Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02677 and BPUM_1542
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:17
# Commandline: needle
# -asequence dna-align/BSNT_02677___cheA.1.24716.seq
# -bsequence dna-align/BPUM_1542___cheA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02677___cheA-BPUM_1542___cheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02677___cheA-BPUM_1542___cheA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02677___cheA
# 2: BPUM_1542___cheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2098
# Identity: 1493/2098 (71.2%)
# Similarity: 1493/2098 (71.2%)
# Gaps: 146/2098 ( 7.0%)
# Score: 5024.0
#
#
#=======================================
BSNT_02677___ 1 ATGGATATGAATCAGTATTTAGATGTCTTTATTGATGAGAGTAAAGAACA 50
.|||||.|.||.||.||.||||||.|||||.|.|||||.||.|.||||||
BPUM_1542___c 1 TTGGATGTAAACCAATACTTAGATATCTTTTTAGATGAAAGCAGAGAACA 50
BSNT_02677___ 51 TTTACAAACATGTAATGAAAAGCTTCTTCTTTTAGAGAAAG-ACCCGACT 99
.||||||||.|||||||||||.||||||..|||||| |||| ||||.||.
BPUM_1542___c 51 CTTACAAACTTGTAATGAAAAACTTCTTGATTTAGA-AAAGAACCCAACC 99
BSNT_02677___ 100 GATCTT-CAGCTCGTACATGATATATTCAGGGCTGCCCATACATTAAAAG 148
|| ||| |||||.||..|||||||||||||.||.||.||.|||||.||||
BPUM_1542___c 100 GA-CTTGCAGCTAGTGAATGATATATTCAGAGCCGCTCACACATTGAAAG 148
BSNT_02677___ 149 GAATGAGCGCAACGATGGGCTACACGGATTTAGCACACCTAACCCATCTG 198
|.|||||.|||||||||||||||.|.|||.|.||.||.|||||.||||..
BPUM_1542___c 149 GCATGAGTGCAACGATGGGCTACGCTGATATGGCTCAGCTAACACATCAT 198
BSNT_02677___ 199 CTTGAAAACGTGCTGGATG-CATTCCGAAACGGAGACATGGCAGTCACCT 247
.|.||||||.||.|.|||| |||| |||||.|.|.|.|||...|||||..
BPUM_1542___c 199 TTAGAAAACATGTTTGATGCCATT-CGAAATGAACAAATGATTGTCACAC 247
BSNT_02677___ 248 CAGACTGGCTGGATATTTTGTTTGAAGCTCTGGATCACCTGGAAGCAATG 297
|.||.|.|.||||.|...||||||||||.||.||||||||.|||||||||
BPUM_1542___c 248 CTGAGTCGATGGACACGATGTTTGAAGCGCTTGATCACCTTGAAGCAATG 297
BSNT_02677___ 298 GTTCAGTCTATTATTGATGGCGGGGATGGTAAAAGAGATATCTCAGAAGT 347
|||||.||.|||...||.|||||.|||||.|||.|.|||.||.||||..|
BPUM_1542___c 298 GTTCAATCAATTGCAGAAGGCGGAGATGGGAAACGCGATGTCACAGAGAT 347
BSNT_02677___ 348 GAGTGCCAAGCTTGATGTGA-ATGGTGCGCACGCTGAATCCGCTGCCTCC 396
.|||...||.||.||||||| |.|..|| ||.|||||..|.||| ||| .
BPUM_1542___c 348 TAGTAAAAAACTAGATGTGACAGGAAGC-CATGCTGAGGCAGCT-CCT-A 394
BSNT_02677___ 397 GCG--GAACTTGCAGAAGCA-CAGAGTTCAGCATCT------GATTGGGA 437
|.| |||..|||.||.|.| ||| |.||.||| ||.|..||
BPUM_1542___c 395 GTGTTGAAACTGCGGATGTATCAG----CGGCTTCTGCTAACGACTTAGA 440
BSNT_02677___ 438 ATATGATGAATTTGAACGTACAGTTATACAAGAAGCGGAGGAGCAAGGCT 487
.|||.|.|||||||||||.|||||..|..|.||||||..|||.|||||||
BPUM_1542___c 441 CTATAACGAATTTGAACGAACAGTGCTTGATGAAGCGAGGGAACAAGGCT 490
BSNT_02677___ 488 TCAAACGATATGAAATCAAGATTTCTC------TGAACGAAAACTGTATG 531
|.|||.|.||||||.||| ||.||.| || |||.| ||..|.
