Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02671 and BPUM_1537
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02671___flhB.1.24716.seq
# -bsequence dna-align/BPUM_1537___flhB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02671___flhB-BPUM_1537___flhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02671___flhB-BPUM_1537___flhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02671___flhB
# 2: BPUM_1537___flhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity: 791/1142 (69.3%)
# Similarity: 791/1142 (69.3%)
# Gaps: 112/1142 ( 9.8%)
# Score: 2678.5
#
#
#=======================================
BSNT_02671___ 1 ---ATG---AAGCTTAGAGTTGACCTGCAGTTTTTTGCGGGAGAGAAGAC 44
||| |.|||||||.|.|||.||||.|||||.||.||.||.||.||
BPUM_1537___f 1 ATGATGACAAGGCTTAGACTAGACTTGCAATTTTTCGCAGGTGAAAAAAC 50
BSNT_02671___ 45 AGAAAAAGCAACTCCGAAAAAACGGAAGGATACGCGAAAAAAAGGGCAGG 94
||||||||||||.||||||||..||.|.|||.|.||.||||||||.||||
BPUM_1537___f 51 AGAAAAAGCAACGCCGAAAAAGAGGCAAGATTCACGTAAAAAAGGTCAGG 100
BSNT_02671___ 95 TAGCCAAAAGCTCGGATGTCAATACCGCCGTTTCTTTACTGGTAAT---- 140
|.||||||||..|.||.||||||||.|||.|.||.||.||..||||
BPUM_1537___f 101 TTGCCAAAAGTACCGACGTCAATACAGCCATCTCATTTCTATTAATCTTT 150
BSNT_02671___ 141 -----ATTCCTTTCGCTTATTGCAATTGGTCCGTATATGAGAGACAGGC- 184
||||.||| || |||||.||.|.|||||.||| ||
BPUM_1537___f 151 TTATCATTCTTTT------TT---ATTGGGCCTTTTATGAAAGA---GCG 188
BSNT_02671___ 185 ------TGCTGTCATTCATAGAAACATTTTAT-----ACCGAATCGCTCA 223
|||..||||| |||...|||||| |.||| .|||
BPUM_1537___f 189 TATTATTGCGCTCATT----GAACGTTTTTATTCAACAACGA--TGCT-- 230
BSNT_02671___ 224 CAATGA-----AGCTCTCAGAATCAAATGTGCATACATTGTTTGT----C 264
||||| |||.| |||.|||.|.|||..|.|.||||| .
BPUM_1537___f 231 -AATGAAAGTTAGCAC-----ATCTAATATTCATCAACTATTTGTGGAAT 274
BSNT_02671___ 265 AGCTTATTAAAGGATATGGG---------CAT---AATACTCGCACCGAT 302
.|||| .||||.|..|| ||| ||||||.|
BPUM_1537___f 275 TGCTT----CAGGAAACAGGGCTCCTCCTCATGCCAATACTTG------- 313
BSNT_02671___ 303 TTTGCTTGTTGCTCTTGTTGCAGGAGTCGTAAGCAACTATATGCAGGTTG 352
.|||||.|.|..|.|||||..|..|.||.||||||.||||.||||
BPUM_1537___f 314 -----GTGTTGGTATGCTGGCAGGGATTATCAGTAACTATTTGCAAGTTG 358
BSNT_02671___ 353 GGTTCTTATTTTCTGCTGAAGTGATACAGCCTAAGCTTGAAAAACTGGAT 402
|.||..|.|||||..|.|||||.||..|.||.||..|.||||||||.|||
BPUM_1537___f 359 GCTTTCTCTTTTCGACAGAAGTAATCAAACCAAAATTAGAAAAACTCGAT 408
BSNT_02671___ 403 CCGATCAAAGGCTTTAAACGAATATACAGTATGAGGGCGATTGTAGAGCT 452
||.||||||||.||||||||||||||||||||..|.||..|.|||||.||
BPUM_1537___f 409 CCAATCAAAGGGTTTAAACGAATATACAGTATTCGAGCCCTCGTAGAACT 458
