Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02704 and BPUM_1566
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_02704___infB.1.24716.seq
# -bsequence dna-align/BPUM_1566___infB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02704___infB-BPUM_1566___infB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02704___infB-BPUM_1566___infB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02704___infB
# 2: BPUM_1566___infB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2187
# Identity: 1696/2187 (77.5%)
# Similarity: 1696/2187 (77.5%)
# Gaps: 102/2187 ( 4.7%)
# Score: 6683.0
#
#
#=======================================
BSNT_02704___ 1 ATGGCTAAAATGAGAGTATACGAATATGCAAAAGCGTTAAATGTTTCAAG 50
|||||||||.||||||||||.|||||.||||||||..||.||||||||||
BPUM_1566___i 1 ATGGCTAAAGTGAGAGTATATGAATACGCAAAAGCCATAGATGTTTCAAG 50
BSNT_02704___ 51 TAAGGAAATTTTGACCGCACTGAAGAACATGGATTTAGAAGTGAATAATC 100
|||.||.|||.|..|.||.||.|||.|.|||.|..|.||||||||.||.|
BPUM_1566___i 51 TAAAGATATTATAGCAGCGCTTAAGGATATGAACGTGGAAGTGAACAACC 100
BSNT_02704___ 101 ACATGGCCATGCTTGAAGAAAAGGCCATTAAAAAGCTAGATGCCAAATAT 150
|||||||.|.|||||||||..|..|..|.|||||||||||.||.|..|||
BPUM_1566___i 101 ACATGGCGACGCTTGAAGACGACACTGTGAAAAAGCTAGACGCTATCTAT 150
BSNT_02704___ 151 AAAAAAGGCGGCGCAGCTGCTAAATCTCAAAAGCCAGC-----AGAAAC- 194
|||||| ||.|||.|..||.||.|||| ||||||
BPUM_1566___i 151 AAAAAA------------GCCAAAGCAAAAGAGACAGCTAACGAGAAACC 188
BSNT_02704___ 195 ----GAACAAAAACAAACAGCCACAAGGGGTTAATCAGCAATCAGCTGGA 240
|||||||||.|| ||||||.||
BPUM_1566___i 189 CGCAGAACAAAAAAAA----------------------CAATCATCT--- 213
BSNT_02704___ 241 AATCAACCAAATAAAATTCGAGACGGAAAGAAGAATGACGTGCAGAATAA 290
|||.||||.|| .||..|||||||||||||||||||||||||
BPUM_1566___i 214 ----AACAAAATCAA-----TGATAGAAAGAAGAATGACGTGCAGAATAA 254
BSNT_02704___ 291 TCAATTTAACAAAAACAAGAAGAATAACAAC---AACAAA---AAAAATA 334
|||||||||.||||||||.||.||.|||||| |||||| |||||||
BPUM_1566___i 255 TCAATTTAATAAAAACAAAAAAAACAACAACCAAAACAAAAACAAAAATA 304
BSNT_02704___ 335 AACGC------AACAACAACAATAATAAAAAC-CAACATCAGCAA---AA 374
||||| ||.||| |||.| ||.|||||.||| |.
