Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02726 and BPUM_1584

See Amino acid alignment / Visit BSNT_02726 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:22
# Commandline: needle
#    -asequence dna-align/BSNT_02726.1.24716.seq
#    -bsequence dna-align/BPUM_1584.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02726-BPUM_1584.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02726-BPUM_1584.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02726
# 2: BPUM_1584
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     155/250 (62.0%)
# Similarity:   155/250 (62.0%)
# Gaps:          50/250 (20.0%)
# Score: 448.5
# 
#
#=======================================

BSNT_02726         1 ATGATTCTTTATAC---CGTGATGCCGCAGGAA---ATTGTGTTTGCAGA     44
                     |||||  |||||||   |.| |||||..|.|||   |||   |..||.||
BPUM_1584          1 ATGAT--TTTATACACACCT-ATGCCATATGAAGCCATT---TACGCGGA     44

BSNT_02726        45 ACAGAACCAAGAGA---CAAGCGCACATGAGCAAATTGAATAT-AAAGGT     90
                       .||||.|.||||   |||    ||.|.|.| |..|.||||| .||||.
BPUM_1584         45 --GGAACAAGGAGATCGCAA----ACTTCAAC-AGGTAAATATCCAAGGC     87

BSNT_02726        91 GTACCGCTTCTAGTCGAAATGAAAGGGAATGAAGCGGAAGTCATTCAAAT    140
                     ||.||..||.|.||.||||||||||.|.|||||||.|||.||.|||||.|
BPUM_1584         88 GTTCCAGTTATGGTTGAAATGAAAGAGGATGAAGCAGAAATCGTTCAAGT    137

BSNT_02726       141 CATGAGCACCAATCCAATGCATTTTCTGCATCCGGACATTTCACCCGG--    188
                     |||||||||.|||||||||.||||||||.|||..||..||.||||.||  
BPUM_1584        138 CATGAGCACAAATCCAATGGATTTTCTGAATCAAGAGCTTGCACCAGGCA    187

BSNT_02726       189 -------------ACAA--AAGCTGAAATTAAA------CGTATAA----    213
                                  ||||  |.|||..|||.|||      |.|||.|    
BPUM_1584        188 AGCGATTGAAGTTACAATTAGGCTCCAATCAAACCGACTCATATGAATGA    237


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.