Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02633 and BPUM_1511
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_02633___gid.1.24716.seq
# -bsequence dna-align/BPUM_1511___gidA1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02633___gid-BPUM_1511___gidA1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02633___gid-BPUM_1511___gidA1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02633___gid
# 2: BPUM_1511___gidA1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1345
# Identity: 1007/1345 (74.9%)
# Similarity: 1007/1345 (74.9%)
# Gaps: 77/1345 ( 5.7%)
# Score: 3762.5
#
#
#=======================================
BSNT_02633___ 1 ATGAACCAACAAACAGTGAATGTAATCGGAGCCGGACTCGCAGGAAGTGA 50
|||| ..|||...||.|||||.||||||||.||..|.||.||||||||
BPUM_1511___g 1 ATGA---GTCAATTTGTAAATGTGATCGGAGCAGGTTTAGCTGGAAGTGA 47
BSNT_02633___ 51 AGCAGCATGGCAGCTTGCCAAACGGGGGATTCAAGTCAAATTGTATGAAA 100
|||.||||||||..||||.|||||.||.|||.|||||||.||.|||||||
BPUM_1511___g 48 AGCGGCATGGCAAATTGCTAAACGCGGAATTAAAGTCAACTTATATGAAA 97
BSNT_02633___ 101 TGCGGCCAGTTAAACAAACGCCTGCGCACCATACAGATAAATTTGCCGAG 150
||.|.||.||.|||||.||.||.||.|||||.||||||||||||||.|||
BPUM_1511___g 98 TGAGACCTGTCAAACATACACCAGCTCACCACACAGATAAATTTGCAGAG 147
BSNT_02633___ 151 CTTGTCTGCAGCAACTCTCTTCGCTCTAATACACTTGCTAACGCT----- 195
|||||.|||||.||.||.||.|| |||.||||||
BPUM_1511___g 148 CTTGTATGCAGTAATTCACTGCG------------TGCCAACGCTTTGAC 185
BSNT_02633___ 196 -------GTCGGTGTATTAAAGGAAGAAATGCGTGCGCTT-GATTCAGCC 237
||||||||||||||||||||||||||| |..|| ||||||||.
BPUM_1511___g 186 AAATGCGGTCGGTGTATTAAAGGAAGAAATGCGT-CATTTAGATTCAGCG 234
BSNT_02633___ 238 ATTATCGCGGCGGCTGACGAATGTTCGGTGCCTGCCGGGGGCGCTCTTGC 287
||||||||.||.||.||.|||.|.||.||||||||.||.||.||.|||||
BPUM_1511___g 235 ATTATCGCAGCAGCAGATGAAAGCTCAGTGCCTGCTGGCGGAGCGCTTGC 284
BSNT_02633___ 288 AGTAGACCGTCATGAATTTGCCGCAAGTGTGACAAATCGGGTGAAAAATC 337
||||||.||||||||||||||.||||..||.||..||||.||.|||||||
BPUM_1511___g 285 AGTAGATCGTCATGAATTTGCAGCAAACGTTACTGATCGAGTCAAAAATC 334
BSNT_02633___ 338 ATCCAAACGTAACCGTTATTAATGAAGAAGTGACTGAA---ATTCCTGAA 384
|.||.||.||.||.|||.||.|.|||||||| || || |||||.|||
BPUM_1511___g 335 ACCCGAATGTGACAGTTTTTCAAGAAGAAGT-AC--AAAGCATTCCAGAA 381
BSNT_02633___ 385 GGCCCCACTATCATCGCAACGGGTCCGTTAACATCAGAATCGCTGTCTGC 434
|||||.||.||.||.|||||.||.|||.|.|||||.|||.|.||.||
BPUM_1511___g 382 GGCCCAACAATTATTGCAACAGGCCCGCTTACATCTGAAGCACTTTC--- 428
BSNT_02633___ 435 CCAGCTGAAGGA---------GCTGACTGGAGAGGACTATTTATATTTTT 475
.||.|| |.|.||||||||.||.|||||.||.||.|
BPUM_1511___g 429 ------AAAAGAATTAAAATCGTTAACTGGAGAAGAGTATTTGTACTTCT 472
BSNT_02633___ 476 ATGACGCAGCGGCGCCGATTGTAGAAAAAGACAGCCTTGATATGGATAAA 525
|.||.||||||||.||.||..||||.|||||.|||.|||||||||||||.
BPUM_1511___g 473 ACGATGCAGCGGCACCTATCCTAGAGAAAGATAGCATTGATATGGATAAG 522
BSNT_02633___ 526 GTGTATCTGAAATCCCGTTATGATAAAGGTGAAGCAGCATATTTGAACTG 575
|||||..|||||||.||||||||||||||.|||||.||.|||||.|||||
BPUM_1511___g 523 GTGTACTTGAAATCTCGTTATGATAAAGGAGAAGCCGCTTATTTAAACTG 572
BSNT_02633___ 576 CCCGATGACAGAAGAAGAGTTTGACCGTTTTCATGAAGC----ATTAACA 621
.||.||||||||||||||.||.|||||||||.||||.|| |||
BPUM_1511___g 573 TCCAATGACAGAAGAAGAATTCGACCGTTTTTATGAGGCGCTTATT---- 618
BSNT_02633___ 622 TCAGCAGAAACAGTGCCGTTAAAAGAATTTGAAAAAGAGATTTTCTTTGA 671
||.||.||||||||.||.||||||||.||.||||||||.||.||||||||
BPUM_1511___g 619 TCTGCTGAAACAGTTCCATTAAAAGAGTTCGAAAAAGAAATCTTCTTTGA 668
BSNT_02633___ 672 AGGCTGCATGCCGATTGAAGTCATGGCAAAACGGGGTAAGAAAACAATGC 721
|||.||.|||||.||||||||||||||.|||.|.||.||||||||.|||.
