Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02727 and BPUM_1585
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:22
# Commandline: needle
# -asequence dna-align/BSNT_02727___spoIIIE.1.24716.seq
# -bsequence dna-align/BPUM_1585___spoIIIE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02727___spoIIIE-BPUM_1585___spoIIIE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02727___spoIIIE-BPUM_1585___spoIIIE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02727___spoIIIE
# 2: BPUM_1585___spoIIIE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2492
# Identity: 1769/2492 (71.0%)
# Similarity: 1769/2492 (71.0%)
# Gaps: 247/2492 ( 9.9%)
# Score: 6247.5
#
#
#=======================================
BSNT_02727___ 1 GTGGC---AAAGAAAAAACGAAAATCAAGAAAAAAACAGGCGAAACAGCT 47
.|||| |||||.||||||.|||.|.|||||||||||....||||||||
BPUM_1585___s 1 ATGGCGAAAAAGAGAAAACGGAAAACGAGAAAAAAACAAAATAAACAGCT 50
BSNT_02727___ 48 AAATATAAAATACGAGCTCAACGGATTGCTGTGTATAGCCATTTCAATTA 97
|||..|.|||||.||..|.||.||.||..|.|||||.|||||..|.||.|
BPUM_1585___s 51 AAAACTGAAATATGAATTAAATGGGTTAGTCTGTATTGCCATAGCGATCA 100
BSNT_02727___ 98 TCGCAATCTTGCAGCTGGGGGTAGTCGGGCAAACGTTTATCTATTTGTTC 147
|.||.||.||.|||||.||.||.||.||.|||||.||..|.|||||.|||
BPUM_1585___s 101 TTGCCATTTTACAGCTAGGCGTCGTTGGACAAACCTTCGTATATTTATTC 150
BSNT_02727___ 148 CGCTTTTTTGCTGGAGAGTGGTTTATTTTATGCTTGTTAGGTTTATTGGT 197
||.||||||||.||.||.|||||.|||.|.|||.|..|.||.|||||..|
BPUM_1585___s 151 CGATTTTTTGCAGGTGAATGGTTCATTCTCTGCCTTATCGGATTATTTCT 200
BSNT_02727___ 198 GTTAGGAGTCTCACTGTTTTGGAAGAAAAAAACCCCAAGCCTT-TTAACG 246
.||.||.|||.|..|.||.|||||.|||.|||.||| ||..|| ||.||.
BPUM_1585___s 201 TTTTGGCGTCACCATCTTCTGGAAAAAACAAATCCC-AGATTTGTTGACA 249
BSNT_02727___ 247 AGACGAAAGGCCGGGTTGTACTGTATCATCGCAAGCATATTGCTGCTTTC 296
||..|||||||.|||||.|||||.|||||.||.||.||.|||||..|.||
BPUM_1585___s 250 AGGAGAAAGGCAGGGTTATACTGCATCATTGCGAGTATCTTGCTTTTGTC 299
BSNT_02727___ 297 TCACGTGCAGCTATTTAA--AAATTTGA--CGCACAAAGGGT-CTATTGA 341
|||.|||.||||.|||.| |..|||.| .|| |||| |.||.|.
BPUM_1585___s 300 TCATGTGAAGCTCTTTCAGCACCTTTCATCTGC-----GGGTGCAATAGG 344
BSNT_02727___ 342 GTCTGCAAGCGTGGTGCGCAATACGTGGGAATTG---TTTT--TAATGGA 386
.|||..|||.|||.|..|.||||| |.||| |||| |.|||||
BPUM_1585___s 345 CTCTCAAAGTGTGATCAGAAATAC-----ATTTGAGCTTTTCCTGATGGA 389
BSNT_02727___ 387 CATGAATGG-----CA-GCTCTGCTTCACCTGATTTAGGCGGAGGGATGA 430
||||||.|| || |.||| |||||||||||.||.||.||||
BPUM_1585___s 390 CATGAAAGGTGAGACAGGATCT------CCTGATTTAGGAGGCGGCATGA 433
BSNT_02727___ 431 TCGGTGCGCTGCTGTTTGCGACTTCACACTTTTTGTTTGCGTCGA-CTGG 479
|||||||..|..|.|||||..||||..|.||.||.||||| .|.| |.||
BPUM_1585___s 434 TCGGTGCCGTATTATTTGCTGCTTCTTATTTCTTATTTGC-ACAAGCAGG 482
BSNT_02727___ 480 TTCTCAGATCATGGCAATTGTCATGATTTTGATCGGAATGAT----TTTA 525
.|||||.|||||||||||.||..||||..||||.|||||..| .|||
