Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02612 and BPUM_1495

See Amino acid alignment / Visit BSNT_02612 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02612___ylxM.1.24716.seq
#    -bsequence dna-align/BPUM_1495___ylxM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02612___ylxM-BPUM_1495___ylxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02612___ylxM-BPUM_1495___ylxM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02612___ylxM
# 2: BPUM_1495___ylxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity:     265/340 (77.9%)
# Similarity:   265/340 (77.9%)
# Gaps:          14/340 ( 4.1%)
# Score: 1036.0
# 
#
#=======================================

BSNT_02612___      1 ATGTCACTCGAAAAGACAACGAGAATGAATTATCTGTTTGATTTTTATCA     50
                     |||.|.||.|||||.||||||||||||||.||..|||||||.||.|||||
BPUM_1495___y      1 ATGACGCTTGAAAAAACAACGAGAATGAACTACTTGTTTGACTTCTATCA     50

BSNT_02612___     51 GTCGTTGTTGACGTCAAAACAGAAGAGCTATATGTCGCTTTATTATTTGG    100
                     .||||||||.||..||||.||.||||||||.|||||||||||.||..|.|
BPUM_1495___y     51 ATCGTTGTTAACCGCAAAGCAAAAGAGCTACATGTCGCTTTACTACCTAG    100

BSNT_02612___    101 ACGATTTCTCCCTAGGCGAAATAGCCGAAGAATATGAGGTTTCAAGACAA    150
                     |||||||.|||||.||.|||||.||.||.||||||||.||.||||||||.
BPUM_1495___y    101 ACGATTTTTCCCTCGGTGAAATTGCGGATGAATATGAAGTATCAAGACAG    150

BSNT_02612___    151 GCTGTTTATGATAACATCAAACGAACAGAAGCAATGCTTGAACAATATGA    200
                     ||||||||||||||.||.|||||.||.|||||.|||||||||||||||||
BPUM_1495___y    151 GCTGTTTATGATAATATTAAACGGACTGAAGCGATGCTTGAACAATATGA    200

BSNT_02612___    201 AGAAAAGCTGCTCCTTTTGAAAAAGTTTCAGGAGCGTAAAGAGATGTTTA    250
                     |||||||||||||.|.||.||.||.|||.|.|||||||||||..|..|.|
BPUM_1495___y    201 AGAAAAGCTGCTCTTGTTTAAGAAATTTAAAGAGCGTAAAGAACTTCTCA    250

BSNT_02612___    251 ATAAGCTGAAGGAGCT------TGCTTCCGGTTCA-AAAGAAGAGGAAGA    293
                     |.||..|||..|||||      .|.|||| |.||| |..|||||.|.|||
BPUM_1495___y    251 AAAAAATGAGAGAGCTCGTAGCAGATTCC-GCTCAGACGGAAGAAGCAGA    299

BSNT_02612___    294 AATTACAGCTCTGATTGAAGCGCTTGAGAAATTAGATTAG    333
                           ||||.|.||||||.||||||||||||||||||||
BPUM_1495___y    300 ------AGCTTTAATTGAATCGCTTGAGAAATTAGATTAG    333


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