Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02787 and BPUM_1623
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_02787___ymaF.1.24716.seq
# -bsequence dna-align/BPUM_1623___ymaF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02787___ymaF-BPUM_1623___ymaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02787___ymaF-BPUM_1623___ymaF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02787___ymaF
# 2: BPUM_1623___ymaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 433
# Identity: 284/433 (65.6%)
# Similarity: 284/433 (65.6%)
# Gaps: 59/433 (13.6%)
# Score: 869.5
#
#
#=======================================
BSNT_02787___ 1 TTGGGCCTGTATCAGTCTGACTGGTCAAAAGCACCGCCCCACGCACATGC 50
.||||||||||||..|||||.|||.|||||...|||||.||.||.|||||
BPUM_1623___y 1 ATGGGCCTGTATCCATCTGATTGGGCAAAATGTCCGCCTCATGCTCATGC 50
BSNT_02787___ 51 CTATCATGTCAA-AAC------AACGAGAGAACAGGGCCATTATCATCTC 93
.|||.|.| ||| ||| ||| ||||.|| |||||||||.|.
BPUM_1623___y 51 TTATAAAG-CAAGAACGGATGTAAC---AGAAGAG---CATTATCATTTA 93
BSNT_02787___ 94 ATTGAAGGGTTTACTCAGCCGGCAAACGGATCAAATACCGATCAGCATAC 143
||.|||||..||.|.||.||.|..||.|||...|.|||||||||||||||
BPUM_1623___y 94 ATAGAAGGTATTTCCCAACCTGTCAATGGAAGCAGTACCGATCAGCATAC 143
BSNT_02787___ 144 ACATTACTATACAGGGATCACTTCATTTGAAAACGGCCATTTTCATCGGT 193
.|||||||||...||.||||||||.|||||.|..||.|||||.||..|.|
BPUM_1623___y 144 TCATTACTATCGCGGAATCACTTCTTTTGAGAGGGGGCATTTCCACAGAT 193
BSNT_02787___ 194 ATTACGGAATCTCAGGGCCGGCGATTCCCTTAGCAGATGGCACACATTAT 243
||||.||.|||.|||||||.|||||.||...||..||.||.||.||||||
BPUM_1623___y 194 ATTATGGTATCACAGGGCCTGCGATACCGAGAGTGGACGGTACGCATTAT 243
BSNT_02787___ 244 CATGAAATCGAAGAAACGACATA-TCTGGCTTATAACGA------GCCGA 286
||.||.||.||.|||...||.|| ||| ||.|||||||| .||.|
BPUM_1623___y 244 CACGAGATTGAGGAAGTCACGTATTCT-GCCTATAACGATTCTGTCCCTA 292
BSNT_02787___ 287 TTGAGATCCAGTACGGAGGGGTTGTGT---------ACGATCCCGGAGAT 327
| |||| ||.|||||.||.||.| |||| ||||..
BPUM_1623___y 293 T-----TCCA-TATGGAGGAGTCGTCTTTAGTCCCGACGA----GGAGCG 332
BSNT_02787___ 328 GACAGAAGAAAAACGCAT-CGTCATAACC---TAAAAGGAAAGACAAGGG 373
|.| ||||||| || .||| |.||||||||.|||...|
BPUM_1623___y 333 GCC--------AACGCATACG----CACCGTTTGAAAGGAAAAACATATG 370
BSNT_02787___ 374 AAATTGTCGGCAATGAGCCGCTCGGCTGGTAG- 405
||.|.||.||.|||||.||.||.||.|||| |
BPUM_1623___y 371 AAGTGGTTGGAAATGAACCACTTGGTTGGT-GA 402
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