Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02672 and BPUM_1538
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02672___flhA.1.24716.seq
# -bsequence dna-align/BPUM_1538___flhA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02672___flhA-BPUM_1538___flhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02672___flhA-BPUM_1538___flhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02672___flhA
# 2: BPUM_1538___flhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2060
# Identity: 1572/2060 (76.3%)
# Similarity: 1572/2060 (76.3%)
# Gaps: 52/2060 ( 2.5%)
# Score: 5843.0
#
#
#=======================================
BSNT_02672___ 1 ATGTCAACAAGAGATTTATCCGTTTTAATAAGTGTTGTCCTCATTGTGGC 50
||||||.|||||||||||||.||||||.|.||||||.|..|.||||||||
BPUM_1538___f 1 ATGTCAGCAAGAGATTTATCTGTTTTATTCAGTGTTATTTTAATTGTGGC 50
BSNT_02672___ 51 GATGCTGGTGATTCCATTTCCTCCATGGCTGTTAAGTATTTTGATCATTA 100
|||||||||.||.||.|||||.|||..|||.|||||||||||.|||||||
BPUM_1538___f 51 GATGCTGGTCATACCGTTTCCGCCAATGCTATTAAGTATTTTAATCATTA 100
BSNT_02672___ 101 TTAATATTTCTCTTGCGTTGATCGTGCTTCTCACCACAATGAATATGCAG 150
|||||||||||||||||.|.|||||||||||||||||||||||.|||||.
BPUM_1538___f 101 TTAATATTTCTCTTGCGCTTATCGTGCTTCTCACCACAATGAACATGCAA 150
BSNT_02672___ 151 GAAGCGCTTCAGTTTTCGATTTTTCCGTCACTGTTGCTGCTTTTGACCCT 200
|||.|.||.||.|||||.||.|||||.|||.||.|..||||.||.||.||
BPUM_1538___f 151 GAACCACTGCAATTTTCAATATTTCCATCATTGCTTTTGCTCTTAACGCT 200
BSNT_02672___ 201 ATTTCG-TTTGGGCTTGAACGTCTCAACTACCCGTTCAATTCTTTCACAC 249
.||||| ||.|||||| |||.||||.||.||.||.||.||||||||| ||
BPUM_1538___f 201 CTTTCGCTTAGGGCTT-AACATCTCTACAACACGATCTATTCTTTCA-AC 248
BSNT_02672___ 250 -GGTGAAGGAGGGAAAGTCGTCGAGACTTTCGGAAATTTC----GTTGTC 294
||.||.|.|||.||.||.||.||.||.||.|| ||| |||||.
BPUM_1538___f 249 TGGAGACGCAGGAAAGGTTGTAGAAACGTTTGG----TTCATTTGTTGTT 294
BSNT_02672___ 295 GGCGGAAATGTATTAGTTGGACTCGTTGTATTTATCATCCTTATTATTAT 344
||.|||||||||.|.|||||.||.||.||.||..|.||.||.||.||.||
BPUM_1538___f 295 GGAGGAAATGTACTCGTTGGTCTTGTGGTCTTCCTTATTCTGATCATCAT 344
BSNT_02672___ 345 TCAGTTTATCGTCATTACAAAAGGTGCTGAACGTGTTTCCGAGGTTGCAG 394
|||.|||.|.||||||||.|||||.|||||.||||||||.||||||||.|
BPUM_1538___f 345 TCAATTTGTTGTCATTACCAAAGGGGCTGAGCGTGTTTCAGAGGTTGCGG 394
BSNT_02672___ 395 CAAGGTTTACGCTGGACGCAATGCCGGGGAAGCAGATGAGTATTGATGCT 444
||||.|||||.||.||.||.|||||.|||||.||.||||||||||||||.
