Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02626 and BPUM_1505
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_02626___ylqG.1.24716.seq
# -bsequence dna-align/BPUM_1505.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02626___ylqG-BPUM_1505.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02626___ylqG-BPUM_1505.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02626___ylqG
# 2: BPUM_1505
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2061
# Identity: 1068/2061 (51.8%)
# Similarity: 1068/2061 (51.8%)
# Gaps: 654/2061 (31.7%)
# Score: 2222.5
#
#
#=======================================
BSNT_02626___ 1 ATGAACATACGAAATGATGTGCAAAAGGCGCTGCAGCACCTTTTCGGGCG 50
||||..|.|....|.|||.|.|| |.|||||| .|
BPUM_1505 1 ATGACAAGAGTTGAGGATATACA--------TACAGCAC---------TG 33
BSNT_02626___ 51 TACAGCCGTCCCGCAGGAAACATCAAAAG---------TAAA---CGAAG 88
.|.||||| ||.|.|.||..||.||| |||| |||||
BPUM_1505 34 AATAGCCG----GCTGAATACGGCAGAAGCTGTGCCATTAAACACCGAAG 79
BSNT_02626___ 89 CGCTAAACGGGGAGAA---GCGTC------TCCTCTTAGGAAAAGTGCTT 129
.||| |||.|| ||.|| |.||| ||.|||||.||.
BPUM_1505 80 ---GAAA---GGAAAATGTGCATCGGTTGATTCTC---GGTAAAGTACTG 120
BSNT_02626___ 130 CGTTTACTAGGAGATCAGCATGCCCTGATCCAAGTCGGCAATCAAACTGT 179
....|.||.||||||.|....|||||..|.|||.|.||| ||||
BPUM_1505 121 AAAATGCTCGGAGATGATACGGCCCTTGTTCAAATAGGC--TCAA----- 163
BSNT_02626___ 180 TCAGGGAAAACTTGAAA-CCCAGCT-TCGTCCTCAG------------GC 215
|| |||| |.||| |.||||| .|| .||||| ||
BPUM_1505 164 -CA---AAAA--TAAAAGCGCAGCTAGCG-GCTCAGCTCAAAGCAGACGC 206
BSNT_02626___ 216 ATACTATTGGTTTTCC--TACGAAAAAAA------AACGGCAG----AGC 253
||..|||||| |||| |..|||.||.| | ||||| |..
BPUM_1505 207 ATTTTATTGG--TTCCAATTTGAACAAGAGGGTGGA--GGCAGCCTCAAT 252
BSNT_02626___ 254 AAAC--AGGCC-GTCTTCAGGTCGTTCAAAGCTTTGATCAAAATCCTAAA 300
|||| ||||| ||| ||| ||| |||||.|||.|||||||.
BPUM_1505 253 AAACTAAGGCCAGTC--CAG------CAA---TTTGACCAAGATCCTAAG 291
BSNT_02626___ 301 ACCATT-CAGGATGCAGCTGGCAAGCTTTTA-AATGCCATGTCAGTGAAG 348
| |||| .||||||||||||.|||..|.||| ||.|.| |.||..||||
BPUM_1505 292 A-CATTAAAGGATGCAGCTGCCAAATTATTAGAAGGTC-TCTCTCTGAA- 338
BSNT_02626___ 349 ACGTCAAACGCAGCTCTCATGATGACAGGAGCGATGCTGAAGAGCAAAAC 398
|||||.| |.|||..||| .||.||.||| .||
BPUM_1505 339 -----AAACGGA-----CTTGAAAACA--------TCTTAACAGC--TAC 368
BSNT_02626___ 399 ACC---CGTAACAGAA------------AATGA--------TATCAAAAC 425
|.| ..|||.|||| ||||| || |||||
BPUM_1505 369 AGCTTTTTTAAAAGAAAAGTCCGTCATCAATGAGGCAGAATTA--AAAAC 416
BSNT_02626___ 426 AGCTGTCCGCTGGATGGACAC-GCTGCCTTCGCAAGACAC-------AAA 467
.||.||....|||||.|| || ||| .||||..|| |||
BPUM_1505 417 GGCAGTGAAATGGATCGA-ACAGCT------TCAAGGAACTGATGTGAAA 459
BSNT_02626___ 468 AAAAG----CAGTTGAAACGGTTCTCTTCGCTTTAAAGCGTGATCTT-CC 512
|||.| |||| |..|.||.||.||||||||....|| ||| ||
BPUM_1505 460 AAAGGTCTCCAGT-----CACTCCTATTTGCTTTAAAAAAAGA-CTTGCC 503
BSNT_02626___ 513 CATTCACTCCGA--GATT--TTGAATGGTGTTCACGCTGTGAA---ATCG 555
.||||| .|| ||.| ||.|||....||.| ||.||||| |||.
