Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02647 and BPUM_1522

See Amino acid alignment / Visit BSNT_02647 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:15
# Commandline: needle
#    -asequence dna-align/BSNT_02647___fliI.1.24716.seq
#    -bsequence dna-align/BPUM_1522___fliI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02647___fliI-BPUM_1522___fliI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02647___fliI-BPUM_1522___fliI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02647___fliI
# 2: BPUM_1522___fliI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity:     966/1357 (71.2%)
# Similarity:   966/1357 (71.2%)
# Gaps:          80/1357 ( 5.9%)
# Score: 3346.5
# 
#
#=======================================

BSNT_02647___      1 ATGAAGACACAGAGTCTGATAGAT-TGT--ATAGAAATGA---------C     38
                     |||||            .||.||| |||  |.|||||.||         |
BPUM_1522___f      1 ATGAA------------CATCGATGTGTTAAAAGAAACGATTGAAACCGC     38

BSNT_02647___     39 AGACTCGTATAAACGGTACGGAAAAGTCAAGCGGGTAATCGGCCTGATGA     88
                     .||..|.||||||||.|..||.||||||||.||.||..|.||.|||||||
BPUM_1522___f     39 TGATCCTTATAAACGATTTGGTAAAGTCAATCGAGTTGTTGGACTGATGA     88

BSNT_02647___     89 TTGAATCAAAAGGGCCAGCAAGCTCAATTGGCGACGTGTGCCTGATTTAT    138
                     |||||||.||.|||||.|.|||.||.||.||.||||||||.||.|||.||
BPUM_1522___f     89 TTGAATCTAAGGGGCCGGAAAGTTCTATCGGAGACGTGTGTCTCATTCAT    138

BSNT_02647___    139 GCAAAAGGACAATCTGGGAAAG-----TC--ATTAAAGCTGAGGTAGTCG    181
                     ..|||.||||       |.|||     ||  ||.|||||.|||||.||.|
BPUM_1522___f    139 AAAAAGGGAC-------GTAAGCACGATCCGATAAAAGCAGAGGTTGTAG    181

BSNT_02647___    182 GCTTCCAG-GAAGAAAATATTTTGCTTATGCCTTATTTAGAGGCTGCGAG    230
                     | ||..|| ||.|||.|||||.||||.|||||||||.||||.||..|.|.
BPUM_1522___f    182 G-TTTTAGAGATGAACATATTCTGCTCATGCCTTATGTAGAAGCATCCAA    230

BSNT_02647___    231 CATTGCACCTGGCAGCATTGTAGAAGCTACTGGGGAATCACTTCGGGTTA    280
                     ||||.||||.||.||..|.||.|||||.||.||.||.||.||...|||.|
BPUM_1522___f    231 CATTTCACCAGGAAGTCTAGTTGAAGCGACAGGTGAGTCGCTAAAGGTCA    280

BSNT_02647___    281 AAGTTGGGACCGGACTGATCGGACAAGTCATCGATGCTTTTGGAGAACCG    330
                     |||||||.||.||..|.||.||..||||..|.|||||.||.||.|||||.
BPUM_1522___f    281 AAGTTGGTACGGGGTTAATTGGCGAAGTGGTTGATGCCTTCGGTGAACCA    330

BSNT_02647___    331 CTTGACGGAAAGCTTCTGCCGAAAGGG-CTTTCGCCTGTATCAACGGAGC    379
                     ||.|||||.|...|.||.|| |||||| |||.|.|||||.||.||.||.|
BPUM_1522___f    331 CTGGACGGCAGTATGCTTCC-AAAGGGACTTGCACCTGTTTCCACAGATC    379

BSNT_02647___    380 AATCACCGCCCAACCCGATGAAACGGCCGCCTATCCGTGAAAAGATGGGT    429
                     |.|||||.||.|||||||||.|..||||.|||||.||.|||||.|||||.
BPUM_1522___f    380 AGTCACCTCCAAACCCGATGGACAGGCCACCTATTCGCGAAAAAATGGGC    429

BSNT_02647___    430 GTTGGAGTCAGATCAATTGACAGCTTGCTGACAGTCGGTAAAGGCCAGCG    479
                     |||||.||||||...||.||||||.||||.||||||||||..||.|||.|
BPUM_1522___f    430 GTTGGTGTCAGAGTGATCGACAGCCTGCTTACAGTCGGTACTGGTCAGAG    479

BSNT_02647___    480 GATTGGAATTTTTGCAGGAAGCGGTGTTGGAAAAAGCACCTTAATGGGGA    529
                     ||||||.||||||||.|||||.||||||||.|||||.|||||||||||||
BPUM_1522___f    480 GATTGGGATTTTTGCTGGAAGTGGTGTTGGTAAAAGTACCTTAATGGGGA    529

BSNT_02647___    530 TGATCGCCAAGCAGACAGAGGCTGACTTAAACGTCATTGCACTTGTCGGA    579
                     ||||.||.|||||||||||.||.||..|.||.||.|||||.|||||.|||
BPUM_1522___f    530 TGATTGCGAAGCAGACAGAAGCAGATCTGAATGTGATTGCCCTTGTTGGA    579

BSNT_02647___    580 GAACGCGGACGAGAGGTTCGGGAGTTTATTGAAAAAGATCTGGGGAAAGA    629
                     ||.||.||.||.||.|||||.||||||||||||||.|||.|.||.|..||
BPUM_1522___f    580 GAGCGTGGCCGGGAAGTTCGTGAGTTTATTGAAAAGGATTTAGGTACGGA    629

