Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02634 and BPUM_1512
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_02634___xerC.1.24716.seq
# -bsequence dna-align/BPUM_1512___xerC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02634___xerC-BPUM_1512___xerC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02634___xerC-BPUM_1512___xerC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02634___xerC
# 2: BPUM_1512___xerC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity: 646/966 (66.9%)
# Similarity: 646/966 (66.9%)
# Gaps: 99/966 (10.2%)
# Score: 2059.0
#
#
#=======================================
BSNT_02634___ 1 ATGGAGAATGTTAAGAATTTCGTAAAGTTATTCGTTGAATATTTACAAAT 50
|||..||||....||..|.|.||..|.||||||.||||||||.|.|||||
BPUM_1512___x 1 ATGACGAATAAACAGCGTCTTGTCCACTTATTCATTGAATATCTGCAAAT 50
BSNT_02634___ 51 TGAAAAAAATAATTCACAATATACTATTGTGAATTA------TGTGGAT- 93
|||||||| ||||||.||..||| |..||||
BPUM_1512___x 51 TGAAAAAA--------------ACTATTCTGCTTTAACCATCTCAGGATA 86
BSNT_02634___ 94 -------TCAATTGAAGAATTCG--AGACTTTCCTGCGCGTTCAAGGTAT 134
.|.||||||||.||.| ||| ||..||..|||||||||.||
BPUM_1512___x 87 TACAGAAGCGATTGAAGAGTTTGTCAGA--TTTATGAACGTTCAAGGAAT 134
BSNT_02634___ 135 AAATGGATTTGAAGAAGCTGCATATCAAGATACTAGGATTTTTTTGACAG 184
|.|.||.||||||||.|...|.|||||||||||.||.||||.|||.||||
BPUM_1512___x 135 AGACGGTTTTGAAGAGGTATCCTATCAAGATACGAGAATTTATTTAACAG 184
BSNT_02634___ 185 AAGCCTATGAAAAAGGTTTATCGAGAAGAACAATAAGCAA-AAAGATATC 233
||||.|||||||||||..|..|.||||||||.||.||.|| |||| |.||
BPUM_1512___x 185 AAGCTTATGAAAAAGGCCTGACAAGAAGAACGATTAGTAAGAAAG-TCTC 233
BSNT_02634___ 234 TGCATTAAGAAGCTTTTATAAGTTTCTGATGCGGGAAAAGCTTATTGAAG 283
|||..|..|.|||||||||||.|||||..|..|.|||.|||||.|..|||
BPUM_1512___x 234 TGCGCTTCGCAGCTTTTATAAATTTCTATTAAGAGAACAGCTTGTGAAAG 283
BSNT_02634___ 284 AAAATCCGTT--------TCAGCTTGTTCATCTGCCAAAACAGGAGAAAC 325
|||||||.|| |.|||| |.|||||.|||||.||.|
BPUM_1512___x 284 AAAATCCTTTTTTACTCGTGAGCT--------TACCAAAGCAGGATAAGC 325
BSNT_02634___ 326 GGATACCGAAGTTTCTATATCAAAAAGAGCTTGAGGAGCTGTTTGAAGTT 375
|.||.||....|||.|.|||.||.|.||.||..|.|||||.|||..||||
BPUM_1512___x 326 GAATTCCTTCATTTTTGTATGAAGAGGAACTGAAAGAGCTTTTTACAGTT 375
BSNT_02634___ 376 TCAGATATAAGC-CAGCCGGCCGG--AATGAGGGATCAAGCGCTGTTAGA 422
||.|||.|.||| || |||...|| || ||..|.||||||.|.|||||
BPUM_1512___x 376 TCTGATGTCAGCACA-CCGCTTGGGCAA--AGAAACCAAGCGATTTTAGA 422
BSNT_02634___ 423 GCTGCTCTATGCCACCGGAATGAGGGTCAGTGAATGCTGTTCCATAACTA 472
.||.||.|||||.||.||.||||||||||||||.|..||||| |
BPUM_1512___x 423 ACTTCTTTATGCAACAGGTATGAGGGTCAGTGAGTTATGTTC-------A 465
BSNT_02634___ 473 TTAA-------CGACGTTGATTTATTTATGGACACTGTGCTTGTTCACGG 515
|||| .||..|||||||||..|||||.||.|||||.|||||.||
BPUM_1512___x 466 TTAAAAGAATCTGATCTTGATTTATCGATGGATACAGTGCTAGTTCATGG 515
BSNT_02634___ 516 TAAAGGCAAGAAGCAGCGCTATATCCCCTTTGGGTCTTATGCCCGCGAAG 565
.|||||||..||||||||.|||.|.||.|||||.||.|||||.|..||||
BPUM_1512___x 516 GAAAGGCAGCAAGCAGCGGTATGTACCTTTTGGTTCCTATGCACATGAAG 565
BSNT_02634___ 566 CGTTGAAGGTATACATGA-----ATAGCGGAAGACAGTGCT--TGCTGA- 607
||.| |||.| .|||.|||.|.||| ||| .|||||
BPUM_1512___x 566 CGCT---------CATCACTTATTTAGAGGATGGCAG-GCTCAAGCTGAA 605
BSNT_02634___ 608 --TGAAGGCAAAAGAACCTCATGATC---TAT-TATTCGTAAATCAAAGA 651
.|||||..|||||.|.|..||| | ||| ||||..|.|||||..|.
BPUM_1512___x 606 AGCGAAGGGGAAAGATCGTGCTGA-CGCTTATGTATTTTTGAATCAGCGC 654
BSNT_02634___ 652 GGCGGACCGCTTACAGCCCGTGGCATCAGACATATTTTAAGCGGGCTTGT 701
||.|..||.|||||||.|.|.|||.|..||...|||.|.|..|..||..|
BPUM_1512___x 655 GGGGCGCCTCTTACAGACAGAGGCGTTCGATTCATTCTCACTGAACTAAT 704
BSNT_02634___ 702 TCAAAAAGCGTCAAGCACTTTACATATCCATCCGCATATGCTTCGACATA 751
..||||.||||||.||||.||||||||||||||.||.|||.|..|.||.|
BPUM_1512___x 705 GAAAAAGGCGTCAGGCACATTACATATCCATCCTCACATGTTAAGGCACA 754
BSNT_02634___ 752 CGTTCGCCACGCATCTGTTAAATGAAGGAGCGGATTTGAGAAGCGTTCAA 801
|.||.|||||.||.||.||||||||.|||||||||||||||||.||||||
BPUM_1512___x 755 CCTTTGCCACACACCTCTTAAATGAGGGAGCGGATTTGAGAAGTGTTCAA 804
BSNT_02634___ 802 GAACTGCTCGGGCATTCCAATCTGTCTTCTACACAGATATACACGCACGT 851
|||||.||.||.|||||.|||.|.||.||.||.|||.|.||||||||.||
BPUM_1512___x 805 GAACTTCTTGGTCATTCGAATTTATCATCAACTCAGGTGTACACGCATGT 854
BSNT_02634___ 852 TTCGAAGGAAATGTTGAGAAACACATATATGTCTCACCATCCAAGAGCAT 901
.||.|||||....||.||.||.||.||.||||||||.||.|||||.||.|
BPUM_1512___x 855 ATCAAAGGATTCTTTAAGGAAGACGTACATGTCTCATCACCCAAGGGCTT 904
BSNT_02634___ 902 TTAAGAAAAAT--TAA 915
||| ||..|| |||
BPUM_1512___x 905 TTA--AACGATCCTAA 918
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