BPUM_1566___i 305 AACGCGGTGGGAATAAC----------AAATCGCAGCATCAACAAGCTAG 344
BSNT_02704___ 375 GCCTGTAAAGCCGAAAAAAGAGCTTCCTGAGAAAATTACATTCTCTGGCA 424
.||||||||.||.|||||||||||||||||.||||||..|||..|| |
BPUM_1566___i 345 ACCTGTAAAACCTAAAAAAGAGCTTCCTGAAAAAATTGAATTTACT---A 391
BSNT_02704___ 425 CTT---TAACAGTTGGCGCA-CTTGCTGAAGAGCTTGGCAAAGAGCCTTC 470
.|| |.|||||.|| .|| ||.||||||||||||||.|||||..|..|
BPUM_1566___i 392 ATTCAATGACAGTCGG-ACAGCTGGCTGAAGAGCTTGGAAAAGAAACAGC 440
BSNT_02704___ 471 AGAAATCATTAAAAAGCTGATGCTTCTTGGCGTAATGGCAACTATTAACC 520
.|||||.||.||||||||||||.|.|||||.||.||||||||.|||||||
BPUM_1566___i 441 TGAAATTATCAAAAAGCTGATGATGCTTGGTGTTATGGCAACCATTAACC 490
BSNT_02704___ 521 AAGAGCTTGATAAAGACACAATCGAACTCATTGCATCAGAATATGGTGTT 570
|||||||.||||||||.|||.|.|||.|.||.||.||.||||||||.|||
BPUM_1566___i 491 AAGAGCTGGATAAAGATACAGTTGAATTAATCGCTTCTGAATATGGCGTT 540
BSNT_02704___ 571 GAAACAGAAGAGGTCATTGTGCTTGAAGAAACAGAGCTGGAAAAATACGA 620
..|..|||.||.||||||.|..|.||||||||.||.||.|||||.||.||
BPUM_1566___i 541 CCAGTAGAGGAAGTCATTATTTTAGAAGAAACTGAACTTGAAAAGTATGA 590
BSNT_02704___ 621 AGAGCCT----GATAATGAAGAGGATCTTGAAATTCGTCCTCCTGTCGTG 666
|| | |||||.|||||.|||.|..||.|.||.|||||.||.|||
BPUM_1566___i 591 AG----TTGAAGATAAAGAAGAAGATATGCAAGTACGCCCTCCAGTTGTG 636
BSNT_02704___ 667 ACAATCATGGGCCACGTTGACCATGGGAAAACAACGCTTCTTGACAGCAT 716
||.||||||||.|||||||||||.||||||||||||||||||||||||||
BPUM_1566___i 637 ACGATCATGGGACACGTTGACCACGGGAAAACAACGCTTCTTGACAGCAT 686
BSNT_02704___ 717 CCGTAAAACAAAGGTTGTTGAAGGAGAAGCAGGCGGAATCACTCAGCATA 766
.|||||.||.||.|||||||||||.||||||||.||||||||.|||||||
BPUM_1566___i 687 TCGTAAGACGAAAGTTGTTGAAGGTGAAGCAGGTGGAATCACGCAGCATA 736
BSNT_02704___ 767 TCGGCGCTTATCAAATTGAAGAGAACGGCAAGAAAATCACGTTTTTGGAT 816
||||.||.||.|||||||||||.||.|||||||||||||||||..|.|||
BPUM_1566___i 737 TCGGTGCATACCAAATTGAAGAAAATGGCAAGAAAATCACGTTCCTTGAT 786
BSNT_02704___ 817 ACACCGGGCCACGCCGCATTTACAACAATGCGTGCACGCGGTGCAGAAGT 866
|||||.||.|||||.||.||||||||.|||||||||||.|||||.||.||
BPUM_1566___i 787 ACACCTGGACACGCAGCTTTTACAACGATGCGTGCACGTGGTGCCGAGGT 836
BSNT_02704___ 867 AACTGATATTACGATTCTTGTCGTAGCTGCCGATGACGGTGTCATGCCGC 916
|||.||||..||.|||||.||.||.||.||.|||||.||.||.|||||||
BPUM_1566___i 837 AACGGATACAACCATTCTAGTTGTTGCAGCAGATGATGGCGTTATGCCGC 886
BSNT_02704___ 917 AAACAGTTGAAGCGATTAACCATGCAAAAGCAGCAGAGGTTCCAATCATC 966
||||.||||||||.|||||||||||.|||||||||||.||.||||||||.
BPUM_1566___i 887 AAACGGTTGAAGCCATTAACCATGCGAAAGCAGCAGAAGTACCAATCATT 936
BSNT_02704___ 967 GTTGCTGTGAATAAAATAGATAAAGAATCCGCAAACCCTGACCGTGTGAT 1016
||||||||.||||||||.||.|||..|.|.||.|||||||||||||||||
BPUM_1566___i 937 GTTGCTGTCAATAAAATTGACAAACCAACAGCGAACCCTGACCGTGTGAT 986
BSNT_02704___ 1017 GCAAGAACTGACGGAATACGGACTTGTCCCTGAAGCTTGGGGCGGAGAAA 1066
|||.|||.|.||.||..|.||.||.||.|||||||||||||||||.||||
BPUM_1566___i 987 GCAGGAATTAACCGAGCATGGTCTAGTACCTGAAGCTTGGGGCGGCGAAA 1036
BSNT_02704___ 1067 CCATTTTTGTGCCGCTTTCCGCTTTAACTGGAAAAGGCATTGATGAGCTC 1116
|.||.||.||.||.||.||.||...|||.||..||||||||||.||..|.