BPUM_1538___f 395 CAAGATTTACCCTCGATGCGATGCCAGGGAAACAAATGAGTATTGATGCA 444
BSNT_02672___ 445 GATTTAAACGCAGGGATGATTACCGAACAG-GAAGC--GAAGCATCGCCG 491
||||||||.||.||||||.|.||.||| || ||||| ||| |||||||
BPUM_1538___f 445 GATTTAAATGCTGGGATGCTGACAGAA-AGTGAAGCAAGAA--ATCGCCG 491
BSNT_02672___ 492 CGAAAAAGTGGCAAGAGAAGCAGACTTTTATGGAGCAATGGACGGTGCCA 541
.||||||||.||.||||||||||||||||||||.||.|||||.||.||.|
BPUM_1538___f 492 TGAAAAAGTAGCGAGAGAAGCAGACTTTTATGGTGCGATGGATGGAGCAA 541
BSNT_02672___ 542 GTAAATTTGTAAAAGGTGACGCCATTGCCGGAATCATCATTGTGATGATC 591
||||.||.||.|||||.||.|||||.||.||.||.|||||.||.||.||.
BPUM_1538___f 542 GTAAGTTCGTCAAAGGGGATGCCATCGCAGGTATTATCATCGTCATTATT 591
BSNT_02672___ 592 AATATTATTTTCGGAATCGTGATCGGAATGCTTCAGCAGGGCATGTCCAT 641
|||||||||||.||.||..|.||.||.|||||||||||.||.|||||.||
BPUM_1538___f 592 AATATTATTTTTGGGATTATCATTGGGATGCTTCAGCAAGGAATGTCAAT 641
BSNT_02672___ 642 TCAAGAGGCTGCTTCACACTTTACGATGCTGACTGTAGGGGATGGAATTG 691
||||||..|.|||||.||||||||..|..|.||.|||||.||.||.||||
BPUM_1538___f 642 TCAAGAATCAGCTTCCCACTTTACATTATTAACGGTAGGAGACGGGATTG 691
BSNT_02672___ 692 TTTCGCAAATCCCGGCACTGTTAATTTCTACGGCTACGGGTATTGTGGTC 741
||||.||||||||.|||||..|.|||||.||.||.||.||.|||||.|||
BPUM_1538___f 692 TTTCACAAATCCCTGCACTTCTCATTTCAACAGCGACAGGAATTGTCGTC 741
BSNT_02672___ 742 ACAAGAGCTGCATCTGAA--GGAAACTTAGGGCATGACATTACAGGCCAG 789
|||||.|||||.||| || ||||.|||.||.|| ||.||.||.|..|||
BPUM_1538___f 742 ACAAGGGCTGCTTCT-AATGGGAACCTTGGGTCA-GATATCACTGAACAG 789
BSNT_02672___ 790 CTGTTTGCGTATCCA---AAGCTTTTATACGTCGCAGCAGCTACGATCAT 836
||||||||.|.|||| |.|||| ||||||.|.||||.|||||||.|
BPUM_1538___f 790 CTGTTTGCATTTCCAGCTATGCTT---TACGTCACGGCAGGTACGATCTT 836
BSNT_02672___ 837 GCTT-TTAGGTATTTTCACTCCGATCGGCATCCTTCTGACGGGGCCGCTT 885
.||| ||.||| |.||.||.||.||||||.|.|||.||||.||.|||.|.
BPUM_1538___f 837 CCTTCTTGGGT-TGTTTACACCAATCGGCGTACTTTTGACAGGACCGATC 885
BSNT_02672___ 886 GCGGGATTGCTTGCTTTTGGCGCATATACACTATCT--ATATCAGGTA-- 931
||.||.||.|||||..|.|||||||| || ||.|||...|
BPUM_1538___f 886 GCAGGTTTACTTGCCCTCGGCGCATA--------CTTGATGTCAAAAAAC 927
BSNT_02672___ 932 ----AGGAAAAAGAAGAAGTGGATGAGATTCTTGAGGAAGAGGCTGAGGT 977
||||..||||||||.|.||.|||.|.||.|||||..||||.|||||
BPUM_1538___f 928 AAACAGGATCAAGAAGAAATAGAAGAGGTACTAGAGGAGCAGGCAGAGGT 977
BSNT_02672___ 978 GGACGAGCTTAAAAGCCCTGAAAGTGTCGTTCAGCTTCTGCATATAGATC 1027
.||.|||.|.|||||.||.|||||||||.||||.|||||.||.||.|||.