BPUM_1585___s 483 CTCTCAAATCATGGCAATCGTTCTGATGCTGATTGGAATTGTGCTCATTA 532
BSNT_02727___ 526 GTAACTGGGCGCTCGCTACAAGAAACGCT-AAAAAAGTGGATGA----GC 570
..|| .||.||.||.|||||||.|.| ||.|||| ||| ||
BPUM_1585___s 533 CAAA----TCGATCTCTTCAAGAAATGGTGAAGAAAG----TGACACTGC 574
BSNT_02727___ 571 CCGATTGGACGTTTTAT--AAAAGAACAATGGTTAGCATTTATTGATGAT 618
|.| |...||..||||| ..||| ||.|||..|||.|||.||||.|||
BPUM_1585___s 575 CTG-TCTCACAATTTATGGTGAAG--CAGTGGAAAGCGTTTGTTGAAGAT 621
BSNT_02727___ 619 ATGAAATCCTTCAAATCAAATATACAGTCA-TCGAAAAAAACGAAAGCGC 667
|||||| ..||| |||.|| .|||||| |.|||||
BPUM_1585___s 622 ATGAAA----------GGAAT---CAGGCAGGCGAAAA-----AGAGCGC 653
BSNT_02727___ 668 CGAGCAAAAAACAAAAACCGGCCCGCAAAAAACAGC--AAATG--GAACC 713
| || |||.||.|||||.|| |||.| .||.|
BPUM_1585___s 654 C----------------CC--CCCTCAGAAAACGGCTGAAAAGAAAAAAC 685
BSNT_02727___ 714 GGAGCCTCCTGAT----GAAGAGGGGGA-------------TTA--TGAA 744
| |.|||.| || |||||||..|| ||| ||||
BPUM_1585___s 686 G--GTCTCGT-ATTCAGGAAGAGGACGAAGATGATCAAATCTTAGTTGAA 732
BSNT_02727___ 745 ACAGTATCGCCTCT---------TATTCATTCAGAGCCGATTATCTCAAG 785
...|.|.||||..| ||.|| ||||||||||.|||||
BPUM_1585___s 733 GAGGAAGCGCCGATGCCTGACAATAGTC------AGCCGATTATTTCAAG 776
BSNT_02727___ 786 CTTTTCTGA-----------------------TCGT---AATGAAGAGGA 809
||||.|||| |||| || |||||.|
BPUM_1585___s 777 CTTTGCTGACAGAGATGACATTCTCACCCCGCTCGTTCAAA--AAGAGCA 824
BSNT_02727___ 810 AGAGTCTCCAGTTATAGAAAAGCG----CGCC-------GAACCTGTGTC 848
.|.|.| |||||.| |||| |||.||||| |
BPUM_1585___s 825 GGTGGC-----------AAAAGAGACAACGCCTCTTCAAGAATCTGTG-C 862
BSNT_02727___ 849 GAA----GCCGCTTCAGGACATCCAACCGGAGA--CAGGTGAT----CAG 888
.|| ||||..|| |||| ||| |||.|||| ||.
BPUM_1585___s 863 AAAGTACGCCGTCTC----CATC-------AGATTCAGCTGATGAACCAA 901
BSNT_02727___ 889 GAAACTGTTTCTGCTCCTCCTATGACCTTTACAGAGCTCGAAAATAAGGA 938
.|.| |||.||.||||||||.|||||.||.||.|||||.||.||
BPUM_1585___s 902 AAGA-------TGCGCCGCCTATGACGTTTACGGAACTTGAAAACAAAGA 944
BSNT_02727___ 939 TTACGAGATGCCGTCACTGGATTTGCTGGCAGATCCGAAGCATACCGGCC 988
.|||||..||||||||||||||.|..|||||||.|||.||||..|.||.|
BPUM_1585___s 945 CTACGAATTGCCGTCACTGGATATTTTGGCAGAGCCGCAGCACTCAGGAC 994
BSNT_02727___ 989 AGCAGGCTGATAAAAAGAATATTTATGAAAATGCGAGAAAGCTTGAACGC 1038
||||..|.||.||.||||||||.|||||||||||.||||||||||||...
BPUM_1585___s 995 AGCAAACAGACAAGAAGAATATATATGAAAATGCAAGAAAGCTTGAAAAA 1044
BSNT_02727___ 1039 ACATTCCAAAGCTTTGGCGTAAAGGCGAAAGTCACACAGGTTCATCTCGG 1088
||.||.||||||||.||||||||.||.|||||.|||||||||||..|.||
BPUM_1585___s 1045 ACGTTTCAAAGCTTCGGCGTAAAAGCAAAAGTTACACAGGTTCACTTAGG 1094
BSNT_02727___ 1089 ACCGGCCGTAACAAAATATGAAGTATATCCTGATGTCGGAGTGAAGGTTA 1138
|||.|||||.||.|||||||||||.|||||.||||||||.||||||||||
BPUM_1585___s 1095 ACCAGCCGTCACCAAATATGAAGTCTATCCAGATGTCGGCGTGAAGGTTA 1144
BSNT_02727___ 1139 GCAAAATTGTCAATTTAAGCGATGATTTAGCGCTTGCGCTTGCTGCGAAG 1188
|.||.||||||||..||||.|||||.|||||.||.||.||.||.||.||.