BPUM_1505 504 GATTCA---GGAAGGAGTACTTCAATCCATTTTA-GCCGTGAAATCATCC 549
BSNT_02626___ 556 CCTGTTCCGTTGCATCAGCACGTATCCCA--GCTGCT------------A 591
.|||.|| |.||||||.| |||..|| |||||| |
BPUM_1505 550 TCTGCTC---TCCATCAGGA--TATGACAGCGCTGCTAGAACGCTTAACA 594
BSNT_02626___ 592 CAGGCAATCGACCAAAACCCTCAGCAGA-GCCAAATGATGTCAAAG---C 637
||| |..||.||.|.|| |||| |||| ||.|| |
BPUM_1505 595 CAG-----CTCCCGAAGCACT---CAGACGCCA--------CACAGGCCC 628
BSNT_02626___ 638 TAAAGGAAG---------CAGTTA-CGGTGCTTTTAAATAGTGAAATCGA 677
|.|...||| |||||| .|||||| |.||.|.|
BPUM_1505 629 TTACACAAGCCGTTCGATCAGTTATAGGTGCT--------GAGACAAC-- 668
BSNT_02626___ 678 TGTCCATGCAGAACGGCTAATTGATAAGCTTAT------TTCTTTAACCG 721
|||||||||||||..||| ||||| ||||...|.||
BPUM_1505 669 TGTCCATGCAGAAAAGCT----------CTTATCGCTCCTTCTAGCAGCG 708
BSNT_02626___ 722 ACAATACGAAAGCACCTTCTCCGGCGAATACAGCTGGAAGCAGGGAG--- 768
|.| |||.| |||| || ||||||.||||
BPUM_1505 709 AGA----GAAGG----------GGCG------GC--GAAGCAAGGAGGAA 736
BSNT_02626___ 769 ------CT-TAG-----CACACC--AGCTGGCTCCCCCGGAAAAGCCAGC 804
|| ||| || |.| |.|||.|||..|| |||||
BPUM_1505 737 ATCTACCTGTAGTGCCTCA-ATCTAATCTGTCTCAACC--AAAAG----- 778
BSNT_02626___ 805 CTGCCGATTGCAAA----TC---ACACAGCAGAACAGGGAAGCATACAAG 847
||| || ||.|||.||.|||.| |||.| .||
BPUM_1505 779 -----------AAACTAGTCAGAACCCAGTAGCACAAG--AGCGT--CAG 813
BSNT_02626___ 848 AAGAGC----TTGTTAAAAC-----AGCAGCAGAC----ATTCCAATTAA 884
|.||.| ||.||.||.| .||||||..| |.|||| ||
BPUM_1505 814 ACGACCCAAGTTATTCAATCTAACGTGCAGCAATCAACAAGTCCA---AA 860
BSNT_02626___ 885 AG-------AAGCCCGC--CAGCTGCTGGTGAAGCTGA-CGGAATCTGCT 924
|| ||.||||| |||| ||..||| |||| |.||
BPUM_1505 861 AGAGCTGCAAATCCCGCCTCAGC--------AAATTGAGCGGA---TACT 899
BSNT_02626___ 925 GAAAAAAACAGTCTCCAAATTG-TGAAAGAA-----------GCAGCAAA 962
.|.| ||| ||| |||||.|| |||||||
BPUM_1505 900 TACA-----AGT-------TTGATGAAACAAGGTGCAGATGGGCAGCAA- 936
BSNT_02626___ 963 TTGGA-------TTAAAGCGGCT------------------GCTTCATCG 987
|| |||||.|.||| ||||||.|.
BPUM_1505 937 ---GAGCCTAACTTAAAACAGCTCACGTCATTGCTGCAAGGGCTTCAGCA 983
BSNT_02626___ 988 GG--TGATAGTAAGTCACTTGCAGCTTCAGCTGTTTTACAAGCGGCACAA 1035
|| .||| .|.||.|...||||....||.|||| ||..||.||
BPUM_1505 984 GGCAGGAT-CTCAGCCGGATGCAAAAGCAACTGT-------GCTCCAAAA 1025
BSNT_02626___ 1036 ---------------GTCACAGACCAGGAAGCCGAAGTCTTTTTAAAGGC 1070
|||| |.|.||| ||.||||..|.|| |||
BPUM_1505 1026 AGAATTTCCGTTCCTGTCA-AAAACAG--AGGCGAAAGCATT-----GGC 1067
BSNT_02626___ 1071 T------GTTCAGCAGACAGCACCC-CATTTGGCGGATAAGGCAGATGTT 1113
| ||.||||||||.|.|||| .|||..|| .||||..|.|||||.
