Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02665 and BPUM_1533
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02665___fliZ.1.24716.seq
# -bsequence dna-align/BPUM_1533___fliZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02665___fliZ-BPUM_1533___fliZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02665___fliZ-BPUM_1533___fliZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02665___fliZ
# 2: BPUM_1533___fliZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 734
# Identity: 430/734 (58.6%)
# Similarity: 430/734 (58.6%)
# Gaps: 148/734 (20.2%)
# Score: 1176.5
#
#
#=======================================
BSNT_02665___ 1 TTGAAAAAGAG-TCAATATTTTATCGTTTTTATTTGTTTTTTCGTTTTAT 49
||||||||..| |..||| |.|||.|...|.||..|||||.|..||||.|
BPUM_1533___f 1 TTGAAAAAACGTTTGATA-TGTATAGCAATGATCAGTTTTATGCTTTTCT 49
BSNT_02665___ 50 TCAGTGTACATCCGATTGC----------------TGCTGCCGCGGCAGA 83
|.| ||| ||| |||||...|...|||
BPUM_1533___f 50 TGA---------CGA-TGCAACCCGCCTCACTGTTTGCTGAAACAAAAGA 89
BSNT_02665___ 84 CTCTGATAATTCAACTGTAAACGAATGGTTTCAAAAGAAAGATGAAAAAA 133
..||||.|||...||.||.||.||.||| |..|||||.||.||||
BPUM_1533___f 90 TCCTGAAAATGGCACAGTGAATGACTGG------ATCAAAGAAGAGAAAA 133
BSNT_02665___ 134 CTGCAGATCAATCAGAGCAAAAG---AAAGAAAAAACAACAAAAACTGCT 180
|||| || ||||| |.||||||.||||| .||||..
BPUM_1533___f 134 --GCAG------CA----AAAAGGATACAGAAAAGACAAC---CACTGAC 168
BSNT_02665___ 181 GATGAGACGGA---GGGAGCGG-------CTGCTCCTTCTGTCTCAGCTT 220
.||.|.|||.| ||.||..| || ||.||||||||||...|.
BPUM_1533___f 169 AATCAAACGAATCCGGCAGAAGAAGTTCCCT-CTTCTTCTGTCTCCATTA 217
BSNT_02665___ 221 TTGATTTTGTAAAGATGATTTTCGCTTTACTGTTTGTTATCGCGCTGATT 270
|.||||||||.||.||||||...||||||||.|||||.|||..|||.||.
BPUM_1533___f 218 TGGATTTTGTCAAAATGATTGGTGCTTTACTTTTTGTCATCCTGCTTATA 267
BSNT_02665___ 271 TACGGGCTGGT------------TAAGCTCATGAACAAAAGAAATCGGCT 308
||.||..|||| ||||| |||.|.|||
BPUM_1533___f 268 TATGGATTGGTGAGATTTGTTGGTAAGC-------------AAAACCGCT 304
BSNT_02665___ 309 --CCTAAAGCCTTTTCAATATGTTGAAAATATTGGCGGCACATCGGTCGG 356
|.|||| ||.||||..|||||||||||||||||.||.||..||||.||
BPUM_1533___f 305 TACTTAAA-CCATTTCGCTATGTTGAAAATATTGGTGGAACGACGGTAGG 353
BSNT_02665___ 357 CCAGAACAGATCCATACAATTGATCAAGGTCGGGAAAAGTGTGCTCGTCG 406
|||.|||.|.||..|.||..|.|||||.||.||.|||.|.||..|.||.|
BPUM_1533___f 354 CCAAAACCGTTCAGTCCAGCTTATCAAAGTGGGCAAACGAGTATTAGTTG 403
BSNT_02665___ 407 TCGGTGTAGGAGAGACGATCCAGCTGCTGAAAGAAATTGAGGATGAAAAA 456
||||.||||..||..|||||||||||||.|||||||||||.||||||.||
BPUM_1533___f 404 TCGGAGTAGCGGACTCGATCCAGCTGCTAAAAGAAATTGATGATGAACAA 453
BSNT_02665___ 457 GAGAT-TGAAGTCATTCTCAGTCAGCATGAAGAGGCAATGTCAAGCAAAA 505
|| || |||||..||..||...||..|.|||||.||.|||..|||.||||
BPUM_1533___f 454 GA-ATGTGAAGCGATCGTCCAACAATACGAAGAAGCGATGGAAAGTAAAA 502
BSNT_02665___ 506 TAGA-GTGGCAAAAGTTTGTGAAGCCGCTTAAGAGTTCTGAACATC---- 550
.||| .|..|||||.| ||.|.||.|.||| |||||
BPUM_1533___f 503 CAGATTTACCAAAAAT---------CGTTCAAAAATTC---ACATCTCAG 540
BSNT_02665___ 551 ----------AGCCGCAG-CAAAAACTGCCTTCATTTTCAAAAGCATTAA 589
||...||| |||..||| .||||.||||| |||
BPUM_1533___f 541 ATAAAGAAAAAGGATCAGCCAACCACT-TCTTCTTTTTC---AGC----- 581
BSNT_02665___ 590 AAGAGCAACTTGAA-------------GAGTTAAAACAAAACCGTTCTGA 626
|||.||||| ||.||.|||.|.|.||..||.||
BPUM_1533___f 582 -----CAATTTGAAGGCACAGCTAGCCGAATTGAAAAAGACCCAATCAGA 626
BSNT_02665___ 627 AGGAAAGAAGAAAGGCCCACGTCATCATGAATGA 660
||..|..|||||||||||....||..||||||||
BPUM_1533___f 627 AGTCAGAAAGAAAGGCCCGAAACAAAATGAATGA 660
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