Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02802 and BPUM_1637
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_02802___glnA.1.24716.seq
# -bsequence dna-align/BPUM_1637___glnA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02802___glnA-BPUM_1637___glnA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02802___glnA-BPUM_1637___glnA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02802___glnA
# 2: BPUM_1637___glnA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1337
# Identity: 1140/1337 (85.3%)
# Similarity: 1140/1337 (85.3%)
# Gaps: 4/1337 ( 0.3%)
# Score: 4888.0
#
#
#=======================================
BSNT_02802___ 1 ATGGCAAATTACACTAGAGAAGATATCGAAACATTAGTAAAAGAAGAAAA 50
||||||||.|||||.|||||||||||||.||.|||||||||.||.|||||
BPUM_1637___g 1 ATGGCAAAATACACAAGAGAAGATATCGTAAAATTAGTAAATGAGGAAAA 50
BSNT_02802___ 51 CGTGAAGTATATCCGCCTTCAATTTACTGACATTCTTGGAACAATCAAGA 100
|||.|||||.|||||.||.||||||||.||||||||.|||||.||.||.|
BPUM_1637___g 51 CGTAAAGTACATCCGTCTGCAATTTACAGACATTCTCGGAACGATTAAAA 100
BSNT_02802___ 101 ATGTTGAGATTCCTGTAAGCCAGCTTGGAAAAGCGCTTGATAATAAA-GT 149
||||||||||||||||.||||||.|.|.||||||.||.|||||.||| ||
BPUM_1637___g 101 ATGTTGAGATTCCTGTGAGCCAGTTAGAAAAAGCTCTCGATAACAAATGT 150
BSNT_02802___ 150 CATGTTTGACGGTTCTTCTATTGAGGGATTCGTTCGTATCGAAGAGTCAG 199
||||||||||||||.||||||||.||.|||||.|||||.||.||.||||
BPUM_1637___g 151 -ATGTTTGACGGTTCATCTATTGAAGGTTTCGTACGTATTGAGGAATCAG 199
BSNT_02802___ 200 ACATGTACCTGTATCCAGATCTAAATACATTTGTTATCTTCCCATGGACA 249
|.|||||.||.||.|||||.||.||.|||||||||||.|||||.||||||
BPUM_1637___g 200 ATATGTATCTATACCCAGACCTCAACACATTTGTTATTTTCCCTTGGACA 249
BSNT_02802___ 250 GCTGAAAAAGGTAAAGTAGCACGTTTCATCTGTGATATTTATAATCCGGA 299
||.||||||||||||||.|||||.||.||.|||||.|||||.||.||.||
BPUM_1637___g 250 GCAGAAAAAGGTAAAGTTGCACGCTTTATTTGTGACATTTACAAACCAGA 299
BSNT_02802___ 300 TGGCACACCTTTCGAAGGTGACCCGCGAAACAACTTAAAACGGATTCTGA 349
.||.||.||.||.||.||.|||||.||.|||||||||||.||.|||.|.|
BPUM_1637___g 300 CGGGACGCCATTTGATGGAGACCCACGTAACAACTTAAAGCGTATTTTAA 349
BSNT_02802___ 350 AAGAAATGGAAGACCTCGGCTTCAGTGATTTTAACCTTGGACCTGAGCCT 399
|.||||||||||||||.||.||.||||||||.|||||||||||||||||.
BPUM_1637___g 350 AGGAAATGGAAGACCTAGGATTTAGTGATTTCAACCTTGGACCTGAGCCA 399
BSNT_02802___ 400 GAATTCTTCTTATTCAAATTGGACGAAAAAGGCGAGCCAACGCTTGAACT 449
||||||||.|||||.|||||.||.|||||||||||.||||||||||||||
BPUM_1637___g 400 GAATTCTTTTTATTTAAATTAGATGAAAAAGGCGAACCAACGCTTGAACT 449
BSNT_02802___ 450 AAACGACAAAGGCGGATATTTCGACTTAGCGCCAACTGATTTAGGAGAAA 499
||||||.|||||.|||||.||.|||.|.||.|||||.|||.||||.||||
BPUM_1637___g 450 AAACGATAAAGGTGGATACTTTGACCTTGCACCAACAGATCTAGGCGAAA 499
BSNT_02802___ 500 ACTGCCGCCGCGATATCGTGCTTGAGCTTGAAGAGATGGGCTTTGAAATC 549
||||||||||.|||||||||||||||||||||||.||||||||||||||.
