Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02629 and BPUM_1508

See Amino acid alignment / Visit BSNT_02629 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_02629___sucD.1.24716.seq
#    -bsequence dna-align/BPUM_1508___sucD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02629___sucD-BPUM_1508___sucD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02629___sucD-BPUM_1508___sucD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02629___sucD
# 2: BPUM_1508___sucD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity:     738/907 (81.4%)
# Similarity:   738/907 (81.4%)
# Gaps:           8/907 ( 0.9%)
# Score: 3023.0
# 
#
#=======================================

BSNT_02629___      1 ATGAGTGTTTTCATTAATAAAGATACAAGAGTTATTGTGCAAGGGATTAC     50
                     ||||||||.||.|||||||||.||||.|||||.|||||.||.||||||||
BPUM_1508___s      1 ATGAGTGTATTTATTAATAAAAATACGAGAGTAATTGTTCAGGGGATTAC     50

BSNT_02629___     51 AGGTTCTACCGCTTTATTTCATACGAAGCAGATGCTTGAATACGGCACAA    100
                     .|||||.|||||.||.||.|||||.||.||.|||.||||.|||||.||||
BPUM_1508___s     51 CGGTTCAACCGCATTGTTCCATACAAAACAAATGATTGAGTACGGAACAA    100

BSNT_02629___    101 ATATCGTTGGCGGTGTAACACCTGGAAAAGGCGGAACAGAAGCGGAAGGT    150
                     ||||.|||||||||||.||.|||||||||||.|||||.||||..|||||.
BPUM_1508___s    101 ATATTGTTGGCGGTGTCACTCCTGGAAAAGGTGGAACTGAAGTAGAAGGA    150

BSNT_02629___    151 GTTCCTGTATTTAATACAGTGGCTGAAGCAGTTCAAACAACCGGCGCTAA    200
                     ||||||||||||||||||||..|||||||.|||||||||||.||.||.||
BPUM_1508___s    151 GTTCCTGTATTTAATACAGTATCTGAAGCTGTTCAAACAACTGGAGCAAA    200

BSNT_02629___    201 CGCGTCTGTTATATATGTGCCCGCACCGTTTGCAGCTGATGCGATTATGG    250
                     .||.||||||||.|||||.||.|||||.||||||||.|||||.|||.|.|
BPUM_1508___s    201 TGCTTCTGTTATCTATGTACCAGCACCATTTGCAGCAGATGCCATTTTAG    250

BSNT_02629___    251 AAGCGGTAGATGCGGAGCTTGATCTCGTGATTTGTATCACAGAACATATC    300
                     |.||.||.|||||.||..|.|||||.||.||||||||.|||||||||||.
BPUM_1508___s    251 AGGCTGTTGATGCAGAAGTCGATCTAGTCATTTGTATTACAGAACATATT    300

BSNT_02629___    301 CCGGTTTTGGATATGGTGAAGGTCAAACGCTTCATGGAAGGCAAGAAAAC    350
                     ||.||..|.||.|||||.||.||.|||||.|..||||||||.||.||.||
BPUM_1508___s    301 CCAGTACTTGACATGGTCAAAGTGAAACGGTATATGGAAGGGAAAAAGAC    350

BSNT_02629___    351 GAGACTGATAGGGCCGAACTGTCCTGGTGTCATTACGCCTGAAGAATGTA    400
                     .|||||..|.||.||.|||||.||.||.||||||||.|||||||||||||
BPUM_1508___s    351 AAGACTTGTTGGCCCTAACTGCCCAGGCGTCATTACACCTGAAGAATGTA    400

BSNT_02629___    401 AAATCGGCATTATGCCCGGATACATCCATAAAAAGGGTCATGTAGGCGTT    450
                     |.||.||.||.|||||.||.|||||.||||||||.||||||||.||.|||
BPUM_1508___s    401 AGATTGGGATCATGCCAGGCTACATTCATAAAAAAGGTCATGTGGGTGTT    450

BSNT_02629___    451 GTATCACGTTCAGGGACATTAACATACGAAGCGGTGCACCAGCTCTCAGA    500
                     ||.||.|||||.||.||..|.|||||.||||||||.||.|||||.|||||
BPUM_1508___s    451 GTTTCTCGTTCTGGAACGCTTACATATGAAGCGGTACATCAGCTTTCAGA    500

BSNT_02629___    501 AGCGGGTGTAGGGCAATCTACAGCTGTTGGAATCGGCGGCGACCCTGTAA    550
                     |||.||.||.||.||.||.||||||||.|||||||||||.||||||||.|
BPUM_1508___s    501 AGCTGGCGTTGGTCAGTCAACAGCTGTAGGAATCGGCGGAGACCCTGTCA    550

BSNT_02629___    551 ATGGAACAAACTTTATTGACGTTTTAAAAGCGTTTAACGAAGATCCTGAC    600
                     ||||.||||||||||||||.||.||||||||.||.||.|||||.|||||.
BPUM_1508___s    551 ATGGGACAAACTTTATTGATGTATTAAAAGCATTCAATGAAGACCCTGAT    600

BSNT_02629___    601 ACACACGCAGTCATCATGATTGGCGAAATCGGCGGTACGGCCGAAGAGGA    650
                     |||||.||.|||||.|||||.||.|||||||||||||||||.|||||.||
BPUM_1508___s    601 ACACATGCTGTCATTATGATCGGTGAAATCGGCGGTACGGCTGAAGAAGA    650

BSNT_02629___    651 AGCGGCAGAGTGGGTAAAAGCCAACATGACAAAACCGGTAGTCGGTTTTA    700
                     |||.||.||.|||||||||||.||.|||||||||||.||.||.|||||||
BPUM_1508___s    651 AGCAGCTGAATGGGTAAAAGCGAATATGACAAAACCTGTTGTTGGTTTTA    700

BSNT_02629___    701 TCGGCGGTAAAACAGCACCTCCTGGGAAGCGCATGGGGCATGCAGGCGCC    750
                     |.|||||||||||.||.|||||.||.||.||||||||.|||||.||.|||
BPUM_1508___s    701 TTGGCGGTAAAACGGCGCCTCCAGGAAAACGCATGGGACATGCTGGTGCC    750

BSNT_02629___    751 ATTATTTCCGGCGGAAAAGGGACAGCTGATGAAAAAATCAAAACCCTTAA    800
                     ||||||||.||.||.|||||.|||||||||||||||.|.|||||    ||
BPUM_1508___s    751 ATTATTTCTGGTGGTAAAGGAACAGCTGATGAAAAAGTAAAAAC----AA    796

BSNT_02629___    801 TGC----ATGCGGAATCGAAGTTGCAGAGACACCTTCTGTCATGGGTGAA    846
                     |||    |||.|||||.|||||.|||||||||||.|||||||||||.|||
BPUM_1508___s    797 TGCGTGAATGTGGAATTGAAGTGGCAGAGACACCATCTGTCATGGGAGAA    846

BSNT_02629___    847 ACCTTAATCAAGGTGCTGAAAGAGAAGAACTTGTTCGAAACTTGTAAAAC    896
                     ||.||.||.||.||.||.|||||||||||..|.||.|||.||||||||||
BPUM_1508___s    847 ACATTGATTAAAGTACTAAAAGAGAAGAATCTCTTTGAAGCTTGTAAAAC    896

BSNT_02629___    897 GCATTAA    903
                     |||||||
BPUM_1508___s    897 GCATTAA    903


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