Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02663 and BPUM_1531
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:16
# Commandline: needle
# -asequence dna-align/BSNT_02663___fliY.1.24716.seq
# -bsequence dna-align/BPUM_1531___fliY.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02663___fliY-BPUM_1531___fliY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02663___fliY-BPUM_1531___fliY.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02663___fliY
# 2: BPUM_1531___fliY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1178
# Identity: 848/1178 (72.0%)
# Similarity: 848/1178 (72.0%)
# Gaps: 94/1178 ( 8.0%)
# Score: 2983.0
#
#
#=======================================
BSNT_02663___ 1 ATGGAGAATAA------TAGATTATCTCAAGATGAGATTGACGCGCTTCT 44
||||||||||| ||.||||||.|||||.||.||.||.|||||.||
BPUM_1531___f 1 ATGGAGAATAACGGAAGTAAATTATCACAAGACGAAATCGATGCGCTCCT 50
BSNT_02663___ 45 TAACGGTACTGGCAGCACGCTTGATGAGCCAGAGGTTCCGGAAGTAGATG 94
|||.|| .||.|||| .|||.||...|||| ||.|| ||.| |
BPUM_1531___f 51 TAAAGG---AGGTAGCA---ATGACGATATAGAG---CCTGA--TACA-G 88
BSNT_02663___ 95 ACTTATCGGAAATGGAGCGTGATGCGATCGGTGAAATCGGTAATATTTCA 144
.|.||||.|.||||||.|..|||||.||.||.||||||||.|||||||||
BPUM_1531___f 89 TCCTATCTGCAATGGAACAAGATGCCATTGGAGAAATCGGGAATATTTCA 138
BSNT_02663___ 145 TTCGGCAGTTCTGCGACAGCACTGTCAACGCTTTTAAATCAAAAGGTCGA 194
||||||||.|||||.||||||||.|||||.||.|||||||||||.||.||
BPUM_1531___f 139 TTCGGCAGCTCTGCTACAGCACTTTCAACCCTATTAAATCAAAAAGTGGA 188
BSNT_02663___ 195 TATTACGACTCCAAGCGTAACGGTCATTCCAAGAAGTA----AAATCAGC 240
.|||||.||.||||..||.||.||.||||.||.||||| .|||
BPUM_1531___f 189 GATTACCACCCCAACTGTTACAGTGATTCAAAAAAGTATGCTGAAT---- 234
BSNT_02663___ 241 GATGCATTTCCTGAACCGTATGTAGCGATTGAAGTGAATTATACGGAGGG 290
||.|.|||||||.|.||||||||.|||||||||||||||||||||||.||
BPUM_1531___f 235 GAGGAATTTCCTCATCCGTATGTCGCGATTGAAGTGAATTATACGGAAGG 284
BSNT_02663___ 291 CTTCAGCGGAAGCAACCTGTTAGTCGTGGAACAAAGTGACGCGGCGATCA 340
||||||||.|||.||||||.|.|||||..|.||||..||.||.||..|||
BPUM_1531___f 285 CTTCAGCGCAAGTAACCTGCTTGTCGTCCAGCAAACAGATGCAGCAGTCA 334
BSNT_02663___ 341 TTGCTGACTTAATGATCGGGGGAGACGGAAAAGGTGCGGACCCTTCACTG 390
||||.|||||||||||.||.||||||||.|.|..|||.||||||||..|.
BPUM_1531___f 335 TTGCGGACTTAATGATGGGCGGAGACGGGACAAATGCTGACCCTTCTTTA 384
BSNT_02663___ 391 GGTGAAATCCATTTAAGTGCGGTTCAAGAAGCAATGAACCAAATGATGGG 440
.|.|||||.||.||||||||.||.||||||||.|||||||||||||||||
BPUM_1531___f 385 AGCGAAATTCACTTAAGTGCAGTACAAGAAGCGATGAACCAAATGATGGG 434
BSNT_02663___ 441 ATCGGCTGCCACATCAATGTCTACTGTATTCAGTAAAAAAATTGATATTT 490
|||.|||||.|||||.|||||.||.||.||.|.||||||.||||||||||
BPUM_1531___f 435 ATCTGCTGCGACATCCATGTCGACGGTCTTTAATAAAAAGATTGATATTT 484
BSNT_02663___ 491 CACCTCCTCGGGTTGAATTGTTGGATGTTACTGAAGAAAAGGGTACAGAC 540
|.||.|||||.||.|||||..|.|||||.|..||||.|.|.||.||||||
BPUM_1531___f 485 CTCCGCCTCGCGTCGAATTACTTGATGTGAAAGAAGGAGAAGGAACAGAC 534
BSNT_02663___ 541 CGTATTCCTGATGATGAAATGCTGGTGAAAGTTTCTTTCAACTTAAAGGT 590
||.||.||.|.||..||||||||.||.|||||.||.||||..|||||..|
BPUM_1531___f 535 CGGATCCCAGCTGCAGAAATGCTTGTCAAAGTATCCTTCAGATTAAAAAT 584
BSNT_02663___ 591 GGGAGAATTAATAGACTCCAGCATTATGCAGCTTTA-CCCATTGACATTT 639
.||.|||.|.||.||.||.|..||.||||||||||| ||.||| ||||||
BPUM_1531___f 585 AGGTGAACTCATTGATTCAAATATCATGCAGCTTTATCCTATT-ACATTT 633
BSNT_02663___ 640 GCGAAAGATTTAATTTCAAGCCTTATGAACT--CAGAAAGTGCAGAGGAA 687
|||||||||||||||.|| |||.| ||||...|||..|.||.
