Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02647 and BPUM_1522
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_02647___fliI.1.24716.seq
# -bsequence dna-align/BPUM_1522___fliI.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02647___fliI-BPUM_1522___fliI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02647___fliI-BPUM_1522___fliI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02647___fliI
# 2: BPUM_1522___fliI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1357
# Identity: 966/1357 (71.2%)
# Similarity: 966/1357 (71.2%)
# Gaps: 80/1357 ( 5.9%)
# Score: 3346.5
#
#
#=======================================
BSNT_02647___ 1 ATGAAGACACAGAGTCTGATAGAT-TGT--ATAGAAATGA---------C 38
||||| .||.||| ||| |.|||||.|| |
BPUM_1522___f 1 ATGAA------------CATCGATGTGTTAAAAGAAACGATTGAAACCGC 38
BSNT_02647___ 39 AGACTCGTATAAACGGTACGGAAAAGTCAAGCGGGTAATCGGCCTGATGA 88
.||..|.||||||||.|..||.||||||||.||.||..|.||.|||||||
BPUM_1522___f 39 TGATCCTTATAAACGATTTGGTAAAGTCAATCGAGTTGTTGGACTGATGA 88
BSNT_02647___ 89 TTGAATCAAAAGGGCCAGCAAGCTCAATTGGCGACGTGTGCCTGATTTAT 138
|||||||.||.|||||.|.|||.||.||.||.||||||||.||.|||.||
BPUM_1522___f 89 TTGAATCTAAGGGGCCGGAAAGTTCTATCGGAGACGTGTGTCTCATTCAT 138
BSNT_02647___ 139 GCAAAAGGACAATCTGGGAAAG-----TC--ATTAAAGCTGAGGTAGTCG 181
..|||.|||| |.||| || ||.|||||.|||||.||.|
BPUM_1522___f 139 AAAAAGGGAC-------GTAAGCACGATCCGATAAAAGCAGAGGTTGTAG 181
BSNT_02647___ 182 GCTTCCAG-GAAGAAAATATTTTGCTTATGCCTTATTTAGAGGCTGCGAG 230
| ||..|| ||.|||.|||||.||||.|||||||||.||||.||..|.|.
BPUM_1522___f 182 G-TTTTAGAGATGAACATATTCTGCTCATGCCTTATGTAGAAGCATCCAA 230
BSNT_02647___ 231 CATTGCACCTGGCAGCATTGTAGAAGCTACTGGGGAATCACTTCGGGTTA 280
||||.||||.||.||..|.||.|||||.||.||.||.||.||...|||.|
BPUM_1522___f 231 CATTTCACCAGGAAGTCTAGTTGAAGCGACAGGTGAGTCGCTAAAGGTCA 280
BSNT_02647___ 281 AAGTTGGGACCGGACTGATCGGACAAGTCATCGATGCTTTTGGAGAACCG 330
|||||||.||.||..|.||.||..||||..|.|||||.||.||.|||||.
BPUM_1522___f 281 AAGTTGGTACGGGGTTAATTGGCGAAGTGGTTGATGCCTTCGGTGAACCA 330
BSNT_02647___ 331 CTTGACGGAAAGCTTCTGCCGAAAGGG-CTTTCGCCTGTATCAACGGAGC 379
||.|||||.|...|.||.|| |||||| |||.|.|||||.||.||.||.|
BPUM_1522___f 331 CTGGACGGCAGTATGCTTCC-AAAGGGACTTGCACCTGTTTCCACAGATC 379
BSNT_02647___ 380 AATCACCGCCCAACCCGATGAAACGGCCGCCTATCCGTGAAAAGATGGGT 429
|.|||||.||.|||||||||.|..||||.|||||.||.|||||.|||||.
BPUM_1522___f 380 AGTCACCTCCAAACCCGATGGACAGGCCACCTATTCGCGAAAAAATGGGC 429
BSNT_02647___ 430 GTTGGAGTCAGATCAATTGACAGCTTGCTGACAGTCGGTAAAGGCCAGCG 479
|||||.||||||...||.||||||.||||.||||||||||..||.|||.|
BPUM_1522___f 430 GTTGGTGTCAGAGTGATCGACAGCCTGCTTACAGTCGGTACTGGTCAGAG 479
BSNT_02647___ 480 GATTGGAATTTTTGCAGGAAGCGGTGTTGGAAAAAGCACCTTAATGGGGA 529
||||||.||||||||.|||||.||||||||.|||||.|||||||||||||
BPUM_1522___f 480 GATTGGGATTTTTGCTGGAAGTGGTGTTGGTAAAAGTACCTTAATGGGGA 529
BSNT_02647___ 530 TGATCGCCAAGCAGACAGAGGCTGACTTAAACGTCATTGCACTTGTCGGA 579
||||.||.|||||||||||.||.||..|.||.||.|||||.|||||.|||
BPUM_1522___f 530 TGATTGCGAAGCAGACAGAAGCAGATCTGAATGTGATTGCCCTTGTTGGA 579
BSNT_02647___ 580 GAACGCGGACGAGAGGTTCGGGAGTTTATTGAAAAAGATCTGGGGAAAGA 629
||.||.||.||.||.|||||.||||||||||||||.|||.|.||.|..||
BPUM_1522___f 580 GAGCGTGGCCGGGAAGTTCGTGAGTTTATTGAAAAGGATTTAGGTACGGA 629
BSNT_02647___ 630 GGGGCTGAAACGATCGATTGTAGTCGTTGCCACCTCAGACCAGCCAGCAT 679
|||.||.||.|||||||||||.||||||||.||.||.||||||||.|||.