BPUM_1505 1068 TCAGGTGGTACAGCAGACGGAACCCGTATTAAGC-AATAAAACCGATGTG 1116
BSNT_02626___ 1114 CTTTCTTT-CTTAT--CCAAAGTGAAAACGGCAATCGGCGCAAGGGACGA 1160
||...||| ||.|| |.| ||||||.||||||.||.|.|.|.||.||
BPUM_1505 1117 CTCGATTTACTCATGACGA---TGAAAAAGGCAATAGGTGTACGTGATGA 1163
BSNT_02626___ 1161 ----GGT-TGCGTTCATTAAAGCGTTTGAACAAGGAAGCGCAGTCACATC 1205
||| ||| |.|||....|.|||.||| |||||||
BPUM_1505 1164 AATCGGTATGC-----TGAAACTACTCGAAAAAG-----GCAGTCA---- 1199
BSNT_02626___ 1206 TGGCGAAATGCAATCCATCA--AGCT-----------GGCTCTTTCTGCC 1242
|| |||.||...|||| |||| .||||.||
BPUM_1505 1200 -GG----ATGTAAAAAATCAGGAGCTTCACCAATTAAAGCTCGTT----- 1239
BSNT_02626___ 1243 TTAA-------GAGCATCGCA---TGAGGTAGCCGAACCAGTCAAACAAG 1282
|||| ||| ||| |||..||.|.||.||.||.|||.|||
BPUM_1505 1240 TTAAATGATGTGAG----GCAGTCTGATTTACCAGAGCCCGTAAAAAAAG 1285
BSNT_02626___ 1283 AAGCCGATCAGCTTTTTCATAAATTAAATGGCCAGCTTTTCATGCAGCAG 1332
|||.||||||..|.|||||||.|||.||.||.|||.|.||..||||.|||
BPUM_1505 1286 AAGTCGATCAATTGTTTCATAGATTGAACGGGCAGTTATTTGTGCATCAG 1335
BSNT_02626___ 1333 GACCATC-CATCATACAGCCAAATTGTAATGTCATTTCCGATGTTTTCGA 1381
||..||| .|.||| |||||||||..||.|.||.|.||||.|.|||||.|
BPUM_1505 1336 GAAAATCAAACCAT-CAGCCAAATGATAGTCTCTTATCCGCTCTTTTCAA 1384
BSNT_02626___ 1382 -----AGTCAGGGGTTCAGGACATGACTGTTCTGTTTAAAGGA---AAGA 1423
||| |||||.||..|.||..||.|..|.|||||| ||||
BPUM_1505 1385 AACATAGT-----GTTCAAGATTTAACCTTTATTCTAAAAGGACATAAGA 1429
BSNT_02626___ 1424 AAGAAGCGGATGG----AAAGCTTGATCCTTCCCATTGCCGCCTTTTGTT 1469
||.|| ||||| | |.|||..|||.||.||.||.||..||||
BPUM_1505 1430 AAAAA---GATGGGTCTA----TAGATATTTCTCAGTGTCGGCTCATGTT 1472
BSNT_02626___ 1470 TTTGCTGCAGCTTGATACACTAAAA----GAAACCGTCG--------TTG 1507
|| |||.||| ||||.|.||| ||.
BPUM_1505 1473 TT----------------ACTTAAACATGGAAAACCTCGAGGAAACATTA 1506
BSNT_02626___ 1508 ATTG-CTTGGTA-----CAACAAAAAGTCATGACCATTACAATAGAGACT 1551
||.| || ||| ||.|||||.||.|||.|.||||||.|.||.|||
BPUM_1505 1507 ATCGACT--GTACGATTCAGCAAAAGGTTATGTCAATTACAGTTGAAACT 1554
BSNT_02626___ 1552 GATTTCGAGCTGCAGGCTGCG----ATCGATCCGATGGTGCCCGCGCTTA 1597
|.|...||.||.||.| | ||..||||||||.|.||.||..||
BPUM_1505 1555 GGTCATGAACTTCAAG----GAATCATTAATCCGATGATTCCAGCTGTT- 1599
BSNT_02626___ 1598 AACAGGGGCTAAAGGAAATG-----GGGTACAGCCTTTCAGGGGTAAACG 1642
.|||..||...||||| ||.||.||||||.|||||.|.|..|
BPUM_1505 1600 ----CGGGAGAATTTAAATGCCTTAGGATATAGCCTTACAGGGATTACAG 1645
BSNT_02626___ 1643 CTAAAAAAAGGGTTCACACCGAAGAAAAG-GCTTCAATCGATC------- 1684
| |||.||| |||.||| || ||.|.||||
BPUM_1505 1646 C--AAAGAAG------------AGACAAGAGC--CAGTAGATCCGTCTCA 1679
BSNT_02626___ 1685 ---AATATAT-AACA-------AGTATCAGTGATCAGGAAG---TGGATG 1720
..||.|| |||| |..|||||.| ||.||| ||||..
BPUM_1505 1680 CTTTCTAGATGAACACTTTCATAAAATCAGCG---AGAAAGGGCTGGACT 1726
BSNT_02626___ 1721 TGAAAATATGA 1731
|...|.|||||
BPUM_1505 1727 TACGAGTATGA 1737
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