BPUM_1585___s 1145 GTAAGATTGTCAACCTAAGTGATGACTTAGCCCTAGCTCTCGCAGCAAAA 1194
BSNT_02727___ 1189 GATATCAGGATCGAAGCGCCTATACCAGGCAAATCAGCAATCGGAATTGA 1238
|||||..||||.||.|||||.||.||.||.||||||||.|||||.|||||
BPUM_1585___s 1195 GATATTCGGATTGAGGCGCCGATTCCTGGGAAATCAGCCATCGGTATTGA 1244
BSNT_02727___ 1239 AGTTCCAAACGCAGAAGTGGCAATGGTTTCGCTGAAAGAAGTGCTGGAGT 1288
.|||||.||.||||||.|.||.||||||||..|.|||||.||..|.||.|
BPUM_1585___s 1245 GGTTCCTAATGCAGAAATTGCGATGGTTTCTTTAAAAGAGGTATTAGAAT 1294
BSNT_02727___ 1289 CTAAATTGAATGACAGACCGGATGCGAAGCTGTTAATTGGACTCGGCCGC 1338
|.||....||||||.|.||..|||||||||||.|.|||||||||||||||
BPUM_1585___s 1295 CGAAGCAAAATGACCGTCCAAATGCGAAGCTGCTGATTGGACTCGGCCGC 1344
BSNT_02727___ 1339 AATATTTCAGGTGAAGCTGTATTGGCTGAGTTAAACAAGATGCCCCACCT 1388
||||||||.||||||||.||..|.|||||..|.|||||.|||||.|| |
BPUM_1585___s 1345 AATATTTCGGGTGAAGCCGTGCTCGCTGAAATGAACAAAATGCCGCA--T 1392
BSNT_02727___ 1389 TT--TGGTCGCAGGCGCAACCGGTAGCGGGAAAAGTGTCTGTGTCAACGG 1436
|| |.||.|||||..|.||.||.|||||.||||||||.||..||||.||
BPUM_1585___s 1393 TTACTTGTAGCAGGATCGACAGGAAGCGGAAAAAGTGTGTGCATCAATGG 1442
BSNT_02727___ 1437 CATTATTACAAGTATTTTAATGCGGGCGAAACCGCATGAAGTGAAAATGA 1486
||||||.|||||||||.|.|||.|.||||||||.||||||||.|||||||
BPUM_1585___s 1443 CATTATCACAAGTATTCTCATGAGAGCGAAACCTCATGAAGTAAAAATGA 1492
BSNT_02727___ 1487 TGATGATCGATCCTAAAATGGTAGAGCTAAATGTCTACAACGGGATTCCG 1536
|||||||.|||||.||||||||.||..|||||||.||.||.||.||.|||
BPUM_1585___s 1493 TGATGATTGATCCGAAAATGGTTGAATTAAATGTGTATAATGGCATCCCG 1542
BSNT_02727___ 1537 CATTTGCTTGCTCCTGTTGTAACCGATCCGAAAAAAGCGTCGCAGGCTTT 1586
|||.||||.|||||.||||||||.||.||.||.||||||||.|||||..|
BPUM_1585___s 1543 CATCTGCTCGCTCCCGTTGTAACGGACCCTAAGAAAGCGTCACAGGCACT 1592
BSNT_02727___ 1587 GAAAAAGGTTGTCAATGAAATGGAGCGGCGGTACGAATTATTTTCTCATA 1636
||||||.||.||||.|||||||||.||.||.||.|||||.||||||||||
BPUM_1585___s 1593 GAAAAAAGTCGTCAGTGAAATGGAACGCCGCTATGAATTGTTTTCTCATA 1642
BSNT_02727___ 1637 CGGGTACAAGAAATATTGAAGGATACAATGATTATATAAATCGCGCCAAC 1686
|.||.|||||||||||||||||.|||||||||||.||.||.||
BPUM_1585___s 1643 CAGGGACAAGAAATATTGAAGGGTACAATGATTACATTAAACG------- 1685
BSNT_02727___ 1687 AATGA-------AGAAGGAGCGAAACAGCCAGAGCTGCCTTATATTGTTG 1729
||||| |||||..||||||||||||||.||.|||||||||||.|
BPUM_1585___s 1686 AATGAATCAATCAGAAGAGGCGAAACAGCCAGAACTTCCTTATATTGTCG 1735
BSNT_02727___ 1730 TCATTGTGGACGAGCTTGCCGATCTCATGATGGTCGCTTCATCTGATGTG 1779
|||||||.|||||||||||.|||.|.||||||||||||||.||||||||.
