Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02684 and BPUM_1547
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02684___ylxL.1.24716.seq
# -bsequence dna-align/BPUM_1547___ylxL.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02684___ylxL-BPUM_1547___ylxL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02684___ylxL-BPUM_1547___ylxL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02684___ylxL
# 2: BPUM_1547___ylxL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 630
# Identity: 330/630 (52.4%)
# Similarity: 330/630 (52.4%)
# Gaps: 207/630 (32.9%)
# Score: 871.0
#
#
#=======================================
BSNT_02684___ 1 GTGAAAAACATGTCAACACTATTATGGCTTTTAAGCTTTACGCTCCACGG 50
||| ||||||||..|.|||||.|.|||.||.|.
BPUM_1547___y 1 ---------ATG---------TTATGGCTGATTAGCTTCATGCTTCATGC 32
BSNT_02684___ 51 CGTTCTTCTGTACGCTGTCATTATCCTGTATACGAG-----GCTCGCTGC 95
.|..|||.|.||...|||.||.||..|.|||||||| ..||||||.
BPUM_1547___y 33 TGCACTTATTTATTTTGTGATCATTTTATATACGAGAATGAATTCGCTGA 82
BSNT_02684___ 96 AGTGAAAGAAACAGAAAAACAGCAAAAACAGATACTTGAAGAGACGGAAA 145
||..||...||| ||||.||||.|.||| |.||.|||||.|||||||
BPUM_1547___y 83 AGGCAACTGAAC--AAAAGCAGCGAGAAC---TTCTAGAAGAAACGGAAA 127
BSNT_02684___ 146 ACACCTTGGCGGCATTTCTGCTTGAATTAAAAGAAGAAAATGAGAAACTG 195
|.|||.||||.||||||.||.|.|||.|.||||||||.|||||.|||||
BPUM_1547___y 128 ATACCCTGGCTGCATTTTTGATGGAAGTCAAAGAAGAGAATGACAAACT- 176
BSNT_02684___ 196 ATAGAAAATAAA-----------GCTTC---------ATCTGC--AAGTC 223
||.|| ||||| .||||| |||
BPUM_1547___y 177 -------ATCAAAAGTGGCAGCCGCTTCCCCTGATTTTTCTGCTGAAG-- 217
BSNT_02684___ 224 AATCAGATGAAGAATC-------------CCAAA--AGTCAGGCCTTCAG 258
||.||| |||| ||||| ||.|| ||.
BPUM_1547___y 218 ----AGCTGA--AATCGGATTTTCAGACACCAAAGCAGCCA------CAA 255
BSNT_02684___ 259 ACCTC---TGAAACATATCAAGAGCGG-----------GATCCAGTCCAA 294
||..| ||||.|..|.|| |.||| ||||||||.|
BPUM_1547___y 256 ACACCAATTGAATCCCAGCA--ATCGGTAGAAAGTGAAGATCCAGTAC-- 301
BSNT_02684___ 295 GAGGCAGAGAATCT--TCCTGAACATATTGAAGGTCTGATTACAGAGGTT 342
|||||.| || || ||.|||..|||..||.|||
BPUM_1547___y 302 ----CAGAGCA-CTTGTC-------------AGCTCTCCTTAGCGAAGTT 333
BSNT_02684___ 343 GACCGT-CGGGAAGAGCTCGTAAAC------------------------- 366
|| .|| |.|||||||...||||||
BPUM_1547___y 334 GA-AGTGCAGGAAGAGAAGGTAAACGAACCCGTTCCACATCTTGAATCAG 382
BSNT_02684___ 367 --------------------AGTGAGGTCCAAT--------CATTTGAAG 388
||||| ||| ||||.||.|
BPUM_1547___y 383 AAGCTTCTGTGCCTTCTGAAAGTGA-----AATAGAAGAAACATTCGAGG 427
BSNT_02684___ 389 ACCAGGTCATAGA-ATTATATGA-ACAGGGATATTCGGC---AAGTCAAA 433
|.|||||.| ||| .|||||||| |.|||| .|||| || ||| |||
BPUM_1547___y 428 ATCAGGTGA-AGACCTTATATGACAAAGGG-CATTC-GCTAGAAG--AAA 472
BSNT_02684___ 434 TTGCCCAGAAAATGAAGAGCGGAAAGACAGAAATCGAGCTATTTTTAAAA 483
|.||..|..||.||||.|..||.|||||||||||||||||.||.||||||
BPUM_1547___y 473 TAGCGAAAGAACTGAAAACGGGCAAGACAGAAATCGAGCTTTTATTAAAA 522
BSNT_02684___ 484 TTTCGCTCCAAAGGTGTAAAGGATTCTTGA 513
|||.|| ..||||.|||||
BPUM_1547___y 523 TTTAGC-GGAAAGCTGTAA----------- 540
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