BPUM_1566___i 1037 CGATCTTCGTTCCTCTATCTGCAAAAACAGGTGAAGGCATTGACGAATTG 1086
BSNT_02704___ 1117 GTTGAAATGATTTTGCTTGTCAGTGAGGTAGAGGAACTGAAAGCGAATCC 1166
.|.||||||||..|.|||||||||||.||.|..|||||||||||.||.||
BPUM_1566___i 1087 ATCGAAATGATCCTTCTTGTCAGTGAAGTTGGAGAACTGAAAGCCAACCC 1136
BSNT_02704___ 1167 GAACCGTCAGGCAAAAGGAACGGTTATTGAAGCTGAACTCGATAAAGGCA 1216
.||.|||..||||||||||||.|||||.||.|||||.||.||||||||.|
BPUM_1566___i 1137 AAATCGTGCGGCAAAAGGAACTGTTATCGAGGCTGAGCTTGATAAAGGAA 1186
BSNT_02704___ 1217 GAGGGTCAGTCGCGACATTGCTCGTACAGACTGGAACACTGCATGTCGGT 1266
||||.||.||.||.||..|.||.||.||.|||||.|||||.|||||.|||
BPUM_1566___i 1187 GAGGATCTGTTGCAACCCTTCTTGTTCAAACTGGTACACTTCATGTAGGT 1236
BSNT_02704___ 1267 GATCCGATCGTAGTCGGCAATACATTTGGCCGTGTCCGTGCAATGGTTAA 1316
||.||.|||||.|||||.|||||||||||||||||.|||||||||||.||
BPUM_1566___i 1237 GACCCAATCGTTGTCGGAAATACATTTGGCCGTGTACGTGCAATGGTCAA 1286
BSNT_02704___ 1317 CGACATTGGCCGCCGTGTGAAAACTGCCGGCCCGTCAACTCCGGTTGAAA 1366
.|||||.||.|||||.||||||||.||.||.||.||.||.||.|||||||
BPUM_1566___i 1287 TGACATCGGACGCCGCGTGAAAACAGCAGGACCATCTACACCTGTTGAAA 1336
BSNT_02704___ 1367 TTACCGGTTTGAATGATGTCCCTCAAGCGGGAGACCAATTCCTTGTCTTT 1416
|.||.|||||.||.|||||.||..|.||.||.||.||||||||.||.||.
BPUM_1566___i 1337 TCACTGGTTTAAACGATGTACCGAATGCAGGGGATCAATTCCTCGTATTC 1386
BSNT_02704___ 1417 AAGGATGAAAAAACAGCTCGTTCTGTCGGTGAAGCCCGTGCTTCGAAACA 1466
||.||||||||||||||||||...||.|||||.||.||||||||.|||||
BPUM_1566___i 1387 AAAGATGAAAAAACAGCTCGTCAAGTAGGTGAGGCGCGTGCTTCAAAACA 1436
BSNT_02704___ 1467 GCTTGAAGAGCAGCG--CAGCGATAAAGCGAAGCTCAGTCTTGATGATTT 1514
||||||.||.||||| || ||.||||||||.||...|||.|||||..|
BPUM_1566___i 1437 GCTTGATGAACAGCGTTCA--GACAAAGCGAAACTATCTCTAGATGACCT 1484
BSNT_02704___ 1515 ATTCGAGCAAATTAAGCAAGGTGATGTAAAAGACATCAACCTCATCGTAA 1564
|||.||||||||.||.||||||||.||.|||||.||||||.|.|||||.|
BPUM_1566___i 1485 ATTTGAGCAAATCAAACAAGGTGAAGTGAAAGATATCAACTTGATCGTGA 1534
BSNT_02704___ 1565 AAGCTGACGTTCAAGGATCTGCTGAAGCTTTAACGGCTGCACTTCAAAAA 1614
||||.||.||.|||||.|||||||||||..|.||||||||.|||||||||
BPUM_1566___i 1535 AAGCAGATGTACAAGGTTCTGCTGAAGCACTGACGGCTGCTCTTCAAAAA 1584
BSNT_02704___ 1615 ATTGAAGTAGAAGGCGTTAAAGTGAAAATCATCCATACAGGCGTTGGTGC 1664
|||||||||||||||||.||||||||||||||||||||.||.|||||.||
BPUM_1566___i 1585 ATTGAAGTAGAAGGCGTAAAAGTGAAAATCATCCATACGGGTGTTGGAGC 1634
BSNT_02704___ 1665 GATTACTGAATCAGACATTATCTTGGCATCTGCTTCCAATGCAATTGTTA 1714
||||||.|||||.||.|||||.||.|||..||||||.|||||.||.||.|
BPUM_1566___i 1635 GATTACAGAATCTGATATTATTTTAGCAAGTGCTTCTAATGCGATCGTGA 1684
BSNT_02704___ 1715 TCGGGTTTAATGTGAGACCGGACGGAAATGCTAAGAGTACGGCTGAAGCT 1764
||||.|||||.||..|.||.||.||||||||.|||||.||.||||||.|.
