Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02629 and BPUM_1508
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_02629___sucD.1.24716.seq
# -bsequence dna-align/BPUM_1508___sucD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02629___sucD-BPUM_1508___sucD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02629___sucD-BPUM_1508___sucD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02629___sucD
# 2: BPUM_1508___sucD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity: 738/907 (81.4%)
# Similarity: 738/907 (81.4%)
# Gaps: 8/907 ( 0.9%)
# Score: 3023.0
#
#
#=======================================
BSNT_02629___ 1 ATGAGTGTTTTCATTAATAAAGATACAAGAGTTATTGTGCAAGGGATTAC 50
||||||||.||.|||||||||.||||.|||||.|||||.||.||||||||
BPUM_1508___s 1 ATGAGTGTATTTATTAATAAAAATACGAGAGTAATTGTTCAGGGGATTAC 50
BSNT_02629___ 51 AGGTTCTACCGCTTTATTTCATACGAAGCAGATGCTTGAATACGGCACAA 100
.|||||.|||||.||.||.|||||.||.||.|||.||||.|||||.||||
BPUM_1508___s 51 CGGTTCAACCGCATTGTTCCATACAAAACAAATGATTGAGTACGGAACAA 100
BSNT_02629___ 101 ATATCGTTGGCGGTGTAACACCTGGAAAAGGCGGAACAGAAGCGGAAGGT 150
||||.|||||||||||.||.|||||||||||.|||||.||||..|||||.
BPUM_1508___s 101 ATATTGTTGGCGGTGTCACTCCTGGAAAAGGTGGAACTGAAGTAGAAGGA 150
BSNT_02629___ 151 GTTCCTGTATTTAATACAGTGGCTGAAGCAGTTCAAACAACCGGCGCTAA 200
||||||||||||||||||||..|||||||.|||||||||||.||.||.||
BPUM_1508___s 151 GTTCCTGTATTTAATACAGTATCTGAAGCTGTTCAAACAACTGGAGCAAA 200
BSNT_02629___ 201 CGCGTCTGTTATATATGTGCCCGCACCGTTTGCAGCTGATGCGATTATGG 250
.||.||||||||.|||||.||.|||||.||||||||.|||||.|||.|.|
BPUM_1508___s 201 TGCTTCTGTTATCTATGTACCAGCACCATTTGCAGCAGATGCCATTTTAG 250
BSNT_02629___ 251 AAGCGGTAGATGCGGAGCTTGATCTCGTGATTTGTATCACAGAACATATC 300
|.||.||.|||||.||..|.|||||.||.||||||||.|||||||||||.
BPUM_1508___s 251 AGGCTGTTGATGCAGAAGTCGATCTAGTCATTTGTATTACAGAACATATT 300
BSNT_02629___ 301 CCGGTTTTGGATATGGTGAAGGTCAAACGCTTCATGGAAGGCAAGAAAAC 350
||.||..|.||.|||||.||.||.|||||.|..||||||||.||.||.||
BPUM_1508___s 301 CCAGTACTTGACATGGTCAAAGTGAAACGGTATATGGAAGGGAAAAAGAC 350
BSNT_02629___ 351 GAGACTGATAGGGCCGAACTGTCCTGGTGTCATTACGCCTGAAGAATGTA 400
.|||||..|.||.||.|||||.||.||.||||||||.|||||||||||||
BPUM_1508___s 351 AAGACTTGTTGGCCCTAACTGCCCAGGCGTCATTACACCTGAAGAATGTA 400
BSNT_02629___ 401 AAATCGGCATTATGCCCGGATACATCCATAAAAAGGGTCATGTAGGCGTT 450
|.||.||.||.|||||.||.|||||.||||||||.||||||||.||.|||
BPUM_1508___s 401 AGATTGGGATCATGCCAGGCTACATTCATAAAAAAGGTCATGTGGGTGTT 450
BSNT_02629___ 451 GTATCACGTTCAGGGACATTAACATACGAAGCGGTGCACCAGCTCTCAGA 500
||.||.|||||.||.||..|.|||||.||||||||.||.|||||.|||||
BPUM_1508___s 451 GTTTCTCGTTCTGGAACGCTTACATATGAAGCGGTACATCAGCTTTCAGA 500
BSNT_02629___ 501 AGCGGGTGTAGGGCAATCTACAGCTGTTGGAATCGGCGGCGACCCTGTAA 550
|||.||.||.||.||.||.||||||||.|||||||||||.||||||||.|
BPUM_1508___s 501 AGCTGGCGTTGGTCAGTCAACAGCTGTAGGAATCGGCGGAGACCCTGTCA 550
BSNT_02629___ 551 ATGGAACAAACTTTATTGACGTTTTAAAAGCGTTTAACGAAGATCCTGAC 600
||||.||||||||||||||.||.||||||||.||.||.|||||.|||||.
BPUM_1508___s 551 ATGGGACAAACTTTATTGATGTATTAAAAGCATTCAATGAAGACCCTGAT 600
BSNT_02629___ 601 ACACACGCAGTCATCATGATTGGCGAAATCGGCGGTACGGCCGAAGAGGA 650
|||||.||.|||||.|||||.||.|||||||||||||||||.|||||.||
BPUM_1508___s 601 ACACATGCTGTCATTATGATCGGTGAAATCGGCGGTACGGCTGAAGAAGA 650
BSNT_02629___ 651 AGCGGCAGAGTGGGTAAAAGCCAACATGACAAAACCGGTAGTCGGTTTTA 700
|||.||.||.|||||||||||.||.|||||||||||.||.||.|||||||
BPUM_1508___s 651 AGCAGCTGAATGGGTAAAAGCGAATATGACAAAACCTGTTGTTGGTTTTA 700
BSNT_02629___ 701 TCGGCGGTAAAACAGCACCTCCTGGGAAGCGCATGGGGCATGCAGGCGCC 750
|.|||||||||||.||.|||||.||.||.||||||||.|||||.||.|||
BPUM_1508___s 701 TTGGCGGTAAAACGGCGCCTCCAGGAAAACGCATGGGACATGCTGGTGCC 750
BSNT_02629___ 751 ATTATTTCCGGCGGAAAAGGGACAGCTGATGAAAAAATCAAAACCCTTAA 800
||||||||.||.||.|||||.|||||||||||||||.|.||||| ||
BPUM_1508___s 751 ATTATTTCTGGTGGTAAAGGAACAGCTGATGAAAAAGTAAAAAC----AA 796
BSNT_02629___ 801 TGC----ATGCGGAATCGAAGTTGCAGAGACACCTTCTGTCATGGGTGAA 846
||| |||.|||||.|||||.|||||||||||.|||||||||||.|||
BPUM_1508___s 797 TGCGTGAATGTGGAATTGAAGTGGCAGAGACACCATCTGTCATGGGAGAA 846
BSNT_02629___ 847 ACCTTAATCAAGGTGCTGAAAGAGAAGAACTTGTTCGAAACTTGTAAAAC 896
||.||.||.||.||.||.|||||||||||..|.||.|||.||||||||||
BPUM_1508___s 847 ACATTGATTAAAGTACTAAAAGAGAAGAATCTCTTTGAAGCTTGTAAAAC 896
BSNT_02629___ 897 GCATTAA 903
|||||||
BPUM_1508___s 897 GCATTAA 903
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