BSNT_02671___ 453 GATT-AAATCAATTTTGAAAATCGTAGTCGTCGGTTTTGCGGCTTTTGCT 501
||| |||||.|||||.|||||.|...|..|.|||||||||.|.|||..|
BPUM_1537___f 459 -ATTAAAATCCATTTTAAAAATTGGTTTAATTGGTTTTGCGACATTTATT 507
BSNT_02671___ 502 GTGCTTTGGCTGCATTATGGAGAAATTCTCCGGCTTCCTCTCCTGACACC 551
|..||||||.||||.|.||..|||||.||..||||||||.|.||.|||.|
BPUM_1537___f 508 GCACTTTGGATGCACTTTGACGAAATCCTAAGGCTTCCTTTACTAACAGC 557
BSNT_02671___ 552 CGAAGAGGCACTATC-TTTCGTTTCAAAACTCACTTTGTGGATGGGACTA 600
.||.||..|.|| || ||||||..|||...|.||.|||...|||||.|||
BPUM_1537___f 558 AGAGGAAACTCT-TCATTTCGTGGCAAGTATGACCTTGATTATGGGGCTA 606
BSNT_02671___ 601 AGCGGTGCAGGCGCTTTATTAAT--TCTT-GCTGGTCTTGACTATTTATA 647
...|..|||||.||| .|.|| |||| ||.||.|||||.|||.|.||
BPUM_1537___f 607 TATGCAGCAGGTGCT---CTCATGGTCTTAGCAGGGCTTGATTATATGTA 653
BSNT_02671___ 648 TCAGAGATTTGATTATGAGAAAAACATCAAAATGTCAAAACAAGATATAA 697
|||||.||||||||||||.||||||.|....|||||.||||||||.||.|
BPUM_1537___f 654 TCAGAAATTTGATTATGAAAAAAACTTACGGATGTCCAAACAAGACATCA 703
BSNT_02671___ 698 AAGACGAGTACAAAAAATCTGAAGGTGACCCGATTATTAAGTCTAAAATT 747
||||.|||||.||||||||.||.|||||||||.|.||.||.||.||.|||
BPUM_1537___f 704 AAGATGAGTATAAAAAATCAGAGGGTGACCCGCTCATAAAATCAAAGATT 753
BSNT_02671___ 748 AAACAAAGACAGCGGGAAATGGCGATGAGGCGGATGATGCAGGAAGTTCC 797
|||||..|.||||||||||||||.|||||.|||||||||||||||||.||
BPUM_1537___f 754 AAACAGCGTCAGCGGGAAATGGCCATGAGACGGATGATGCAGGAAGTCCC 803
BSNT_02671___ 798 AAAAGCAGATGTCATTATCACAAACCCGACTCACTATGCGATTGCTTTGA 847
||||||.||.|||||.||.||||||||.||.||.|||||.||||||.|||
BPUM_1537___f 804 AAAAGCGGACGTCATCATTACAAACCCAACCCATTATGCCATTGCTCTGA 853
BSNT_02671___ 848 AATATGATGAAGAAAAAATGGACGCTCCTTATATTGTTGCAAAAGGTGTC 897
|||||||.||||||||.||||||||.||.|.|.||||.|||||.|
BPUM_1537___f 854 AATATGACGAAGAAAAGATGGACGCGCCCTTTGTTGTGGCAAAGG----- 898
BSNT_02671___ 898 GACCA-----CCTTGCGTTAAAAATCAGGAAAATTGCTAAAGAGCATGAT 942
||.|| ..|.||.||.|||||.||.|..|||||.||||||||.|||
BPUM_1537___f 899 GAACAGATATTTTGGCTTTGAAAATTAGAACGATTGCGAAAGAGCACGAT 948
BSNT_02671___ 943 GTCATGATGGTAGAAAACAGACCGCTTGCCCGTGCGTTATATGATCAGGT 992
.|.||||..|||||||||.|.|||||.||.|||||..|.|||||||||||
BPUM_1537___f 949 ATTATGACCGTAGAAAACCGGCCGCTCGCTCGTGCACTCTATGATCAGGT 998
BSNT_02671___ 993 GGAAATTGACCAGGCAGTGCCGGAAGAATTTTTTAAAGTTTTAGCAGAAA 1042
.||.||||||||.||.|||||.||.||||..|||||.|...|.|||||||
BPUM_1537___f 999 CGACATTGACCAAGCGGTGCCAGAGGAATACTTTAAGGCAATCGCAGAAA 1048
BSNT_02671___ 1043 TTCTGGCTTACGTATATAAAACAAAACAAAA-AGTATATTGA 1083
||.|.|||||.||.||||||||.|||||||| |.|.|| |||
BPUM_1537___f 1049 TTTTAGCTTATGTTTATAAAACGAAACAAAAGATTTTA-TGA 1089
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