Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02784 and BPUM_1619
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:26
# Commandline: needle
# -asequence dna-align/BSNT_02784___ebrB.1.24716.seq
# -bsequence dna-align/BPUM_1619___ebrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02784___ebrB-BPUM_1619___ebrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02784___ebrB-BPUM_1619___ebrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02784___ebrB
# 2: BPUM_1619___ebrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 406
# Identity: 246/406 (60.6%)
# Similarity: 246/406 (60.6%)
# Gaps: 89/406 (21.9%)
# Score: 685.0
#
#
#=======================================
BSNT_02784___ 1 ATGAGAGGATTGCTTTATTT----GGCTCTCGCCATTGTATCTGAAGTGT 46
||||.||||.||||.||||| || .||.|||.|..|.||.||.|
BPUM_1619___e 1 ATGAAAGGAATGCTCTATTTAACAGG----AGCTATTTTGACAGAGGTTT 46
BSNT_02784___ 47 TTGGGAGCACGATGTTGAAGCTTTCAGAAGGATTTACACAAGCCTGGCCC 96
||||.||.||||||.|.|||||||||.||||.|||.|.|||
BPUM_1619___e 47 TTGGCAGTACGATGCTAAAGCTTTCACAAGGTTTTTCGCAA--------- 87
BSNT_02784___ 97 AT--TGCCGGAGTCATAG---------TCGGATTTCTTTCTGCTTTTACG 135
|| |||| |||| ||.| ||||||||...|.|||.|||||.
BPUM_1619___e 88 ATGCTGCC-GAGT-ATTGGGGTTCTGATCGGATTTGGGTTTGCCTTTACA 135
BSNT_02784___ 136 TTTCTAAGCTTTTCT-----TTAAAAACAATTGACTTATCAAGCGCGTAT 180
||.||.|| ||| || |||||.||||||.|.||....||.|||
BPUM_1619___e 136 TTCCTCAG----TCTGGCACTT-AAAACGATTGACCTTTCGTCTGCTTAT 180
BSNT_02784___ 181 GCAACATGGTCGGGCGTTGGTACCGCGCTTACAGCAATTGTCGGGTTTTT 230
||.||||||||.||.|||||.||.||.||.||.||..||.||||..||.|
BPUM_1619___e 181 GCGACATGGTCTGGTGTTGGAACAGCACTCACTGCTCTTATCGGACTTGT 230
BSNT_02784___ 231 GCTTTTTGGCGAAACCAT---CAGTTTAAAAGG-TGTATTCGGTCTCACG 276
|.|.||||.||||||||| || ||||||| |..||| |||||..|.
BPUM_1619___e 231 GATATTTGACGAAACCATTCACA---TAAAAGGCTTCATT-GGTCTTGCA 276
BSNT_02784___ 277 CTTGTCAT-TGCAGGCGTGATCGTGCT-------------AAATC----- 307
||.||.|| ||| ||||||||.|| || |||.|
BPUM_1619___e 277 CTAGTGATATGC-GGCGTGATTGT-CTTGAATTTGTCAAAAAAACAAAAA 324
BSNT_02784___ 308 ----AATCGAAAGCCCACGCTGAA--GATAAAA---AACAGACGGCCTGT 348
||.||||||..|| || |||.||| ||..|||| .|.|
BPUM_1619___e 325 GAAGAAACGAAAGAACA-----AATCGATCAAACCGAATGGACG--TTAT 367
BSNT_02784___ 349 GAGTGA 354
.|
BPUM_1619___e 368 AA---- 369
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