BPUM_1542___c 491 TTAAATGTTATGAACTCA--ATGTCACATTAAGTG-ACGCA---TGCTTA 534
BSNT_02677___ 532 TTAAAAGCAGTTCGTGTCTATATGGTGTTTGAAAAACTAAATGAAGTCGG 581
||||||||.|||||||||||||||.|.|||||||.|||.||.||||..||
BPUM_1542___c 535 TTAAAAGCGGTTCGTGTCTATATGATTTTTGAAAGACTGAACGAAGCAGG 584
BSNT_02677___ 582 AGAAGTAGCCAAAACAATTCCAAGTGCTGAAGTGCTTGAAACGGAAGATT 631
.||.||.|..||||||.||||||.|||.|||.|..|.|||.|.|||||||
BPUM_1542___c 585 CGAGGTCGTTAAAACAGTTCCAAATGCAGAACTTTTAGAATCAGAAGATT 634
BSNT_02677___ 632 TTGGAACTGATTTTCAAGT-----TTGTT--TCTTAACACATCAATCAGC 674
|.|.|.||||.|| .||| ||.|| |||.|||| |.||||
BPUM_1542___c 635 TCGAATCTGAATT--CAGTATTTCTTATTTATCTAAACA-ACCAAT---- 677
BSNT_02677___ 675 GGAAGACATTGAACAATTAAT--CAATGGCG-TGTCGGAAATTGAGCATG 721
|||.|| |.||||.|| ||| ..|||.|| |.||.|||.||||.||.|
BPUM_1542___c 678 GGACGA-AGTGAAGAA--AATTGTGATGACGATCTCAGAAGTTGAACAAG 724
BSNT_02677___ 722 TTGAAGTCATTCAAGGGGCT---CCTTT-----AACAT---CAGCCGAAA 760
||||..|| |||...|.|| |.||| |.||| ||||.||||
BPUM_1542___c 725 TTGAGATC--TCAGAAGTCTCTGCATTTGAAGAAGCATCTCCAGCTGAAA 772
BSNT_02677___ 761 AGCCTGA---AGAATCTAAGCAAGAAGATTCACCAGCAGCAGCTGTACCT 807
|.|..|| |.||.||.|.||.|||.| |..||.||.|.||||.|||
BPUM_1542___c 773 AACAAGAGGCAAAACCTGAACAGGAAAA---AGAAGAAGTATCTGTGCCT 819
BSNT_02677___ 808 GCGAAGCAGGAGAAA---CAAAAACAGCCTGCTAAAAACGATGAGC---A 851
|| .|.|||| | |||| ||||||||.|| |
BPUM_1542___c 820 GC------TGCGAAAGCCC-----CAGC-------AAACGATGCGCCAAA 851
BSNT_02677___ 852 GGCGAA--GCATT----------CAGCCGGCGGATCTAAAACAATTCGTG 889
.||.|| |||.| |.|||||||||.|.|||||.|||||.|
BPUM_1542___c 852 AGCAAATGGCAATAACGTTGCAGCTGCCGGCGGAACAAAAACGATTCGGG 901
BSNT_02677___ 890 TCAACATTGACAGGCTTGATTCTTTAATGAACTTATTTGAAGAGCTTGTC 939
|||||||||||.|.||.||||||.|.|||||..|.||||||||.||.||.