BPUM_1637___g 500 ACTGCCGCCGTGATATCGTGCTTGAGCTTGAAGAAATGGGCTTTGAAATT 549
BSNT_02802___ 550 GAAGCGTCTCACCACGAAGTAGCACCTGGTCAACACGAAATCGACTTTAA 599
||||||||||||||.||||||||||||||.||.||.|||||.||||||||
BPUM_1637___g 550 GAAGCGTCTCACCATGAAGTAGCACCTGGACAGCATGAAATTGACTTTAA 599
BSNT_02802___ 600 ATATGCTGGAGCAGTCCGCTCTTGTGATGACATCCAAACTTTTAAACTAG 649
||||||.||.||..|||||||||||||||||||.|||||.||.|||||.|
BPUM_1637___g 600 ATATGCAGGCGCTATCCGCTCTTGTGATGACATTCAAACGTTCAAACTCG 649
BSNT_02802___ 650 TTGTCAAAACAATTGCCCGCAAACACGGCCTGCATGCGACATTTATGCCA 699
||||.|||||||||||..|.||||||||.||.|||||||||||.||||||
BPUM_1637___g 650 TTGTTAAAACAATTGCGAGAAAACACGGACTTCATGCGACATTCATGCCA 699
BSNT_02802___ 700 AAACCATTGTTCGGTGTGAACGGTTCAGGTATGCACTGCAATCTATCACT 749
|||||||||||||||||.|||||.||.|||||||||||.||.||||||.|
BPUM_1637___g 700 AAACCATTGTTCGGTGTAAACGGATCTGGTATGCACTGTAACCTATCATT 749
BSNT_02802___ 750 CTTCAAAAATGGTGTTAACGCATTCTTTGACGAAAACGCAGATCTTCAGT 799
.|||||||||||....||||||||||||||.|||||.||||||.|.||.|
BPUM_1637___g 750 ATTCAAAAATGGCAAAAACGCATTCTTTGATGAAAAAGCAGATTTACAAT 799
BSNT_02802___ 800 TAAGTGAAACAGCGAAACACTTCATTGCAGGTATCGTGAAGCACGCAACA 849
||||.||.|||||.|.||||||.||.||||||||||||||||||||||||
BPUM_1637___g 800 TAAGCGAGACAGCTAGACACTTTATCGCAGGTATCGTGAAGCACGCAACA 849
BSNT_02802___ 850 AGCTTTACAGCAGTAACAAACCCGACAGTAAACTCTTACAAACGTCTTGT 899
|||||.|||||.||.||||||||.||.||.|||||||||||.||||||||
BPUM_1637___g 850 AGCTTCACAGCGGTCACAAACCCAACGGTGAACTCTTACAAGCGTCTTGT 899
BSNT_02802___ 900 TCCTGGCTATGAAGCACCTTGCTATGTAGCATGGAGCGCGCAAAACAGAA 949
.|||||.||||||||||||||||||||.||||||||.||.||||||.|.|
BPUM_1637___g 900 ACCTGGTTATGAAGCACCTTGCTATGTGGCATGGAGTGCACAAAACCGTA 949
BSNT_02802___ 950 GCCCGCTTATCCGTATCCCGGCTTCTCGCGGCATCAGCACACGTGTTGAA 999
||||..|.|||||||||||.||.||.|||||.||||||||||||||.|||
BPUM_1637___g 950 GCCCATTGATCCGTATCCCAGCATCACGCGGTATCAGCACACGTGTAGAA 999
BSNT_02802___ 1000 GTACGCAGCGTAGACCCAGCTGCAAACCCATACCTTGCACTTAGCGTATT 1049
||.|||||||||||||||.||||||||||||||||||||||.||||||||
BPUM_1637___g 1000 GTGCGCAGCGTAGACCCATCTGCAAACCCATACCTTGCACTAAGCGTATT 1049
BSNT_02802___ 1050 GCTTGCTGCAGGTTTAGACGGTATCAAAAACAAACTGGAAGCGCCGGCTC 1099
.|||||.||||||.|.|||||.||||||||||||||.||.||.||.||||
BPUM_1637___g 1050 ACTTGCAGCAGGTCTTGACGGCATCAAAAACAAACTAGACGCACCAGCTC 1099
BSNT_02802___ 1100 CAATCGACCGCAACATCTATGTGATGAGCAAAGAAGAGCGCATGGAAAAC 1149
||||||||.|.|||||||||||.|||..|||||||||||||.|.||||||
BPUM_1637___g 1100 CAATCGACAGAAACATCTATGTCATGGACAAAGAAGAGCGCCTTGAAAAC 1149
BSNT_02802___ 1150 GGAATCGTTGACCTTCCAGCAACACTTGCGGAAGCACTAGAAGAAT-TCA 1198
||.|||..|||.||.||.|||||||||||.||||||||.| ||..| |||
BPUM_1637___g 1150 GGCATCTCTGATCTGCCTGCAACACTTGCAGAAGCACTTG-AGCTTCTCA 1198
BSNT_02802___ 1199 AATCAAACGAAGTCATGGTCAAAGCGCTGGGCGAGCACCTATTCGAACAC 1248
|.|||||||||||.||||||||.||.||.||.||.|||.||||||||||.
BPUM_1637___g 1199 AGTCAAACGAAGTAATGGTCAACGCACTAGGTGATCACTTATTCGAACAT 1248
BSNT_02802___ 1249 TTCATCGAAGCAAAAGAAATCGAATGGGATATGTTCCGCACGCAAGTTCA 1298
|||||||||.|||||||||||||||||||||||||||||||.|||||.||
BPUM_1637___g 1249 TTCATCGAATCAAAAGAAATCGAATGGGATATGTTCCGCACCCAAGTACA 1298
BSNT_02802___ 1299 CCCTTGGGAACACGAACAGTATATGTCTCAGTATTAA 1335
|||.|||||||..||.|||||||||||||||||||||
BPUM_1637___g 1299 CCCATGGGAACGTGATCAGTATATGTCTCAGTATTAA 1335
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