Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02747 and BPUM_1603
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_02747___tdh.1.24716.seq
# -bsequence dna-align/BPUM_1603___tdh.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02747___tdh-BPUM_1603___tdh.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02747___tdh-BPUM_1603___tdh.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02747___tdh
# 2: BPUM_1603___tdh
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1127
# Identity: 729/1127 (64.7%)
# Similarity: 729/1127 (64.7%)
# Gaps: 145/1127 (12.9%)
# Score: 2105.5
#
#
#=======================================
BSNT_02747___ 1 ATGCAGAGTGGAAAGATGAAAGCTCTAATGAAAAAGGACGGGGCGTTCGG 50
|| |.||||||.|||||||||..|..|.|||||.||..|.||.|.|||
BPUM_1603___t 1 AT---GTGTGGAACGATGAAAGCAATTGTTAAAAAAGAAAGCGCTTACGG 47
BSNT_02747___ 51 TGCTGTGCTGACTGAAG-TTCCCATTCCTGAGATTGATAAACATGAAGTC 99
.||.|||.||| ||.|| |.||.|||||.||.||..||.|.||||||||.
BPUM_1603___t 48 AGCGGTGTTGA-TGGAGATGCCGATTCCAGAAATCAATGATCATGAAGTA 96
BSNT_02747___ 100 CTCATAAAAGTGAAAGCCGCTTCCATATGCGGCACGGATGTCCACATTTA 149
.|.|||.|.||.||||||.|.||.||||||||.||.||.||.||.|||||
BPUM_1603___t 97 TTGATACAGGTAAAAGCCACATCGATATGCGGAACAGACGTGCATATTTA 146
BSNT_02747___ 150 TAATTGGGATCAATGGGCACGTCA----GAGAATCAAAACACCCTATGTT 195
||||||||||.|.|||||| | ||||.|.|||.|.|||||..||
BPUM_1603___t 147 TAATTGGGATGATTGGGCA----AAGGGGAGAGTGAAAGCGCCCTACATT 192
BSNT_02747___ 196 TTCGGCCATGAGTT--CAGCGGCATCGTAG--AGGACGTGGGAGAGAATG 241
||.||.|||||.|| |||.||.| ||.| |.||| ||||.||.|.|
BPUM_1603___t 193 TTTGGACATGAATTTACAGGGGAA--GTTGTCAAGAC--GGGAAAGCAAG 238
BSNT_02747___ 242 TCATTA-GTGTAAAAGTGGGAGAGTATGTGTCTGCGGAAACACACATTGT 290
|| |.| |||.||||||.||.||.|.|||.||.||.||.||.||..||||
BPUM_1603___t 239 TC-TCACGTGCAAAAGTAGGGGATTTTGTATCGGCAGAGACTCATGTTGT 287
BSNT_02747___ 291 CTGTGGTGAAT--GTGTCCCT---TGCCTAACAGG--AAAATCTCATGTG 333
.||| ||| ||| |.|| ||..||||.|| ||.|.|.|.||||
BPUM_1603___t 288 ATGT----AATCAGTG-CTCTATGTGTTTAACTGGGCAACAGCACTTGTG 332
BSNT_02747___ 334 TGTACCAAT---ACTGCTATAATCGGAGTGGACACGGCAGGCTGTTTTGC 380
| ||| ||....||..|.||.||.||||..|..||.||||||||
BPUM_1603___t 333 T-----AATGAAACGAAAATTTTAGGGGTAGACATTGACGGGTGTTTTGC 377
BSNT_02747___ 381 GGAGTATGTAAAAGTTCCAGCTGATAATATTTGGAGAAATCCCGCTGATA 430
.||.|||||.|||||.||.|...|.|||.|.|||...|||||.|||.|.|
BPUM_1603___t 378 TGAATATGTCAAAGTACCTGAACAAAATGTGTGGCACAATCCAGCTCAAA 427
BSNT_02747___ 431 TGGACCCGTCGA--TTGCTTCCATTCAAGAGCCTTTAGGAAATGCAGTTC 478
|| ||.||.|| ||||.||.|||||||||||..|.||||||||.||||