BPUM_1511___g 669 AGGTTGTATGCCAATTGAAGTCATGGCGAAAAGAGGAAAGAAAACGATGT 718
BSNT_02633___ 722 TTTTCGGTCCGATGAAACCGGTTGGTCTAGAGCATCCTGTTACAGGAAAA 771
|.||.|||||||||||.||.||.||.||.||..||||....|||||||||
BPUM_1511___g 719 TGTTTGGTCCGATGAAGCCAGTAGGACTTGAAGATCCGAAAACAGGAAAA 768
BSNT_02633___ 772 CGCCCTTATGCCGTCGTTCAGCTCAGACAGGATGATGCTGCGGGAACACT 821
.|.|||||.||.||.|||||..|.|||||.||||||||.||.||.||..|
BPUM_1511___g 769 AGACCTTACGCTGTAGTTCAATTAAGACAAGATGATGCAGCAGGTACTTT 818
BSNT_02633___ 822 TTATAATATTGTAGGATTCCAGACTCATTTAAAATGGGGAGACCAAAAGG 871
.|||||.||.||.||.||||||||.|||.|.||.|||||.||||||||||
BPUM_1511___g 819 ATATAACATCGTTGGCTTCCAGACACATCTGAAGTGGGGCGACCAAAAGG 868
BSNT_02633___ 872 AAGTTCTCAAGTTGATTCCAGGGCTTGAAAATGTAGAAATCGTCAGATAT 921
||||..||...|||||||||||.||||||.|.|.||||||.||..|.|||
BPUM_1511___g 869 AAGTATTCCGCTTGATTCCAGGTCTTGAAGAAGCAGAAATTGTTCGTTAT 918
BSNT_02633___ 922 GGCGTGATGCATAGAAACACATTTATTAACTCTCCAAGCCTGTTAAAGCC 971
|||||||||||..|.||.||.||.||||||||.|||||.||.|||||.||
BPUM_1511___g 919 GGCGTGATGCACCGCAATACTTTCATTAACTCACCAAGTCTTTTAAAACC 968
BSNT_02633___ 972 GACTTATCAATTTAAAAACCGCAG-TGATCTGTTCTTTGCAGGCCAAATG 1020
.||.||.||.||||||||..| || .|||||.||||||||.||.||||||
BPUM_1511___g 969 AACGTACCAGTTTAAAAATAG-AGAAGATCTATTCTTTGCCGGACAAATG 1017
BSNT_02633___ 1021 ACGGGAGTAGAAGGATATGTGGAATCAGCTGCCTCAGGACTTGTAGCAGG 1070
||.||.||.|||||.|||||.||.||.||.||.||.|||||.||.||.||
BPUM_1511___g 1018 ACAGGCGTTGAAGGCTATGTCGAGTCCGCAGCTTCTGGACTAGTGGCTGG 1067
BSNT_02633___ 1071 CATTAATGCGGCGAAGCTTGTATTG-----GGAGAAGAGCTTGTGA-TCT 1114
.||||| ||..|||.||.||| |||||||||||||||| .||
BPUM_1511___g 1068 AATTAA-----CGCTGCTCGTTTTGTCAAAGGAGAAGAGCTTGTGACACT 1112
BSNT_02633___ 1115 TCCCTCAGGAAACAGCAATTGGCAGTATGGCACATTATATTACAACAACA 1164
| |||.||||||||||.||.|||||.|||||..||||.||||||.|||||
BPUM_1511___g 1113 T-CCTGAGGAAACAGCGATCGGCAGCATGGCTTATTACATTACATCAACA 1161
BSNT_02633___ 1165 AACCAGAAGAACTTCCAGCCGATGAATGCAAACTTTGGGCTTTTGAAAGA 1214
||..||||.|.|||||||||.||||||||.||.|||||..|.||||||||
BPUM_1511___g 1162 AATAAGAAAAGCTTCCAGCCAATGAATGCGAATTTTGGTTTGTTGAAAGA 1211
BSNT_02633___ 1215 -ATTGCCAGTTAAAATTAAAAATAAAAAAGAACGAAATGAACAATACGCG 1263
.||| ..|||...||||||||.|||.||||.|||.|||.|.|.|||||.
BPUM_1511___g 1212 TCTTG-GTGTTCGTATTAAAAACAAACAAGAGCGATATGCAGAGTACGCT 1260
BSNT_02633___ 1264 AACCGTGCGATTGAAACAATTCAAACAATTTCGAAAACAATATAG 1308
||.||.||.||.|||||.||||||||.|||||||||.|..|.|||
BPUM_1511___g 1261 AAGCGCGCAATCGAAACTATTCAAACTATTTCGAAATCTCTGTAG 1305
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