Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02800 and BPUM_1635
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_02800___ynbB.1.24716.seq
# -bsequence dna-align/BPUM_1635___ynbB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02800___ynbB-BPUM_1635___ynbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02800___ynbB-BPUM_1635___ynbB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02800___ynbB
# 2: BPUM_1635___ynbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1322
# Identity: 939/1322 (71.0%)
# Similarity: 939/1322 (71.0%)
# Gaps: 97/1322 ( 7.3%)
# Score: 3296.5
#
#
#=======================================
BSNT_02800___ 1 ATGTTTGACACATTAACACACGG-AGAATTATTGAAGAAAACGGCAATGG 49
||||||.|.|||||||.|||||| || ||||..|||||
BPUM_1635___y 1 ATGTTTCATACATTAAAACACGGCAG---TATTTTAGAAA---------- 37
BSNT_02800___ 50 AAGTGGAAGCGG--ACATTGC-CGGCATT---------CATAAACAAATA 87
||||.|.|||.| |||..|| .|.|||| |||.|.|||||.
BPUM_1635___y 38 AAGTAGCAGCAGAAACAGAGCAAGACATTTTACACGTGCATCAGCAAATT 87
BSNT_02800___ 88 GAAGAAATCAGCGAGCGAAATGAGTGGAGAGTGCTTCAAAGCTATAGAAA 137
||..|||..||.||.|.||||||.|||.|.||||||.|||||||..||||
BPUM_1635___y 88 GATCAAAAGAGTGAACAAAATGAATGGCGGGTGCTTGAAAGCTACCGAAA 137
BSNT_02800___ 138 ACACAAAGTAAGCGACACTCATTTCATGCCGTCTACTGGATACGGCTATG 187
.||.|.|||.||.|||.|||||||.|..||..||||.|||||.|||||.|
BPUM_1635___y 138 GCATAGAGTCAGTGACTCTCATTTTAATCCAACTACCGGATATGGCTACG 187
BSNT_02800___ 188 ATGATATCGGAAGAGACACGCTTGAAAGCATATATGCGGATGTGTTTGGC 237
|.|||||.||.|||||||||.|.||||..||.|||||||||||.||.||.
BPUM_1635___y 188 ACGATATGGGGAGAGACACGTTAGAAAAAATTTATGCGGATGTCTTCGGA 237
BSNT_02800___ 238 GGAGAAGCGGGGCTTGTAAGGCCGCAAATCATTTCAGGCACACATGCGAT 287
||||||...||.|||||..|.|||||.||||||||.||.|||||||||||
BPUM_1635___y 238 GGAGAAAACGGACTTGTCCGTCCGCAGATCATTTCTGGTACACATGCGAT 287
BSNT_02800___ 288 CTCAATTGCTTTGTTCGGTGTCCTCAGACCGGGGGACGAGCTCCTTTATA 337
.||.|||||.||.||||||||.||.|||||.||.||.||..|..||||||
BPUM_1635___y 288 TTCCATTGCGTTATTCGGTGTGCTAAGACCTGGCGATGAATTGATTTATA 337
BSNT_02800___ 338 TCACGGGCAAGCCGTATGATACGCTAGAGGAAATTGTGGGCGTCAGGGGT 387
|.|||||.||.||.||.||||||.||||.||||||||.||..|..|.||.
BPUM_1635___y 338 TGACGGGAAAACCATACGATACGTTAGAAGAAATTGTAGGAATTCGCGGC 387
BSNT_02800___ 388 GGAGAAAACGCTGGATCGTTAAAGGATTTTCAAATCGGCTATAATGCGGT 437
..||||....|.||.||.|||||.||.||.||.||.|..||.||.||..|
BPUM_1635___y 388 AAAGAAGGGACAGGCTCATTAAAAGACTTCCAGATTGATTACAAGGCCAT 437
BSNT_02800___ 438 TGATCTGACG-AAAGACGGAAAGATAGACTATGATGC----------AGT 476
||||.|| || .||||.|||....|.||.||||| | |||
BPUM_1635___y 438 TGATTTG-CGCCAAGATGGATCCGTTGATTATGA--CAACGTAAAAAAGT 484
BSNT_02800___ 477 CGCCGCTGCGATCAATC--CGAAGACAAAAGTAATCGGCATTCAGCGCTC 524
||||| || |.||.||||||||.|||||.||||||||.||
BPUM_1635___y 485 --------CGATC--TCCTCTAAAACAAAAGTGATCGGTATTCAGCGTTC 524
BSNT_02800___ 525 AAAAGGATATGCGAATC--GCCCTTCTTTCTTAATTAGTGAAATAAAAGA 572
||||||.|||||| || |.|||||.||...||||...|||||..|..|
BPUM_1635___y 525 AAAAGGTTATGCG--TCAAGACCTTCCTTTACAATTGAAGAAATCGAGCA 572
BSNT_02800___ 573 AATGATCCGTTTTGTAAAAGAAGTCAATGAAAACCTGATCGTCTTTGTGG 622
||||||....|||||.||||...|.||||||.|..|.||.||.|||||||
BPUM_1635___y 573 AATGATTTCATTTGTGAAAGGGATTAATGAAGAAATCATTGTGTTTGTGG 622
BSNT_02800___ 623 ACAACTGTTACGGAGAATTTGTGGAAGAGCTTGAGCCATGCCATGTTGGA 672
||||||||||.||.||||||...|||...|..||||||||.|||||.|||
BPUM_1635___y 623 ACAACTGTTATGGTGAATTTACTGAACTACAAGAGCCATGTCATGTGGGA 672
BSNT_02800___ 673 GCCGATCTGATGGCGGGATCTCTCATTAAAAATCCCGGCGGCGGCCTTGC 722
||.|||||.|||||.||.||.||.||||||||.||.||||||||.|||||
BPUM_1635___y 673 GCGGATCTTATGGCCGGTTCCCTTATTAAAAACCCAGGCGGCGGGCTTGC 722
BSNT_02800___ 723 GAAAACAGGCGGCTACCTCGTCGGAAAAGCGAAATGGATTGAAGCTTGCT 772
.|||||.|||||||||.||||.|||||||..||||||.|.||||||||||
BPUM_1635___y 723 CAAAACTGGCGGCTACATCGTTGGAAAAGAAAAATGGGTAGAAGCTTGCT 772
BSNT_02800___ 773 CATACCGTATGACGTCACCTGGCATCGGCAGAGAAGCGGGGGCATCTCTT 822
|.||.||.|||||.||.||.|||||||||||.||||||||.||.||.||.