BPUM_1538___f 978 AGAAGAGATGAAAAGTCCAGAAAGTGTCATTCACCTTCTCCAAATGGATG 1027
BSNT_02672___ 1028 CGATAGAATTTGAGTTTGGATATGGCCTGATACCGCTTGCTGATGCCAAT 1077
|.||.||||||||||||||.|||||||||||.|||||.||.|||||.|||
BPUM_1538___f 1028 CCATTGAATTTGAGTTTGGCTATGGCCTGATTCCGCTAGCCGATGCAAAT 1077
BSNT_02672___ 1078 CAAGGCGGTGATTTATTAGACCGAATTGTTATGATACGCCGTCAG-TTGG 1126
|||||||||||..|.||||||||.|||||.|||||.||..|.||| |||.
BPUM_1538___f 1078 CAAGGCGGTGACCTGTTAGACCGGATTGTGATGATTCGAAGGCAGCTTGC 1127
BSNT_02672___ 1127 CTTTGGAACTCGGGCTTGTCATTCCTGTCGTGCGAATCAGAGATAATATA 1176
|.|| |||||.||.|||||.|||||.||.||.||.|||.|.|||||.||.
BPUM_1538___f 1128 CCTT-GAACTTGGTCTTGTGATTCCAGTTGTCCGGATCCGGGATAACATT 1176
BSNT_02672___ 1177 GCGTTGCAGCCTAATGAATACCGATTGAAAATTAAAGGAAACGAAGTAGC 1226
||..|..|.||.|||||.||.|||.|.|||||.|||||.||.|||||.||
BPUM_1538___f 1177 GCACTTAACCCAAATGAGTATCGACTCAAAATAAAAGGGAATGAAGTGGC 1226
BSNT_02672___ 1227 AAAAGGCGAGCTGTTGCTTGATCATTATTTAGCGATGTCGCCTACTCCTG 1276
||||||||||||..||||||||||.||.|||||||||||||||||.||||
BPUM_1538___f 1227 AAAAGGCGAGCTACTGCTTGATCACTACTTAGCGATGTCGCCTACACCTG 1276
BSNT_02672___ 1277 AGGACGATCTCATTGAAGGGATTGAAACAGTGGAGCCTTCATTCGGTCTG 1326
|.||.||||..||||||||.|||||||||.|.|||||.||.||.|||||.
BPUM_1538___f 1277 ATGATGATCCGATTGAAGGAATTGAAACAATCGAGCCATCCTTTGGTCTT 1326
BSNT_02672___ 1327 CCGGCTAAATGGATTAGCGAAGCGGTAAAGGATGAAGCCGACATGCTTGG 1376
||||||||||||||....|||||.|.|||.|||.|.||.||.||||||||
BPUM_1538___f 1327 CCGGCTAAATGGATCTCAGAAGCAGAAAAAGATCAGGCTGAGATGCTTGG 1376
BSNT_02672___ 1377 TTATACAGTAGTTGATCCTGCATCAGTCGTTTCAACGCATATTACGGAGA 1426
.|||||.|||||.||||||||||||||.||.||.||.||.||.||.||.|
BPUM_1538___f 1377 CTATACGGTAGTAGATCCTGCATCAGTTGTGTCTACTCACATCACAGAAA 1426
BSNT_02672___ 1427 AAATTAAGCAGCATGCCCACGAATTGATCGGAAGGCAGGAGACAAAACAG 1476
||||||..||..|..|.||||||.||.|||||.|.||.||.||.||.||.
BPUM_1538___f 1427 AAATTAGACAAAACACACACGAACTGCTCGGACGCCAAGAAACGAAGCAA 1476
BSNT_02672___ 1477 CTGATCGATCACTTGAAAGAATCGTATCCAGTCCTGGTTGAAGAGGTTAC 1526
.|.||||||||..||||||||...|||||.|||.|.||.||.|||||.||
BPUM_1538___f 1477 TTAATCGATCATCTGAAAGAAAGTTATCCTGTCTTAGTGGATGAGGTGAC 1526
BSNT_02672___ 1527 GCCGAATCCATTGTCTGTCGGTGATATTCAGAAAGTGCTTGCTAAGCTTT 1576
|||.||||||.|..|.||.|||||||||||.|||||||||||.||.||..