BSNT_02647___    630 GGGGCTGAAACGATCGATTGTAGTCGTTGCCACCTCAGACCAGCCAGCAT    679
                     |||.||.||.|||||||||||.||||||||.||.||.||||||||.|||.
BPUM_1522___f    630 GGGACTAAAGCGATCGATTGTTGTCGTTGCAACTTCTGACCAGCCTGCAC    679

BSNT_02647___    680 TAATGAGATTGAAAGCGGCATATACAGCGACTGCCATTGCCGAGTATTTC    729
                     |||.||||.||||.||.||.||||||||.||.||.|||||.||.|||||.
BPUM_1522___f    680 TAACGAGAATGAAGGCTGCTTATACAGCAACAGCTATTGCAGAATATTTT    729

BSNT_02647___    730 CGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGT    779
                     .||||.|.|||..|||||||||||||.||||||||.|||||||||.||||
BPUM_1522___f    730 AGAGACAGAGGAAAAAATGTCATGTTCATGATGGACTCTGTTACACGGGT    779

BSNT_02647___    780 GGCAATGGCGCAGCGAGAGATTGGACTGGCTGCAGGAGAGCCTCCGACGA    829
                     .||.|||||.||..|.||.||.||.||.||..|.||.||.||.||.||||
BPUM_1522___f    780 CGCTATGGCACAAAGGGAAATCGGTCTTGCAACTGGTGAACCGCCAACGA    829

BSNT_02647___    830 CAAAAGGTTATACACCTTCAGTGTTCGCTATTTTACCTCGTTTACTAGAA    879
                     |||||||.|||||.|||||||||||||||||..|.||....|||||.|||
BPUM_1522___f    830 CAAAAGGATATACGCCTTCAGTGTTCGCTATACTGCCAAAATTACTTGAA    879

BSNT_02647___    880 CGAACAGGTGCAAACG----AGCATGGAACCATTACGGCATTTTATACAG    925
                     |||||.||    ||||    |||.|||..||||.||.||.|||||.||||
BPUM_1522___f    880 CGAACTGG----AACGAATCAGCTTGGTTCCATCACAGCGTTTTACACAG    925

BSNT_02647___    926 TGTTGGTAGACGGGGATGACATGAATGAGCCGATTGCCGATACTGTACGC    975
                     ||.|.||.||.||.||.||.|||||||||||.||.||.|||||.||..|.
BPUM_1522___f    926 TGCTTGTTGATGGTGACGATATGAATGAGCCAATCGCTGATACAGTTAGA    975

BSNT_02647___    976 GGAATTTTAGACGGACATATTGTGTTGGACAGGGCGCTTGCCAATAAAGG   1025
                     |||||.|||||.||.||.|||||..|.||..|.||..|.|||||.|||||
BPUM_1522___f    976 GGAATCTTAGATGGTCACATTGTACTTGATCGTGCTTTAGCCAACAAAGG   1025

BSNT_02647___   1026 CCAGTTTCCTGCAGTTAACGTACTAAAAAGCATCAGCAGGGTGATGTCAA   1075
                     .||.|||||.||.||.||..|.||.|||||.||||||.|.||.|||...|
BPUM_1522___f   1026 ACAATTTCCCGCTGTCAATATTCTGAAAAGTATCAGCCGTGTTATGAGCA   1075

BSNT_02647___   1076 ACATTTCAA--------CAAAACAGCATCTGGATGCGGCAAATAAATTCC   1117
                     |.||..|||        ||.||        |||.|||||.||....||||
BPUM_1522___f   1076 ATATCGCAAGTCATGATCACAA--------GGAGGCGGCCAACCGGTTCC   1117

BSNT_02647___   1118 GTGAACTTTTATCGACATATCAAAATTCGGAAGATCTCATTAATATCGGA   1167
                     |..|.||||||||.||.||||||||..|.|||||.||||||||.||.|||
BPUM_1522___f   1118 GCCAGCTTTTATCCACTTATCAAAACGCTGAAGACCTCATTAACATTGGA   1167

BSNT_02647___   1168 GCTTACAAAAGAGGATCATCCAGAGAAATTGATGAAGCGATACAATTTTA   1217
                     ||.||.||||..||.||.||.|.|||.||||||||.||.||.||...|||
BPUM_1522___f   1168 GCATATAAAAAGGGCTCCTCGAAAGACATTGATGATGCCATGCAGGCTTA   1217

BSNT_02647___   1218 TCCGCAGCTTATTCAATTTTTAAAGCAGGGAACAGACGAACCGGCTTTAT   1267
                     |||.||.||.|||..||||||.|||||||....|||.||   ||||.|||
BPUM_1522___f   1218 TCCTCATCTGATTTCATTTTTGAAGCAGGATGTAGAAGA---GGCTGTAT   1264

BSNT_02647___   1268 ---TGGAAGAAAGCATTGCTGTATTAACT-AGTTTGACAGGAAAT---GA   1310
                        |.|||||.||..|...|||||| .|| .||||||   ..|||   ||
BPUM_1522___f   1265 CTATTGAAGACAGTGTGAATGTATT-GCTCGGTTTGA---TGAATAGAGA   1310

BSNT_02647___   1311 GGAATAA   1317
                     |||.|.|
BPUM_1522___f   1311 GGATTGA   1317


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