BPUM_1635___y 773 CTTATCGAATGACATCTCCGGGCATCGGCAGTGAAGCGGGTGCCTCGCTG 822
BSNT_02800___ 823 TACTCGCTCCAAGAAATGTACCAAGGCTTCTTTTTGGCGCCTCACGTTGT 872
||..||||.||.||.|||||.|||||.||.||.||.||.||.||.|||||
BPUM_1635___y 823 TATGCGCTTCAGGAGATGTATCAAGGATTTTTCTTAGCACCGCATGTTGT 872
BSNT_02800___ 873 GTCTCAAAGTTTAAAGGGAGCGGTGTTTACAGCGAGATTCCTTGAAAAAC 922
|.|.|||||.|||||.||.||.|||||.||.||..|.||.|||||.||.|
BPUM_1635___y 873 GGCGCAAAGCTTAAAAGGTGCAGTGTTCACGGCTCGTTTTCTTGAGAAGC 922
BSNT_02800___ 923 TCGGCTTCACTTCAAACCCGAA------ATGGGATGCGAAAAGAACGGAC 966
|.||.||| |||| |||| ||||.|||||||||||||.||.
BPUM_1635___y 923 TTGGATTC----CAAA--CGAACCCAGCATGGAATGCGAAAAGAACAGAT 966
BSNT_02800___ 967 TTAATACAATCCGTTGAGTTTTCAGA-CAGAGAAAAGATGATTGCTTTTT 1015
|||||.||||||||.||.|||..||| |..| |||||||||||||.||.|
BPUM_1635___y 967 TTAATTCAATCCGTCGAATTTGGAGATCCTA-AAAAGATGATTGCATTCT 1015
BSNT_02800___ 1016 GCCAGGCTATTCAATTTGCATCGCCAATCAATGCTCATGTGACGCCTTAT 1065
|||||||.|||||||.||||||.||.|||||...|||.||.||.||..||
BPUM_1635___y 1016 GCCAGGCGATTCAATATGCATCTCCGATCAACAGTCACGTCACACCGCAT 1065
BSNT_02800___ 1066 CCAGCCTACATGCCGGGATACGAGGATGATGTCATTATGGCAGCAGGCAC 1115
.||..|||.|||||||||||||||||||||||||||||||||||.|||||
BPUM_1635___y 1066 GCAAGCTATATGCCGGGATACGAGGATGATGTCATTATGGCAGCGGGCAC 1115
BSNT_02800___ 1116 GTTTATTCAAGGAGCAAGCATCGAATTATCAGCTGATGGCCCTATCCGCC 1165
.||..|.|||||.||.||.||||||||.|||||.|||||.||.|||.|.|
BPUM_1635___y 1116 TTTCGTCCAAGGGGCTAGTATCGAATTGTCAGCCGATGGACCGATCAGAC 1165
BSNT_02800___ 1166 CGCCGTATGTAGCGTATGTTCAGGGAGGATTGACCTATTCGCATGTGAAG 1215
|.||.|||..|||.||||||||.||.|||.|.||.|||.|.|||||.||.
BPUM_1635___y 1166 CACCTTATACAGCCTATGTTCAAGGTGGACTCACGTATGCACATGTAAAA 1215
BSNT_02800___ 1216 AATGCCATATGCAGTGCAGTGGATTCATTGATGGAA-AAG---------- 1254
|||||.||.||||||||.||.|||.|.||..||||| |||
BPUM_1635___y 1216 AATGCAATTTGCAGTGCTGTAGATGCCTTATTGGAACAAGGTTTTATCGA 1265
BSNT_02800___ 1255 ----------CAATTAATTTAA 1266
||||.|
BPUM_1635___y 1266 CATACCTGCTCAATAA------ 1281
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