BPUM_1538___f 1527 GCCAAATCCACTAGCAGTTGGTGATATTCAAAAAGTGCTTGCAAAACTGC 1576
BSNT_02672___ 1577 TAAAAGAAAAAGTTTCAATTCGAAA-CTTAGTAACGATTTTTGAAACGCT 1625
|.||||||||.|||||.|||||||| ||| ||.||.||||||||.|||||
BPUM_1538___f 1577 TGAAAGAAAAGGTTTCTATTCGAAATCTT-GTCACCATTTTTGAGACGCT 1625
BSNT_02672___ 1626 TGCTGACTATGGGAAATTAACAACAGATTCTGATCTTTTGACAGAGTATA 1675
|||.|||||.||.||.|||||.||.|||.|.|||.|.||.|||||||||.
BPUM_1538___f 1626 TGCAGACTACGGAAAGTTAACGACGGATACAGATTTGTTAACAGAGTATG 1675
BSNT_02672___ 1676 CAAGACAAGCGCTTGCTAAACAAATTACAGCACAGTTTGCCAAAGAAAAT 1725
..|||||.|||||.||.|.|||.|||||.|||||.|.|||.|.|||.|||
BPUM_1538___f 1676 TCAGACAGGCGCTCGCAAGACAGATTACCGCACAATATGCGAGAGAGAAT 1725
BSNT_02672___ 1726 GAAGTGTTGAAGGTTGTTACTTGTTCGGGCCGTGTAGAAAAGGCAATAGC 1775
|||....|.||.||.||.||.||.||||||||.||.|||||||..||.||
BPUM_1538___f 1726 GAATCACTCAAAGTCGTGACATGCTCGGGCCGAGTGGAAAAGGTGATTGC 1775
BSNT_02672___ 1776 AGACGGTGTGCAGCAGACGGAACACGGGAACTATTTATCACTTGAACCAG 1825
.|||.|.||.|||||.||.||.||.||||||||.|||||..|.||.||||
BPUM_1538___f 1776 TGACAGCGTACAGCAAACAGAGCATGGGAACTACTTATCGTTAGATCCAG 1825
BSNT_02672___ 1826 ATAT-TTCAGAAAGTATAGTGCGCTCTGTCGCTAAAGAAGCTGAACAGCT 1874
| || .||.||||||.|..|.|..||.||.||.|.||||..|||||||||
BPUM_1538___f 1826 A-ATCCTCTGAAAGTGTGATTCAATCAGTGGCGAGAGAAATTGAACAGCT 1874
BSNT_02672___ 1875 CTCATTACGTCAGGAAACCGCGATTCTTCTTTGCTCGCCGCCTGTCAGAA 1924
.||..|.|||||||||||..||.||||..|.|||||.||.|||.|.||||
BPUM_1538___f 1875 TTCGCTTCGTCAGGAAACGCCGGTTCTATTGTGCTCACCTCCTATAAGAA 1924
BSNT_02672___ 1925 TGTATGTGAAGCAGCTTCTGGAACGGTACTTCCCTGATCTTCCGGTACTC 1974
||||.||.||||||||..|.|||.|.||.|||||.||..|.||||||||.
BPUM_1538___f 1925 TGTACGTCAAGCAGCTGTTAGAAAGATATTTCCCGGAATTACCGGTACTA 1974
BSNT_02672___ 1975 TCTTATAACGAACTTGAGGCGAATGTTGAGGTACAAAGCATTGGAGTGGT 2024
||||||||||||||.||.||.|||||.||.|||||.|||||.||||||||
BPUM_1538___f 1975 TCTTATAACGAACTAGAAGCAAATGTGGAAGTACAGAGCATCGGAGTGGT 2024
BSNT_02672___ 2025 GGATATTTAA 2034
||||||.|||
BPUM_1538___f 2025 GGATATCTAA 2034
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