BPUM_1603___t 428 TG--CCAGTAGAGCTTGCGTCTATTCAAGAGCCGCTTGGAAATGCGGTTC 475
BSNT_02747___ 479 ATACCGTACTCGAGAGCCAGCCTG---CAGG--AGGAACGACTGCAGTG- 522
||||.||.||..|.| || |||| |||| || .|||||
BPUM_1603___t 476 ATACAGTGCTTCACA--CA-CCTGTTTCAGGTAAG--------TCAGTGG 514
BSNT_02747___ 523 -----ATTGGATGCGGACCGATTGGTCTTATGGCTGTTGCGGTTGCAAAA 567
.||||.||||||||.||.|||.|.|||||..|.||.||.||.|||
BPUM_1603___t 515 CGATTTTTGGCTGCGGACCAATCGGTTTAATGGCGATCGCCGTCGCGAAA 564
BSNT_02747___ 568 GCAGCAGGAGCT-TCTCAGGTGATAGCGATTGATAAGAATGAATACAGGC 616
||..|.||.||| || ||.|||.|.||..|.|||.|.||..|||||||||
BPUM_1603___t 565 GCTTCCGGTGCTGTC-CAAGTGTTTGCTGTCGATCAAAACCAATACAGGC 613
BSNT_02747___ 617 TGAGGCTTGCAAAACAAATGGGAGC-GACTTGTACTGTTTCTATT-GAAA 664
||...|||||.|...|||||||.|| ||| ..||..||...|||| ||||
BPUM_1603___t 614 TGGATCTTGCTAGGAAAATGGGGGCAGAC-CATATCGTGGATATTGGAAA 662
BSNT_02747___ 665 AAGAAAACCCGCTCAAAATTG-------TAAGC-GCTTTAACGAGTGGGG 706
|.|..|.||.| ||| ||||| | ||.|||.|...||
BPUM_1603___t 663 AGGTGATCCTG-------TTGAGGTGATTAAGCAG--TTCACGCGGATGG 703
BSNT_02747___ 707 AAGGAGCAGATCTTGTTTGTGAGATGTCGGGTCATCCCTCAGCGATTGCC 756
||||.||||||.|..|.||.||.|||||.||.|||| ||| |||||
BPUM_1603___t 704 AAGGCGCAGATGTGATATGCGAAATGTCAGGACATC---CAG---TTGCC 747
BSNT_02747___ 757 ------CAAGGTCTTGCG--ATGGCTGCGAATGGCGGAAGATTTCATATT 798
||||.|||.|.| ||| |||.|||||.||.|.|.|..||||.
BPUM_1603___t 748 ATTAATCAAGCTCTCGAGTCATG--TGCAAATGGAGGGAAAGTGAATATC 795
BSNT_02747___ 799 CTCAGCTTGCCGGAACATCCGGTGACAATTGATTTGACGAATAAAGTGGT 848
|||||.||||||||||..||.|||||||||||..|.||||||.||.|.||
BPUM_1603___t 796 CTCAGTTTGCCGGAACGACCAGTGACAATTGACATTACGAATCAAATTGT 845
BSNT_02747___ 849 ATTTAAAGGGCTT-ACCATCCAAGGAATCACAGGAAGAAAAATGTTTTCA 897
|||.|.|||.|| |||.|.|||||.|||||.||.||||||||||||...
BPUM_1603___t 846 -TTTTAGGGGATTAACCGTGCAAGGGATCACGGGGAGAAAAATGTTTGAG 894
BSNT_02747___ 898 ACATGGCGCCAGGTGTCTCAGTTGATCAGTTCAAACG----TGATCGATC 943
||.|||||.||.||.|||.||||..|.|| |||| ..||||||
BPUM_1603___t 895 ACGTGGCGTCAAGTATCTGAGTTATTAAG----AACGAATACCATCGAT- 939
BSNT_02747___ 944 TTGCA-CCTGTTATTACCCAT-CAGTTTCCGTTAGAGGAGTTTGAAAAAG 991
.|.|| ||.|||.|.|||||| || .|.||.||.||..||||.|||||.|
BPUM_1603___t 940 GTCCAGCCAGTTGTCACCCATACA-CTGCCATTTGAACAGTTCGAAAAGG 988
BSNT_02747___ 992 GTTTCGAACTGATGAGAAGCGGGCAGTGCGGAAAA---GTAATTTTAATT 1038
|.||.|||||.|||||||..||...|||||||||| |||.|..|.||.
BPUM_1603___t 989 GATTTGAACTCATGAGAAATGGTACGTGCGGAAAAGTCGTACTGATGATG 1038
BSNT_02747___ 1039 CCATAA--------------------- 1044
||||.|
BPUM_1603___t 1039 CCATCAAATCAAAGGGGGAAGAAATGA 1065
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