BPUM_1522___f 630 GGGACTAAAGCGATCGATTGTTGTCGTTGCAACTTCTGACCAGCCTGCAC 679
BSNT_02647___ 680 TAATGAGATTGAAAGCGGCATATACAGCGACTGCCATTGCCGAGTATTTC 729
|||.||||.||||.||.||.||||||||.||.||.|||||.||.|||||.
BPUM_1522___f 680 TAACGAGAATGAAGGCTGCTTATACAGCAACAGCTATTGCAGAATATTTT 729
BSNT_02647___ 730 CGAGATAAAGGCCAAAATGTCATGTTTATGATGGATTCTGTTACAAGGGT 779
.||||.|.|||..|||||||||||||.||||||||.|||||||||.||||
BPUM_1522___f 730 AGAGACAGAGGAAAAAATGTCATGTTCATGATGGACTCTGTTACACGGGT 779
BSNT_02647___ 780 GGCAATGGCGCAGCGAGAGATTGGACTGGCTGCAGGAGAGCCTCCGACGA 829
.||.|||||.||..|.||.||.||.||.||..|.||.||.||.||.||||
BPUM_1522___f 780 CGCTATGGCACAAAGGGAAATCGGTCTTGCAACTGGTGAACCGCCAACGA 829
BSNT_02647___ 830 CAAAAGGTTATACACCTTCAGTGTTCGCTATTTTACCTCGTTTACTAGAA 879
|||||||.|||||.|||||||||||||||||..|.||....|||||.|||
BPUM_1522___f 830 CAAAAGGATATACGCCTTCAGTGTTCGCTATACTGCCAAAATTACTTGAA 879
BSNT_02647___ 880 CGAACAGGTGCAAACG----AGCATGGAACCATTACGGCATTTTATACAG 925
|||||.|| |||| |||.|||..||||.||.||.|||||.||||
BPUM_1522___f 880 CGAACTGG----AACGAATCAGCTTGGTTCCATCACAGCGTTTTACACAG 925
BSNT_02647___ 926 TGTTGGTAGACGGGGATGACATGAATGAGCCGATTGCCGATACTGTACGC 975
||.|.||.||.||.||.||.|||||||||||.||.||.|||||.||..|.
BPUM_1522___f 926 TGCTTGTTGATGGTGACGATATGAATGAGCCAATCGCTGATACAGTTAGA 975
BSNT_02647___ 976 GGAATTTTAGACGGACATATTGTGTTGGACAGGGCGCTTGCCAATAAAGG 1025
|||||.|||||.||.||.|||||..|.||..|.||..|.|||||.|||||
BPUM_1522___f 976 GGAATCTTAGATGGTCACATTGTACTTGATCGTGCTTTAGCCAACAAAGG 1025
BSNT_02647___ 1026 CCAGTTTCCTGCAGTTAACGTACTAAAAAGCATCAGCAGGGTGATGTCAA 1075
.||.|||||.||.||.||..|.||.|||||.||||||.|.||.|||...|
BPUM_1522___f 1026 ACAATTTCCCGCTGTCAATATTCTGAAAAGTATCAGCCGTGTTATGAGCA 1075
BSNT_02647___ 1076 ACATTTCAA--------CAAAACAGCATCTGGATGCGGCAAATAAATTCC 1117
|.||..||| ||.|| |||.|||||.||....||||
BPUM_1522___f 1076 ATATCGCAAGTCATGATCACAA--------GGAGGCGGCCAACCGGTTCC 1117
BSNT_02647___ 1118 GTGAACTTTTATCGACATATCAAAATTCGGAAGATCTCATTAATATCGGA 1167
|..|.||||||||.||.||||||||..|.|||||.||||||||.||.|||
BPUM_1522___f 1118 GCCAGCTTTTATCCACTTATCAAAACGCTGAAGACCTCATTAACATTGGA 1167
BSNT_02647___ 1168 GCTTACAAAAGAGGATCATCCAGAGAAATTGATGAAGCGATACAATTTTA 1217
||.||.||||..||.||.||.|.|||.||||||||.||.||.||...|||
BPUM_1522___f 1168 GCATATAAAAAGGGCTCCTCGAAAGACATTGATGATGCCATGCAGGCTTA 1217
BSNT_02647___ 1218 TCCGCAGCTTATTCAATTTTTAAAGCAGGGAACAGACGAACCGGCTTTAT 1267
|||.||.||.|||..||||||.|||||||....|||.|| ||||.|||
BPUM_1522___f 1218 TCCTCATCTGATTTCATTTTTGAAGCAGGATGTAGAAGA---GGCTGTAT 1264
BSNT_02647___ 1268 ---TGGAAGAAAGCATTGCTGTATTAACT-AGTTTGACAGGAAAT---GA 1310
|.|||||.||..|...|||||| .|| .|||||| ..||| ||
BPUM_1522___f 1265 CTATTGAAGACAGTGTGAATGTATT-GCTCGGTTTGA---TGAATAGAGA 1310
BSNT_02647___ 1311 GGAATAA 1317
|||.|.|
BPUM_1522___f 1311 GGATTGA 1317
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