTACGATGCCCTGCGCGAGCAAGTCAGCCGCTTTTCCGGA---GGCCCTG    268
                     .|||||| |..||       |.|.|||     ..|..|||   ||..|||
BPUM_1674        232 CTACGAT-CATTG-------ATGACAG-----AGTATGGAGAGGGTTCTG    268

BSNT_05147___    269 TCAT--CATTCCGAAGGACCCCCGCTTTGAAGAATACGGA------CTGA    310
                     |.||  |||  ||...||.|..||.||||||.|.||.|||      |.||
BPUM_1674        269 TGATGACAT--CGGGCGATCATCGTTTTGAACAGTATGGATTTTATCCGA    316

BSNT_05147___    311 ------AAAGCCTGC-TCACCAAGGACTGGCCGAGTGAAGGAACGCCGGT    353
                           |.|||.||| .|||.|||||.|.||  |||.|   .|.||    
BPUM_1674        317 TGTTTGACAGCTTGCAGCACGAAGGATTCGC--AGTCA---CAAGC----    357

BSNT_05147___    354 CTGGGAGTGGGATGCTGA--CA--AAGGCGAGGAAAATATCAAAAAAGCG    399
                            |||.|||||||  ||  |||| ||.||||||||||....|||.
BPUM_1674        358 -------TGGAATGCTGAGGCATCAAGG-GAAGAAAATATCAGGCTAGCA    399

BSNT_05147___    400 GAGCAAGC-------------CAATGTAGGGATTACATTCAGCGAAATAA    436
                     ||.|||||             ..||.|||.||||||             |
BPUM_1674        400 GAACAAGCGGCGTATTCGGTTGTATTTAGTGATTAC-------------A    436

BSNT_05147___    437 CATTGGCTGAGTCGGGGACGGTTGTCCTCTTC-TCCTCAAAAGACATC--    483
                     |.||.||.||.||.||||||.|.||||| ||| |||        ||||  
BPUM_1674        437 CTTTAGCAGAATCAGGGACGATCGTCCT-TTCATCC--------CATCAG    477

BSNT_05147___    484 GGCC------GATCTCTCAGC--CTTCTGCCGACGACTTATATTGCGATC    525
                     ||||      ||.|.||  ||  .||.|.||||.||..|||      |||
BPUM_1674        478 GGCCAAGGAAGAGCACT--GCATTTTTTACCGATGATGTAT------ATC    519

BSNT_05147___    526 GTG----CCGAAATCAAGCA---TTGTACCGAGAATGACACAAGCCAGT-    567
                     |||    ..|||| .|||||   |.||.|||.|.||||..|||| |.|| 
BPUM_1674        520 GTGTGTATTGAAA-AAAGCACGGTGGTTCCGCGGATGATTCAAG-CTGTT    567

BSNT_05147___    568 --GA-TATCATCCGC-------------CAAAACATTGCGGACGGTGTCA    601
                       || |.|||..|||             .|.|.|| .|||.|.||||   
BPUM_1674        568 TCGACTCTCAATCGCTTGGTAGAAGAAGGAGAGCA-GGCGAAAGGTG---    613

BSNT_05147___    602 CTGTTC-CTTCATGTATCAACTACATTACCGGACCGAGCAACTCAGCAGA    650
                     |..||| .||||  |||||           ||.|||||.|||||.||.||
BPUM_1674        614 CGATTCATTTCA--TATCA-----------GGTCCGAGTAACTCTGCGGA    650

BSNT_05147___    651 CATTGAAATGGATTTAGTTGTGGGAGTGCACGGACCTGTAAAGGCAG--C    698
                     .|||||.|||.||||.||.||.||.||.||.||.||.||...|||.|  .
BPUM_1674        651 TATTGAGATGAATTTGGTAGTAGGGGTTCATGGTCCCGTTCGGGCGGTTT    700

BSNT_05147___    699 ATATATTCTCGTCTCTGATCGCTGA-------    723
                     ||.|||         ||||.|.|||       
BPUM_1674        701 ATCTAT---------TGATAGATGATGAATAG    723


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05147 and BPUM_1674

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