BPUM_1566___i 1685 TCGGATTTAACGTACGTCCTGATGGAAATGCGAAGAGCACAGCTGAAACA 1734
BSNT_02704___ 1765 GAAAATGTAGATATTCGACTTCACCGTATCATTTACAAAGTAATCGACGA 1814
|||||.||||||||.||..|.|||||.||.|||||.|||||.|||||.||
BPUM_1566___i 1735 GAAAACGTAGATATCCGTTTACACCGCATTATTTATAAAGTCATCGATGA 1784
BSNT_02704___ 1815 GATTGAAGCTGCCATGAAAGGTATGCTTGATCCTGAATATGAAGAAAAAG 1864
.||||||||.||.||||||||.||||||||.|||||||||||||||||||
BPUM_1566___i 1785 AATTGAAGCAGCGATGAAAGGAATGCTTGACCCTGAATATGAAGAAAAAG 1834
BSNT_02704___ 1865 TAATTGGTCAAGTAGAAGTACGCCAAACATTCAAAGTATCTAAAATCGGT 1914
|.||.||||||||.|||||.||.|||||.|||||||||||||||||.|||
BPUM_1566___i 1835 TCATCGGTCAAGTTGAAGTTCGTCAAACGTTCAAAGTATCTAAAATTGGT 1884
BSNT_02704___ 1915 ACAATTGCCGGCGGATATGTTACTGAAGGAACCATTACGCGCGACAGCGG 1964
||||||||.||.||.|||||.||||||||||||||.||..|.||.||.||
BPUM_1566___i 1885 ACAATTGCTGGTGGTTATGTCACTGAAGGAACCATCACAAGAGATAGTGG 1934
BSNT_02704___ 1965 CCTCCGTTTAATTCGTGACGGCGTCGTCATCTTTGAAGGCGAAGTAGATG 2014
..||||.|||||.||||||||||||||.||.||||||||||||||.||.|
BPUM_1566___i 1935 TATCCGCTTAATCCGTGACGGCGTCGTTATTTTTGAAGGCGAAGTCGACG 1984
BSNT_02704___ 2015 TTCTGAAACGCTTTAAAGACGATGTGAAAGAAGTTTCACAAGGCTATGAA 2064
|..|.|||||.||.|||||.||.|||||||||||||||||.|||||||||
BPUM_1566___i 1985 TATTAAAACGATTCAAAGATGACGTGAAAGAAGTTTCACAGGGCTATGAA 2034
BSNT_02704___ 2065 TGTGGTATTACAATTAAGAAATACAATGACATTCGTGAAGGTGACATCCT 2114
|||||||||||.||||||||.|||||.||.||.|||||||||||..||.|
BPUM_1566___i 2035 TGTGGTATTACCATTAAGAAGTACAACGATATCCGTGAAGGTGATGTCAT 2084
BSNT_02704___ 2115 TGAAGCGTTTGTCATGCAAGAAATTGAAAGAACGTGA 2151
.|||.|.||.||.|||||||||||.|||||||..|||
BPUM_1566___i 2085 GGAATCATTCGTTATGCAAGAAATCGAAAGAAAATGA 2121
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