BPUM_1542___c 902 TCAACATTGACCGTCTCGATTCTCTCATGAATCTGTTTGAAGAACTGGTG 951
BSNT_02677___ 940 ATTGACCGCGGGCGTCTCGAGCAGATTGCGAAAGAGCTTGAGCACAATGA 989
||||||.|.||.|||.|.||.||||||||.|||||..|.||..|.|||||
BPUM_1542___c 952 ATTGACAGAGGACGTTTAGAACAGATTGCCAAAGAATTAGAAAATAATGA 1001
BSNT_02677___ 990 ACTGACTGAAACGGTTGAACGAATGACGAGAATTTCCGGAGATTTGCAAT 1039
||||||.||.||.||||||.|||||||..|.|||||.||||||.||||||
BPUM_1542___c 1002 ACTGACAGACACAGTTGAAAGAATGACACGTATTTCTGGAGATCTGCAAT 1051
BSNT_02677___ 1040 CGATTATTCTGAATATGAGAATGGTCCCGGTTGAAACTGTTTTTAACAGA 1089
||||.||..||||||||||||||||.||.||.|||||.||.||||||.||
BPUM_1542___c 1052 CGATCATCTTGAATATGAGAATGGTTCCTGTGGAAACGGTGTTTAACCGA 1101
BSNT_02677___ 1090 TTCCCGAGAATGATTCGCCAGCTT--CAGAAAGAGCTGAATAAAAAAATT 1137
|||||..|.||||||||.|| .|| || ||||||||||||||.||||||
BPUM_1542___c 1102 TTCCCTCGTATGATTCGTCA-ATTGACA-AAAGAGCTGAATAAGAAAATT 1149
BSNT_02677___ 1138 GAACTCTCGATCAT---CGGTGCGGAAACTGAACTGGATCGTACAGTAAT 1184
||||| |||.|| .|||||.|||||.||.||.|||||.|||||.||
BPUM_1542___c 1150 GAACT---GATTATTGAAGGTGCTGAAACAGAGCTTGATCGAACAGTTAT 1196
BSNT_02677___ 1185 TGATGAAATCGGAGATCCACTCGTTCACTTGATCAGAAACAGTATTGACC 1234
.||.||.||.||.|||||||||.|.|||||..|.||||||||..|.||.|
BPUM_1542___c 1197 CGACGAGATTGGTGATCCACTCTTACACTTACTTAGAAACAGCCTAGATC 1246
BSNT_02677___ 1235 ATGGTATCGAGGCGCCGGAAACACGTTTGCAAAAGGGAAAACCGGAATCA 1284
|.||.||.||..|.||.|||..||||.||.||||.||.||.||.|||..|
BPUM_1542___c 1247 ACGGAATTGAATCACCAGAAGAACGTGTGAAAAAAGGCAAGCCAGAAAAA 1296
BSNT_02677___ 1285 GGAAAAGTTGTGCTTAAAGCTTATCACAGCGGCAACCATGTCTTTATCGA 1334
||.|..|||.|..|.|||||.|||||.|||||.|||||.|||||.||.||
BPUM_1542___c 1297 GGTACCGTTCTATTAAAAGCGTATCATAGCGGAAACCACGTCTTCATTGA 1346
BSNT_02677___ 1335 AGTAGAGGATGACGGCGCAGGCCTTAATCGCAAAAAAATTCTGGAAAAAG 1384
||||||.||.||.||||..||..||||.||.||.|||.|.||.|||||||
BPUM_1542___c 1347 AGTAGAAGACGATGGCGGCGGAATTAACCGTAAGAAAGTGCTTGAAAAAG 1396
BSNT_02677___ 1385 CGCTTGAGCGCGGGGTCATAACGGAAAAAGAAGCTGAAAC-CTTAGAAGA 1433
|..|.|||||||||||.||.||.||.|.||||||.||.|| ||| |||||
BPUM_1542___c 1397 CATTAGAGCGCGGGGTTATTACAGATAGAGAAGCAGAGACACTT-GAAGA 1445
BSNT_02677___ 1434 CAACCAAATTTACGAATTGATTTTTGCTCCGGGGTTCTCAACTGCTGACC 1483
..|.||||||.|...|.||||.|||||..|.||.|||||.||.|||||..
