Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02617 and BPUM_1499
See
Amino acid alignment /
Visit
BSNT_02617 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:12
# Commandline: needle
# -asequence dna-align/BSNT_02617___ylqD.1.24716.seq
# -bsequence dna-align/BPUM_1499.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02617___ylqD-BPUM_1499.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02617___ylqD-BPUM_1499.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02617___ylqD
# 2: BPUM_1499
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 406
# Identity: 272/406 (67.0%)
# Similarity: 272/406 (67.0%)
# Gaps: 38/406 ( 9.4%)
# Score: 852.5
#
#
#=======================================
BSNT_02617___ 1 ATGCAAATTATTCACCGTGTAGCCGTTATGCAAGTCTTAACCGAGCGCAG 50
|||||.||.|||||.|.|||..||||.||||||||.|||||.||..||||
BPUM_1499 1 ATGCAGATCATTCAACATGTCACCGTCATGCAAGTATTAACTGAAAGCAG 50
BSNT_02617___ 51 CAAAGAAAAGCTTTTAGCTTCTTTTGCCGAAAAGAAACAAATGCTTGAAC 100
.||.||.||.||.|||.|..|||||...||.||.|||.|||..||.||.|
BPUM_1499 51 TAAGGACAAACTGTTAACGACTTTTTTGGAGAAAAAAGAAAGACTAGAGC 100
BSNT_02617___ 101 GAGAATGCAGCCAGCTCTATTTTCAGCTTAGAAAACATGAGAAAGAA--- 147
|.|||||||..||.||.||||||||.||.|.|||||||||.||||||
BPUM_1499 101 GTGAATGCAATCAACTATATTTTCAACTGAAAAAACATGAAAAAGAACCA 150
BSNT_02617___ 148 ---CAGCAA-AATCCTGATATGATTGAACAATTTAAAAAGGCAATAGAAA 193
|||||| ||.|| ||....||||||.||||.||.||.||.|
BPUM_1499 151 CATCAGCAAGAAGCC-------ATCCCTCAATTTCAAAAAGCCATCGATA 193
BSNT_02617___ 194 AGCGAAAAGATGATATAAAAATC------ATCGATTTTCAAATTGCTCAA 237
|.||..|.|| .|||||| ||.||.||||||.|.|..||.
BPUM_1499 194 AACGGCAGGA------GAAAATCCAGCAAATTGACTTTCAAGTAGAGCAG 237
BSNT_02617___ 238 GTACATACATTGCCGCTTGGCAGTGAGTTGAAAGAAAAGGAAGTCGATGC 287
.|.||||..|||||||||||.|||||..|||||||.|..|||||.|||||
BPUM_1499 238 CTGCATATTTTGCCGCTTGGAAGTGAAATGAAAGAGACAGAAGTGGATGC 287
BSNT_02617___ 288 GCT-GCTGACGATTGAAGCC---GGGGATGACTGGCATGAGAAAA--CAG 331
||| |.||| |.|||| | ||.|||.|.|||.||||.|||| ||
BPUM_1499 288 GCTGGTTGA--AGTGAA--CATAGGTGATAAATGGGATGACAAAATGCA- 332
BSNT_02617___ 332 CAGCGAACACCATCGTCATAAAAGACGGAAAAGTAATTGAAATTCGCCAG 381
||..||...||||||..|.||||||||.|...|..|.|||||.||.|||
BPUM_1499 333 -AGATAATGTCATCGTTGTGAAAGACGGCACCATTGTGGAAATACGTCAG 381
BSNT_02617___ 382 AGGTGA 387
.|||||
BPUM_1499 382 GGGTGA 387
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.