Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02702 and BPUM_1565

See Amino acid alignment / Visit BSNT_02702 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_02702.1.24716.seq
#    -bsequence dna-align/BPUM_1565___ylxQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02702-BPUM_1565___ylxQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02702-BPUM_1565___ylxQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02702
# 2: BPUM_1565___ylxQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 306
# Identity:     184/306 (60.1%)
# Similarity:   184/306 (60.1%)
# Gaps:          78/306 (25.5%)
# Score: 703.5
# 
#
#=======================================

BSNT_02702         0 --------------------------------------------------      0
                                                                       
BPUM_1565___y      1 ATGAATCAATCTGAATGGTATCCTTTGCTTGGTCTAGCAAATCGAGCTCG     50

BSNT_02702         1 -----------------------TTGGTAATAAAAGAAATCAGGAATGCG     27
                                            || ||.||.||||||||.||..|||||
BPUM_1565___y     51 TAAAGTCGTGTCAGGAGAAGATCTT-GTGATCAAAGAAATTAGACATGCG     99

BSNT_02702        28 CGTGCAAAGCTTGTCCTGCTTACAGAGGATGCATCATCTAACACAGCAAA     77
                     |||||.|||||.||.||.|||.|||..|||||.|||||.|||||||..||
BPUM_1565___y    100 CGTGCTAAGCTGGTTCTTCTTGCAGCAGATGCCTCATCGAACACAGAGAA    149

BSNT_02702        78 AAAAGTAACTGACAAGTGCAATTATTATAAAGTCCCTTATAAAAAAGTCG    127
                     |||.|||.|||||||.|||||.|.||||||.||.||...||.||||||.|
BPUM_1565___y    150 AAAGGTATCTGACAAATGCAAATTTTATAATGTTCCGGTTAGAAAAGTTG    199

BSNT_02702       128 AGAGTCGCG--CGGTTCTTGGACGCTCTATCGGTAAAGAAGCCCGTGTCG    175
                     | ||.| ||  |.|||||.|||||.|||||.||.||||||||.||.||.|
BPUM_1565___y    200 A-AGAC-CGTTCCGTTCTCGGACGTTCTATTGGGAAAGAAGCTCGCGTAG    247

BSNT_02702       176 TTGTCGCCGTCACTGACCAAGGTTTTGCGAATAAGCTGATCAGCTTGCTC    225
                     |||||||.||||||||||||||.||.||.||.|||||.||.|||||||||
BPUM_1565___y    248 TTGTCGCTGTCACTGACCAAGGCTTCGCTAAGAAGCTTATAAGCTTGCTC    297

BSNT_02702       226 GATTAA    231
                     ||||||
BPUM_1565___y    298 GATTAA    303


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