Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02635 and BPUM_1513

See Amino acid alignment / Visit BSNT_02635 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_02635___clpQ.1.24716.seq
#    -bsequence dna-align/BPUM_1513___clpQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02635___clpQ-BPUM_1513___clpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02635___clpQ-BPUM_1513___clpQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02635___clpQ
# 2: BPUM_1513___clpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 554
# Identity:     418/554 (75.5%)
# Similarity:   418/554 (75.5%)
# Gaps:          16/554 ( 2.9%)
# Score: 1535.5
# 
#
#=======================================

BSNT_02635___      1 ATGTCATCTTTTCATGCGACCACAATATTTGCCGTACAGCATAAAGGACG     50
                     ||||||||.||||||||.||.||.||.||||||||.||.||||||||...
BPUM_1513___c      1 ATGTCATCATTTCATGCAACAACCATCTTTGCCGTTCAACATAAAGGGAA     50

BSNT_02635___     51 AAGCGCTATGTCCGGAGACGGCCAAGTAACATTTGGTCAGGCTGTTGTCA    100
                     |||.||.|||.|.||||||||.|||||.||.||.||.||||||||.||.|
BPUM_1513___c     51 AAGTGCGATGGCTGGAGACGGTCAAGTCACTTTCGGGCAGGCTGTCGTGA    100

BSNT_02635___    101 TGAAACACACGGCACGGAAAGTGAGAAAACTGT-TTAAC---GGCAAAGT    146
                     ||||||||||||||...||||||.|    |.|| ||..|   |||||.||
BPUM_1513___c    101 TGAAACACACGGCAAAAAAAGTGCG----CCGTCTTTTCGGAGGCAAGGT    146

BSNT_02635___    147 TCTTGCTGGCTTTGCGGGATCTGTTGCAGACGC--TTTCACTTTATTCGA    194
                     .|||||.||.|||||.||.||.||.|||||.||  ||.|||||  ||.||
BPUM_1513___c    147 GCTTGCCGGTTTTGCAGGTTCAGTAGCAGATGCATTTACACTT--TTTGA    194

BSNT_02635___    195 AAAGTTTGAAGCTAAGCTTGAAGAATATAACGGCAACTTAAAACGGGCGG    244
                     ||||||||||.|.||.||||||||||||...||.||||||||.|||||.|
BPUM_1513___c    195 AAAGTTTGAAACGAAACTTGAAGAATATGGTGGTAACTTAAAGCGGGCAG    244

BSNT_02635___    245 CTGTTGAGCTTGCGAAGGAATGGCGCAGTGATAAAGTGCTAAGAAAGCTC    294
                     |.||.||.||.||.||.||||||||.|||||.||..||||.||..||||.
BPUM_1513___c    245 CCGTAGAACTAGCAAAAGAATGGCGTAGTGACAAGATGCTGAGGCAGCTT    294

BSNT_02635___    295 GAAGCCATGCTGATTGTTATGAATCAGGATACTTTGCTTCTCGTATCGGG    344
                     ||.|||||||||||.||||||||..|.||.|.|.|.||.||.||.||.||
BPUM_1513___c    295 GAGGCCATGCTGATCGTTATGAACAAAGACAGTATCCTGCTTGTCTCTGG    344

BSNT_02635___    345 AACAGGCGAGGTGATCGAACCAGATGACGGCATTCTCGCGATTGGATCAG    394
                     .|||||.||.||.|||||||||||||||||.|||.|.||.||.||.||||
BPUM_1513___c    345 GACAGGAGAAGTCATCGAACCAGATGACGGTATTTTGGCCATCGGCTCAG    394

BSNT_02635___    395 GAGGCAATTA--CGCTTTGGCAGCGGGAAGAGCACTGAAAAAGCATGCCG    442
                     |.||||||||  |||||.|  .||.||.||||||||.||||..|||||.|
BPUM_1513___c    395 GCGGCAATTATGCGCTTAG--TGCTGGGAGAGCACTCAAAACACATGCAG    442

BSNT_02635___    443 GTGAAAGCATGTCTGCAAGTGAGATTGCCAGAGCCGCGTTAGAAACAGCA    492
                     ||||...|.|..|.|||||.||.|||||.|..||.||..|.|||||.||.
BPUM_1513___c    443 GTGATCACCTCACAGCAAGAGATATTGCAAAGGCTGCTCTTGAAACCGCT    492

BSNT_02635___    493 GGCGAAATTTGTGTTTACACGAACGATCAAATCATACTGGAAGAGCTTGA    542
                     ||.|||||.|||||.||||||||.||||||||||...|.|||||||||||
BPUM_1513___c    493 GGAGAAATCTGTGTCTACACGAATGATCAAATCACTTTAGAAGAGCTTGA    542

BSNT_02635___    543 ATAG    546
                     ||||
BPUM_1513___c    543 ATAG    546


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