BPUM_1585___s 1736 TCATTGTAGACGAGCTTGCAGATTTAATGATGGTCGCTTCCTCTGATGTA 1785
BSNT_02727___ 1780 GAAGATTCGATTACGAGATTGTCCCAAATGGCGCGGGCTGCCGGCATCCA 1829
||||||||.|||||.|||.|.||.||||||||.||.||.|||||.||.||
BPUM_1585___s 1786 GAAGATTCCATTACAAGACTTTCGCAAATGGCTCGTGCAGCCGGAATTCA 1835
BSNT_02727___ 1830 TCTTATTATTGCGACACAGCGGCCATCGGTGGATGTTATCACAGGGGTGA 1879
|.|.||||||||.|||||..|.||.||.||.|||||.||.|||||.||.|
BPUM_1585___s 1836 TTTAATTATTGCCACACAAAGACCTTCTGTCGATGTCATTACAGGAGTCA 1885
BSNT_02727___ 1880 TCAAAGCGAACATTCCGTCACGAATCGCGTTCAGCGTATCTTCACAGACG 1929
|.|||||.|||||.||.||.|||||.||.||.||.||.|||||.||.||.
BPUM_1585___s 1886 TTAAAGCCAACATCCCATCTCGAATTGCCTTTAGTGTGTCTTCGCAAACC 1935
BSNT_02727___ 1930 GATTCAAGGACCATTCTTGACATGGGTGGCGCTGAGAAGCTTCTTGGCCG 1979
|||||||||||.||.|||||.|||||.|||||.||.||.||.||||||.|
BPUM_1585___s 1936 GATTCAAGGACGATCCTTGATATGGGGGGCGCAGAAAAACTACTTGGCAG 1985
BSNT_02727___ 1980 CGGCGATATGCTGTTTTTACCTGTAGGGGCTAACAAACCTGTCCGTGTGC 2029
.||.||||||||||||.||||.||.|||||.||||||||.||.|||||||
BPUM_1585___s 1986 AGGGGATATGCTGTTTCTACCAGTCGGGGCAAACAAACCGGTTCGTGTGC 2035
BSNT_02727___ 2030 AGGGAGCATTTTTGTCGGATGACGAAGTGGAGAAGGTCGTCGACCATGTG 2079
||||.||.|||||.||.|||||.|||||.||..|.|||||.|||||||||
BPUM_1585___s 2036 AGGGCGCCTTTTTATCTGATGAAGAAGTAGAACATGTCGTTGACCATGTG 2085
BSNT_02727___ 2080 ATTACACAGCAGAAAGCGCAATATCAAGAAGAAATGATTC---CTGAGGA 2126
||.||.|||||.|||||||||||||||||||||||||||| ||||.||
BPUM_1585___s 2086 ATCACTCAGCAAAAAGCGCAATATCAAGAAGAAATGATTCCAACTGAAGA 2135
BSNT_02727___ 2127 GACGACGGAAACTCA--TTCCGAG--GTTACTGATGAACTTTATGATGAA 2172
.|||..||| ||| ||.| || ||...||||||..|.|||||||||
BPUM_1585___s 2136 AACGCAGGA---TCAGCTTGC-AGCTGTGGATGATGATTTATATGATGAA 2181
BSNT_02727___ 2173 GCTGTTGAATTAATCGTCGGCATGCAGACGGCATCTGTTTCAATGCTGCA 2222
||.||.|||.|.|||.||||||||||||||||.|||||.||.|||||.||
BPUM_1585___s 2182 GCAGTGGAACTCATCATCGGCATGCAGACGGCTTCTGTCTCTATGCTTCA 2231
BSNT_02727___ 2223 AAGAAGATTCAGAATTGGCTATACGAGAGCGGCGCGCCTGATTGACGCAA 2272
|||.||||||.|.||.||||||||..|.||.||.|||||||||||.||||
BPUM_1585___s 2232 AAGGAGATTCCGTATCGGCTATACCCGGGCTGCCCGCCTGATTGATGCAA 2281
BSNT_02727___ 2273 TGGAGGAACGCGGTGTTGTCGGACCGTATGAAGGCAGCAAACCTAGGGAA 2322
||||.||.||.||.||||||||.||.||||||||.||.|||||.||.|||
BPUM_1585___s 2282 TGGAAGAGCGAGGCGTTGTCGGTCCTTATGAAGGAAGTAAACCGAGAGAA 2331
BSNT_02727___ 2323 GTATTATTATCAAAAGAGAAATATGATGAGCTCTCTTCTTAA 2364
||..|..|.||||||||..|||||||.|||||||||||.|||
BPUM_1585___s 2332 GTCCTGCTTTCAAAAGAACAATATGACGAGCTCTCTTCATAA 2373
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