Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02657 and BPUM_1528

See Amino acid alignment / Visit BSNT_02657 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_02657.1.24716.seq
#    -bsequence dna-align/BPUM_1528.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02657-BPUM_1528.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02657-BPUM_1528.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02657
# 2: BPUM_1528
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 223
# Identity:     160/223 (71.7%)
# Similarity:   160/223 (71.7%)
# Gaps:          14/223 ( 6.3%)
# Score: 540.0
# 
#
#=======================================

BSNT_02657         1 ATGATTAAAGTAACCCGTTTGAACGG----GCAGCCCTTTACACTGAATG     46
                     ||||||.|||||||..|.|||||.||    |.|    ||||..|||||.|
BPUM_1528          1 ATGATTGAAGTAACAAGATTGAATGGCAAAGGA----TTTATGCTGAACG     46

BSNT_02657        47 CGCTATTTATTGAACAGATTGAATGTTTTCCGGATACTACAATTACTCTG     96
                     |.||...|||.||.||.||.|||.|.|||||.||.||.||.|||||..|.
BPUM_1528         47 CTCTCCATATCGAGCAAATCGAAAGCTTTCCAGACACGACCATTACATTA     96

BSNT_02657        97 TCAAATGGTAAGAAGTTTGTAGTAAAAGAAGATGAAGA--AGCTGTTCTG    144
                     .|.|||||.|||||.||.|||||.||||||.|||||||  |||  |||..
BPUM_1528         97 GCCAATGGAAAGAAATTCGTAGTGAAAGAAAATGAAGATCAGC--TTCAA    144

BSNT_02657       145 GAAAAGATCGCAGCTTTCTACCGAAAAATACAAAT-ATTTGCAATGGATC    193
                     ||.||.|||....||||||||.|||||||.|||.| |||| ||.||.|||
BPUM_1528        145 GAGAAAATCATTTCTTTCTACAGAAAAATCCAAGTCATTT-CATTGAATC    193

BSNT_02657       194 AAGGAATAGAGGAACCGGAATGA    216
                     ||||||||||||||...||||||
BPUM_1528        194 AAGGAATAGAGGAATTTGAATGA    216


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