Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02618 and BPUM_1500

See Amino acid alignment / Visit BSNT_02618 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02618___rimM.1.24716.seq
#    -bsequence dna-align/BPUM_1500___rimM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02618___rimM-BPUM_1500___rimM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02618___rimM-BPUM_1500___rimM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02618___rimM
# 2: BPUM_1500___rimM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity:     372/572 (65.0%)
# Similarity:   372/572 (65.0%)
# Gaps:          94/572 (16.4%)
# Score: 1132.5
# 
#
#=======================================

BSNT_02618___      1 ATG--ACAAAGCG-ATGGTTTAACGTAGGCAAAATCGTAAATACCCACGG     47
                     |||  ||||   | ||||||.||.||.||.||.||.||.|||||.|||||
BPUM_1500___r      1 ATGGAACAA---GAATGGTTGAATGTTGGAAAGATTGTCAATACACACGG     47

BSNT_02618___     48 AATCAAAGGCGAAGTGCGGGTGATTTCAAAAACAGATTTTGCCGAAGAAC     97
                     |.|....||.|||||.||.||..|.|||||.||||||||..|.|||||.|
BPUM_1500___r     48 AGTACGCGGAGAAGTACGCGTCGTGTCAAAGACAGATTTCCCAGAAGAGC     97

BSNT_02618___     98 GATACAAGCCGGGAAACACGCTGTATTTGTTTATGGACGGCCGTAACGAA    147
                     |.|||||....||||.|...||.|||.|.||||           ||| ||
BPUM_1500___r     98 GTTACAAAAAAGGAAGCGTCCTCTATATCTTTA-----------AAC-AA    135

BSNT_02618___    148 ---CCAGTGGAG---------GTAACGGTAAACA-CACATAGACTGCATA    184
                        |.||.||||         ||.||.|| ..|| |||||||.|.|||||
BPUM_1500___r    136 GGTCAAGGGGAGCCGCTGAAAGTCACTGT-CGCATCACATAGGCAGCATA    184

BSNT_02618___    185 AGCAATTTCATCTCCTGCA-GTTTAAAGAAA----GACAAAACCTAAATG    229
                     |.||.|||.||.|.|| || .|||.||||||    ..||    .||||||
BPUM_1500___r    185 AACAGTTTGATTTGCT-CACATTTGAAGAAATTAGCTCA----TTAAATG    229

BSNT_02618___    230 AAGTAGAAGAGC---TGAAAAACGCAATCATTAAAGTTCCTGAAGAAGAA    276
                     |   ||.|||||   |||||.|..|||||.|.|||||   .|||.|||||
BPUM_1500___r    230 A---AGCAGAGCTATTGAAAGAATCAATCTTAAAAGT---AGAAAAAGAA    273

BSNT_02618___    277 ------------TTAGGAGAGCTGAATGAGGGTGAATTTTATTTCCACGA    314
                                 ||||         ||||.||.||.||||||||||||.|
BPUM_1500___r    274 CATCTCGGCTCTTTAG---------ATGAAGGAGAGTTTTATTTCCACCA    314

BSNT_02618___    315 AATTATTGGGTGTGAAGTATTTAC--TGAAGAAGGCGAACTCA-----TC    357
                     |||.|||||.|||||||||  |||  ||||||    ||| |||     ||
BPUM_1500___r    315 AATCATTGGCTGTGAAGTA--TACGATGAAGA----GAA-TCAGCTTGTC    357

BSNT_02618___    358 GG--AAAGGTCAAAGAAATTTTGACGCCTGGAGCCAATGACGTTTGGGTC    405
                     ||  |||  |||||||.|||||.||.||.||.||.|||||.||.||||||
BPUM_1500___r    358 GGTCAAA--TCAAAGAGATTTTAACACCAGGGGCAAATGATGTCTGGGTC    405

BSNT_02618___    406 ATCGGACGAAAAGGAAAAAAAGACGCACTCATTCCTTACATTGAATCAGT    455
                     .|||||.|||||||.||||||||.||..|.||||||||.||...|||.||
BPUM_1500___r    406 GTCGGAAGAAAAGGTAAAAAAGATGCCTTGATTCCTTATATCCCATCTGT    455

BSNT_02618___    456 GGTCAAACATATCG--ATGTCAGGGAAAAGAAAATTGAGATTGAACTCAT    503
                     .||||||.|.||||  ||.|||...|||  |..||..|.||||||.|.||
BPUM_1500___r    456 CGTCAAAAAGATCGATATCTCATCCAAA--ACCATACACATTGAAGTGAT    503

BSNT_02618___    504 GGAAGGGTTAATAGACGAATGA    525
                     ||||||..|.||.|||||||||
BPUM_1500___r    504 GGAAGGACTCATTGACGAATGA    525


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