Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02617 and BPUM_1499

See Amino acid alignment / Visit BSNT_02617 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02617___ylqD.1.24716.seq
#    -bsequence dna-align/BPUM_1499.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02617___ylqD-BPUM_1499.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02617___ylqD-BPUM_1499.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02617___ylqD
# 2: BPUM_1499
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 406
# Identity:     272/406 (67.0%)
# Similarity:   272/406 (67.0%)
# Gaps:          38/406 ( 9.4%)
# Score: 852.5
# 
#
#=======================================

BSNT_02617___      1 ATGCAAATTATTCACCGTGTAGCCGTTATGCAAGTCTTAACCGAGCGCAG     50
                     |||||.||.|||||.|.|||..||||.||||||||.|||||.||..||||
BPUM_1499          1 ATGCAGATCATTCAACATGTCACCGTCATGCAAGTATTAACTGAAAGCAG     50

BSNT_02617___     51 CAAAGAAAAGCTTTTAGCTTCTTTTGCCGAAAAGAAACAAATGCTTGAAC    100
                     .||.||.||.||.|||.|..|||||...||.||.|||.|||..||.||.|
BPUM_1499         51 TAAGGACAAACTGTTAACGACTTTTTTGGAGAAAAAAGAAAGACTAGAGC    100

BSNT_02617___    101 GAGAATGCAGCCAGCTCTATTTTCAGCTTAGAAAACATGAGAAAGAA---    147
                     |.|||||||..||.||.||||||||.||.|.|||||||||.||||||   
BPUM_1499        101 GTGAATGCAATCAACTATATTTTCAACTGAAAAAACATGAAAAAGAACCA    150

BSNT_02617___    148 ---CAGCAA-AATCCTGATATGATTGAACAATTTAAAAAGGCAATAGAAA    193
                        |||||| ||.||       ||....||||||.||||.||.||.||.|
BPUM_1499        151 CATCAGCAAGAAGCC-------ATCCCTCAATTTCAAAAAGCCATCGATA    193

BSNT_02617___    194 AGCGAAAAGATGATATAAAAATC------ATCGATTTTCAAATTGCTCAA    237
                     |.||..|.||      .||||||      ||.||.||||||.|.|..||.
BPUM_1499        194 AACGGCAGGA------GAAAATCCAGCAAATTGACTTTCAAGTAGAGCAG    237

BSNT_02617___    238 GTACATACATTGCCGCTTGGCAGTGAGTTGAAAGAAAAGGAAGTCGATGC    287
                     .|.||||..|||||||||||.|||||..|||||||.|..|||||.|||||
BPUM_1499        238 CTGCATATTTTGCCGCTTGGAAGTGAAATGAAAGAGACAGAAGTGGATGC    287

BSNT_02617___    288 GCT-GCTGACGATTGAAGCC---GGGGATGACTGGCATGAGAAAA--CAG    331
                     ||| |.|||  |.||||  |   ||.|||.|.|||.||||.||||  || 
BPUM_1499        288 GCTGGTTGA--AGTGAA--CATAGGTGATAAATGGGATGACAAAATGCA-    332

BSNT_02617___    332 CAGCGAACACCATCGTCATAAAAGACGGAAAAGTAATTGAAATTCGCCAG    381
                      ||..||...||||||..|.||||||||.|...|..|.|||||.||.|||
BPUM_1499        333 -AGATAATGTCATCGTTGTGAAAGACGGCACCATTGTGGAAATACGTCAG    381

BSNT_02617___    382 AGGTGA    387
                     .|||||
BPUM_1499        382 GGGTGA    387


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.