BPUM_1542___c 1446 TCATCAAATTGATTCACTGATCTTTGCAGCAGGATTCTCTACAGCTGATA 1495
BSNT_02677___ 1484 AAATTTCTGATATTTCCGGCCGCGGTGTAGGACTTGACGTTGTAAAAAAC 1533
..||||||||.||.||.||||||||||||||.||||||||||||||||||
BPUM_1542___c 1496 CGATTTCTGACATCTCAGGCCGCGGTGTAGGCCTTGACGTTGTAAAAAAC 1545
BSNT_02677___ 1534 AAACTGGAGTCTCTTGGCGGTTCAGTCAGTGTGAAATCAGCCGAGGGTCA 1583
||.|||||.||.||.|||||.||.||.||..|.||.|||.|.||.||.||
BPUM_1542___c 1546 AAGCTGGAATCACTAGGCGGATCTGTAAGCATCAACTCAACAGAAGGACA 1595
BSNT_02677___ 1584 AGGCTCTCTATTCAGCATCCAGCTGCCGCTTACCTTGTCTATTATTTCAG 1633
.|||||.||||||...||||||||.||||||||.||.||.||||||||.|
BPUM_1542___c 1596 GGGCTCACTATTCTCGATCCAGCTTCCGCTTACATTATCGATTATTTCTG 1645
BSNT_02677___ 1634 TTCTGCTGATTAAGTTGGAAGAAGAGATATTTGCCATTCCGATTTCTTCA 1683
|.||.||..|.||..|||||||.||.|.||||||.||||||||||||||.
BPUM_1542___c 1646 TACTTCTTGTGAAACTGGAAGAGGAAACATTTGCGATTCCGATTTCTTCT 1695
BSNT_02677___ 1684 ATCATTGAGACAGCAGTTATTGACAGAAAA--GACATTTTGCAAACGCAT 1731
||.|||||.||.||.||.||| .|||||| |||||..|.|||||||||
BPUM_1542___c 1696 ATTATTGAAACGGCTGTCATT--AAGAAAAGCGACATCCTTCAAACGCAT 1743
BSNT_02677___ 1732 GACCGTGAAGTGATTGACTTTAGAGGGCATATTGTCCCTGTCGTTTATTT 1781
||.||||||||.|||||.||..|.||...|||.||.||.|||||.||.||
BPUM_1542___c 1744 GATCGTGAAGTAATTGATTTCCGCGGATTTATCGTACCGGTCGTGTACTT 1793
BSNT_02677___ 1782 AAAAGAAGAGTTTAAAATA--GAA---GATACAAGAA-AAGATGCGGAAC 1825
.||..||.|.||..|..|| ||| || |.||| .||| ||||.
BPUM_1542___c 1794 GAAGAAACAATTCCACGTACCGAATGCGA---ATGAATTAGA---GGAAG 1837
BSNT_02677___ 1826 AGCTCCATATCATTG----TCGTGAAAAAAGGCGACAAACCTACTGCATT 1871
|.||.||.|||||.| |||| |||||.||.||.|..||.|||||
BPUM_1542___c 1838 AACTGCACATCATCGTTGTTCGT----AAAGGAGATAAGCTGACAGCATT 1883
BSNT_02677___ 1872 TGTGGTGGACTCCTTTATTGGCCAGCAGGAAGTTGTGCTGAAATCACTCG 1921
||||||.|||||.||||||||.|||||.||.|||||..||||||||||.|
BPUM_1542___c 1884 TGTGGTCGACTCATTTATTGGACAGCAAGAGGTTGTATTGAAATCACTAG 1933
BSNT_02677___ 1922 GAGATTATTTAACAAACGTCTTTGCAATTTCCGGAGCTACTATTTTAGGA 1971
|||||||.||..|||||||.|||||.||.||.||.||.||.||..||||.
BPUM_1542___c 1934 GAGATTACTTGCCAAACGTGTTTGCGATCTCAGGCGCAACAATCCTAGGC 1983
BSNT_02677___ 1972 GACGGAGAAGTAGCGCTCATTATTGATTGTAATGCACTGATTATTTAA 2019
|||||..||||.||.|||||..||||.||||||||||||||.|..|||
BPUM_1542___c 1984 GACGGTCAAGTGGCACTCATCGTTGACTGTAATGCACTGATCAAGTAA 2031
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