Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02785 and BPUM_1620

See Amino acid alignment / Visit BSNT_02785 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:26
# Commandline: needle
#    -asequence dna-align/BSNT_02785.1.24716.seq
#    -bsequence dna-align/BPUM_1620___ebrA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02785-BPUM_1620___ebrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02785-BPUM_1620___ebrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02785
# 2: BPUM_1620___ebrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 335
# Identity:     173/335 (51.6%)
# Similarity:   173/335 (51.6%)
# Gaps:          94/335 (28.1%)
# Score: 462.0
# 
#
#=======================================

BSNT_02785         0 --------------------------------------------------      0
                                                                       
BPUM_1620___e      1 ATGATCCTTGGATATCTTTTTCTAGCTGTGGCCATTTTTTCAGAAGCCAT     50

BSNT_02785         1 ----------ATGCTGAAAGTATCTGATGGCTTCAAAAAGTGG----AAG     36
                               |||.|.|||.|.||..|||||||    .|.|.|    |||
BPUM_1620___e     51 TGGCGCCGTGATGTTAAAATTCTCGAATGGCTT----TACTCGCTTTAAG     96

BSNT_02785        37 CCAAGTGCTTTGGTCGTCATTGGCTATTCCCTCGCCTTTTATATGCTGTC     86
                     ||.||.|||.|.||.||...|||||||.|.||.||||||||||||.||||
BPUM_1620___e     97 CCGAGCGCTGTCGTTGTGGCTGGCTATACACTTGCCTTTTATATGTTGTC    146

BSNT_02785        87 CCTGACTTTAAACCAT-ATTCCCCTCAGCCTCTCCTATGCGACTTGGAGC    135
                     ..||||..|.|| .|| |||||.||.|||.|.||.|||||.||.|||...
BPUM_1620___e    147 ATTGACACTGAA-TATCATTCCGCTTAGCATGTCTTATGCAACATGGTCT    195

BSNT_02785       136 GGGGCGGGCACAGTGCTGACGACAGTGATCGGAGTAAAATGGTTCAAGGA    185
                     ||||..||.|||||.||.|||.|..|..|.||.||....|..|||||.||
BPUM_1620___e    196 GGGGTTGGTACAGTCCTCACGGCTATTTTTGGCGTGCTTTTTTTCAAAGA    245

BSNT_02785       186 AGATC-TGAATGCCAAAGGGC-----TT---ATCGGGATTCTTTTATTAC    226
                     | |.| ||||  |||||..||     ||   ||.|.|||.|||      .
BPUM_1620___e    246 A-ACCTTGAA--CCAAAAAGCAGTCATTGGGATGGCGATGCTT------G    286

BSNT_02785       227 TATCAGGGGTCGTGTTACTT---AATTGGCCGTAA    258
                     |.||||||||||   |||||   |||..|.|.|||
BPUM_1620___e    287 TCTCAGGGGTCG---TACTTTTAAATATGTCATAA    318


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