BPUM_1531___f 634 GCGAAAGATTTAATTGCA--------GAATTAACAGACCCTGCGCAAGAG 675
BSNT_02663___ 688 GAAGAAACGGT----GCAGCCCGAAGT---TACATACGAACAGCCGAAAG 730
|||||..|||| |.|||.| |||| ||||...||||..|...|||
BPUM_1531___f 676 GAAGAGCCGGTTCAAGAAGCTC-AAGTGAGTACACCTGAACCTCAACAAG 724
BSNT_02663___ 731 AGCCTGTGACGCCAGAGCCGCGTATTGAACCGAA----GCAACAGC---- 772
|||..|||| ||.||.| |||.||||
BPUM_1531___f 725 ------------CAGCTCCGC------AAACGCAATCTGCACCAGCGCAG 756
BSNT_02663___ 773 --AGCAG--CCGCCAAAAAGGCAGG-GAACAG-CAAAAAAAGCAGCGCCA 816
||||| |||||||||||.|||| || || |||||...|||||.||.
BPUM_1531___f 757 CAAGCAGCTCCGCCAAAAAGACAGGCGA--AGCCAAAACCGGCAGCACCT 804
BSNT_02663___ 817 GTTCAGGTTTCACCGGTGGAATTTTCCGCGTT---TGATCCAAACGAAGC 863
||..|.||..||||.||.||||||...||.|| |||.| |..|||
BPUM_1531___f 805 GTAAATGTGGCACCAGTTGAATTTGAAGCATTCAGTGAGC----CTCAGC 850
BSNT_02663___ 864 --TGTACAAGCCCCTA--TTCATAATCTGGATATGCTTTTGGATATCCCG 909
|..||||||| | ||...|||||.||||||||..|||||||.|||
BPUM_1531___f 851 ATTCAACAAGCC---AGCTTGGAAATCTTGATATGCTGATGGATATTCCG 897
BSNT_02663___ 910 CTTTCGATTACTGTTGAGCTTGGCAGAACGAAGAGAAGCGTAAAAGAGAT 959
|||||.|||||.||.||.|||||.|||||..||.||||.||.|||||..|
BPUM_1531___f 898 CTTTCCATTACGGTGGAACTTGGAAGAACTCAGCGAAGTGTCAAAGAAGT 947
BSNT_02663___ 960 TTTAGAGCTTTCTGCCGGAAGTATTATCGAGCTTGATAAATTAGCTGGTG 1009
..|.||||||||.||.||||||||.||.||.||.||.|||.|.|||||||
BPUM_1531___f 948 CCTTGAGCTTTCAGCAGGAAGTATCATTGAACTGGACAAACTTGCTGGTG 997
BSNT_02663___ 1010 AGCCTGTAGATATTTTAGTTAATCAGCGTATCGTTGCCAAAGGCGAGGTC 1059
||||.|||||.|||.|||||||..||||.|||||.||||||||.||.|||
BPUM_1531___f 998 AGCCAGTAGACATTCTAGTTAACAAGCGAATCGTCGCCAAAGGGGAAGTC 1047
BSNT_02663___ 1060 GTTGTCATTGAAGAAAACTTCGGAGTAAGAGTCACTGACATTTTAAGCCA 1109
|||||||||||.||.|||||.||.||..|.||.|||||.||||||||.||
BPUM_1531___f 1048 GTTGTCATTGATGAGAACTTTGGTGTTCGTGTGACTGATATTTTAAGTCA 1097
BSNT_02663___ 1110 GGCAGAGCGCATTAATAATTTAAAATAA 1137
|.||||..|..||..|||||||||||||
BPUM_1531___f 1098 GTCAGAAAGACTTTCTAATTTAAAATAA 1125
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