Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02690 and BPUM_1552

See Amino acid alignment / Visit BSNT_02690 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:18
# Commandline: needle
#    -asequence dna-align/BSNT_02690___uppS.1.24716.seq
#    -bsequence dna-align/BPUM_1552___uppS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02690___uppS-BPUM_1552___uppS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02690___uppS-BPUM_1552___uppS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02690___uppS
# 2: BPUM_1552___uppS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 799
# Identity:     593/799 (74.2%)
# Similarity:   593/799 (74.2%)
# Gaps:          32/799 ( 4.0%)
# Score: 2139.0
# 
#
#=======================================

BSNT_02690___      1 ATGCTCAACATACTCAAAAATTGGAAGAATCAGCAAACTGCGGCTTCCAA     50
                     ||||||||.||||||||||||||||||||||||||||||||.||||||||
BPUM_1552___u      1 ATGCTCAATATACTCAAAAATTGGAAGAATCAGCAAACTGCAGCTTCCAA     50

BSNT_02690___     51 CTTAGAACGTTATACAAAAGAAGACATACTTAAGGGAGAAATTCCCGAAC    100
                     |||||||.||...|||||||||||||||.|.||.|||||||||||.||||
BPUM_1552___u     51 CTTAGAAAGTCTGACAAAAGAAGACATATTAAATGGAGAAATTCCTGAAC    100

BSNT_02690___    101 ACATCGCCATTATCATGGATGGAAATGGCCGTTGGGCTAAAAAACGCTCT    150
                     |.||||||||||||||||||||.||.||..|.|||||.||||||||..||
BPUM_1552___u    101 ATATCGCCATTATCATGGATGGGAACGGAAGATGGGCGAAAAAACGTGCT    150

BSNT_02690___    151 CTTCCCAGAATTGCAGGCCACCATGAAGGGATGAAGGTGGTAAAAAGGAC    200
                     |||||..|..|.|||||.||.||||||||.|||||.||.||.||..|.|.
BPUM_1552___u    151 CTTCCACGGGTAGCAGGACATCATGAAGGAATGAAAGTCGTCAAGCGCAT    200

BSNT_02690___    201 CACGAAGCTCGCAAACGAATTAGGTGTCAAAGTACTGACATTGTATGCAT    250
                     .||.|||||.|||||.||..|...|||||||||.|||||.||||||||.|
BPUM_1552___u    201 GACAAAGCTTGCAAATGAGCTGAATGTCAAAGTGCTGACTTTGTATGCTT    250

BSNT_02690___    251 TTTCAACAGAAAACTGGAAAAGACCGAAAATGGAAGTCGATTTTTTAATG    300
                     |||||||.|||||.||||||.|.||.|||.|.|||||.||.|||||||||
BPUM_1552___u    251 TTTCAACGGAAAATTGGAAACGTCCAAAACTAGAAGTAGACTTTTTAATG    300

BSNT_02690___    301 AAGCTTCCGGAAGAATTTTTGAATACGTATCTTCCAGAGCTTGTTGAGGA    350
                     ||.|||||.||||||||||||||.|..||.||.||.|||||..|.|||||
BPUM_1552___u    301 AAACTTCCTGAAGAATTTTTGAACATCTACCTGCCCGAGCTCATCGAGGA    350

BSNT_02690___    351 AAATGTACAGGTTCGGATCATTGGGGAT-GAAACGGCTTTGCCGGC-GCA    398
                     ||||||.|..||.||..|.|..||.||| .|.|||||.|  ||.|| |||
BPUM_1552___u    351 AAATGTTCGTGTGCGCTTAACAGGTGATCCAGACGGCCT--CCCGCAGCA    398

BSNT_02690___    399 CACATTACGTGCGATTGAAAAAGCTGTACAGGACACGGCGCAAAACGACG    448
                     .||...|.|.|||.|.||.||.||.|||.||...|||.||.|.|||||||
BPUM_1552___u    399 TACGAAAAGAGCGGTAGAGAACGCAGTAAAGAGTACGACGAATAACGACG    448

BSNT_02690___    449 GAATGATCCTTAATTTTGCTCTTAACTATGGAGGCCGTACTGAAATTGTC    498
                     ||.|..|..|.||||||||.||.|||||||||||.||.||.|||||.|||
BPUM_1552___u    449 GACTCGTTTTGAATTTTGCGCTCAACTATGGAGGGCGCACAGAAATCGTC    498

BSNT_02690___    499 AGTGC-TGCA---AAATCACTCGCGGAAAAAGTGAAGGAAGGCTCTTTGA    544
                     ...|| ||||   ||||..||    ||||||||.||.|||||      .|
BPUM_1552___u    499 TCCGCATGCAGGCAAATTTCT----GAAAAAGTCAAAGAAGG------TA    538

BSNT_02690___    545 ATATT------GAAGACATTGATGAATCGCTTTTTTCTACTTATTTGATG    588
                     |..||      ||||||||....|||..|.|.|||||..|||||||.|||
BPUM_1552___u    539 AGCTTCAAGCAGAAGACATCACAGAAGAGATGTTTTCAGCTTATTTAATG    588

BSNT_02690___    589 ACTGAATCTTTGCAGGATCCTGAACTTT--TAATTCGAACGAGCGGCGAG    636
                     ||.||||||.|.||.|||||.||  |||  |.|||||.||.||.||.||.
BPUM_1552___u    589 ACAGAATCTCTTCAAGATCCGGA--TTTGCTTATTCGCACAAGTGGAGAA    636

BSNT_02690___    637 ATAAGGCTGAGTAATTTTATGCTATGGCAGGTTGCCTACAGTGAATTTGT    686
                     ||.||..|.||.||.||||||||.|||||..||||.|||||.||||||||
BPUM_1552___u    637 ATTAGATTAAGCAACTTTATGCTTTGGCAAATTGCGTACAGCGAATTTGT    686

BSNT_02690___    687 CTTTACTGACGTCTTGTGGCCTGACTTTAAAGAAGATCACTTCTTGCAGG    736
                     ||||||.||.||..|.||||||||||||...||.||.||  ||||..|||
BPUM_1552___u    687 CTTTACGGATGTGCTATGGCCTGACTTTTCTGATGAGCA--TCTTATAGG    734

BSNT_02690___    737 CGTTA--GGAGAGTTTCAGCAGAGAGGCCGGAGGTTTGGCGGAATTTAG    783
                     ||.||  |||||.|..||||...|||||||||||||.||.|||||||||
BPUM_1552___u    735 CGCTATCGGAGAATACCAGCGCCGAGGCCGGAGGTTCGGTGGAATTTAG    783


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