Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02602 and BPUM_1486
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:10
# Commandline: needle
# -asequence dna-align/BSNT_02602___recG.1.24716.seq
# -bsequence dna-align/BPUM_1486___recG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02602___recG-BPUM_1486___recG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02602___recG-BPUM_1486___recG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02602___recG
# 2: BPUM_1486___recG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2126
# Identity: 1521/2126 (71.5%)
# Similarity: 1521/2126 (71.5%)
# Gaps: 154/2126 ( 7.2%)
# Score: 5182.5
#
#
#=======================================
BSNT_02602___ 1 GTGAAACAACATCAGCAAACTA--GTATAGCTAA--CATTAAGGGTATTG 46
||||.|||..|.|.||||..|| || ||.| |.|.|||||.||||
BPUM_1486___r 1 GTGATACAGAAACTGCAAGATAACGT----CTCAGTCCTCAAGGGGATTG 46
BSNT_02602___ 47 GGCCGGAAACAGAAAAAACATTACACGAACTCGGTATTTATGACA-TTTC 95
|....|||||.|||||||||.|..|.|||||.||.||..| .||| |..|
BPUM_1486___r 47 GAGAAGAAACCGAAAAAACACTCAATGAACTTGGGATCCA-CACAGTAGC 95
BSNT_02602___ 96 TGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGG 145
.|||.|.||....||.||.||||||||.|||||.|||||.|||||..|..
BPUM_1486___r 96 CGATTTACTTGGCTACTTTCCTTATCGATATGACGACTATGAGCTTCGTA 145
BSNT_02602___ 146 ATTTAGAAGAAGTAAAGCATGATGAAAGAGTCACAGTTGAAGGGAAGGTT 195
|.||||||||||||||||||||.|||.|.||||||||||||||.||.||.
BPUM_1486___r 146 ACTTAGAAGAAGTAAAGCATGACGAACGTGTCACAGTTGAAGGAAAAGTG 195
BSNT_02602___ 196 CATTCA--GAGCC--TTCTCTTACCTATTACGGAAAAAAACGAAACAGGC 241
|| || ||||| |.||| ||||||||.|||||||||||||.|||||
BPUM_1486___r 196 CA--CAGTGAGCCCGTCCTC--ACCTATTATGGAAAAAAACGAAGCAGGC 241
BSNT_02602___ 242 TGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTT 291
|||||||||||||.||.|||||.|..|...|.||.|||||..|.|||||.
BPUM_1486___r 242 TGACATTCAGGCTGCTTGTCGGGCGTTTCCTCATCACAGCAATTTGTTTC 291
BSNT_02602___ 292 AACCGGCCTTATTTGAAGAAGCAGCTTTCGCTCGGCTCTGT--GGTG--A 337
||.||.|||||||| ||.|||.|||.| |.||| |||| |
BPUM_1486___r 292 AATCGCCCTTATTT-AAAAAGAAGCCT---------TGTGTTAGGTGATA 331
BSNT_02602___ 338 CGGTTT------CAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTT 381
||||.| |.||.||||||||.||..||||.|||.|.|||...||.
BPUM_1486___r 332 CGGTATCCGTCACTGGGAAATGGGATAAAAACCGTCAATCGATCATGGTG 381
BSNT_02602___ 382 CAGGAGTTGAAAAACGGGCCGC---ATCAAGAAGACAAAAGCATTGAACC 428
|||||.||.|||||.|||.||| |.|||||.|.| ||.||.||..|
BPUM_1486___r 382 CAGGAATTTAAAAAAGGGACGCACGAGCAAGATGGC---AGTATAGAGTC 428
BSNT_02602___ 429 AGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGGTTTA 478
.||.|||||.||.|||||||||||.|||||.||.|||||||||||.|||.
BPUM_1486___r 429 TGTTTATTCAGTCAAAGAAAATGTAACCGTGAAGATGATGAGGCGTTTTG 478
BSNT_02602___ 479 TTCAGCAGGCGCTGACCCAATATGCAGA-----CTCACTTCCTGATCCTC 523
|..|.||.||..||.|.|..||||.||| ||.| .||||..|
BPUM_1486___r 479 TCAAACAAGCCTTGTCACTTTATGTAGATAAAGCTGA-----AGATCAAC 523
BSNT_02602___ 524 TTCCGGAAAAGCTAAGAAAAAG-----------CTATAAACTGCCTG-AC 561
|.|| ||||| || ||||||||| |.|| .|
BPUM_1486___r 524 TGCC---AAAGC--------AGCTTGTCTCTACCTATAAACT-CATGTCC 561
BSNT_02602___ 562 TATTATCAAGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATT 611
|||.|..||||.||||||.|.||.||||.|||.||||||||.||..||.|
BPUM_1486___r 562 TATCAAGAAGCATTAAAAACCATTCACCTGCCAGAAACAAGAGACTCACT 611
BSNT_02602___ 612 AAAGCTTGCCAGACGGCGGTTTGTTTATGAAGAATTT-TTGTTGTTTCAG 660
.||||..||.|||||.||.|||||.||.||.|||||| ||.|| ||.|||
BPUM_1486___r 612 CAAGCAAGCAAGACGACGCTTTGTGTACGAGGAATTTCTTATT-TTCCAG 660
BSNT_02602___ 661 TTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGA--GAGCAGACACA--AG 706
.||||.||||||||..||.|||| |||||| |||.|.|.||| .|
BPUM_1486___r 661 CTGAAGATGCAGGCCATCAGAAA----GAAAGAACGAGAAAAAACATCGG 706
BSNT_02602___ 707 GGATACGGCAGCGTTTTTCAAACGAAGAAC---TCATGAGATTTATCAAA 753
|.||.|.|||.|..|||||.||.||.| | |..|||| |||.|..|.
BPUM_1486___r 707 GCATCCAGCATCCGTTTTCTAAAGAGG--CTGTTTTTGAG-TTTGTTCAC 753
BSNT_02602___ 754 AGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGAAAT 803
|||||.||.|||||.||.|||||.||.||.|||.|.||.|||...|||||
BPUM_1486___r 754 AGCCTGCCATTTCCGCTGACAAAGGCACAATCAAGAGTGCTTGATGAAAT 803
BSNT_02602___ 804 AACAGCAGACATGTCTTCTCCATACAGAATGAACCGTCTTCTTCAAGGGG 853
.|...|.||.|||.|.||.||||||.|.||||||||.||.||||||||||
BPUM_1486___r 804 TATGTCTGATATGGCGTCCCCATACCGGATGAACCGACTGCTTCAAGGGG 853
BSNT_02602___ 854 ACGTTGGATCAGGAAAAACGGCAGTCGCCGCCATTGCACTGTATGCCGCG 903
|.||.||.|||||.|||||.||.||.||.||.||||||||.||||||||
BPUM_1486___r 854 ATGTAGGCTCAGGGAAAACAGCTGTTGCAGCAATTGCACTATATGCCGC- 902
BSNT_02602___ 904 ATC--CTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTG 951
|| .||||.||.||.|||||.||..|.|||||.||.|||||.|||.||
BPUM_1486___r 903 -TCATTTATCTGGCTATCAAGGTGCATTAATGGTTCCAACAGAGATTTTG 951
BSNT_02602___ 952 GCCGAGCAGCATGCTGATTCGCTCGTT-TC-GCTATTTGAAAAAT-GGGA 998
||.|||||||||||||||||.|| || || |.|.|||||||||| ||||
BPUM_1486___r 952 GCAGAGCAGCATGCTGATTCCCT--TTATCAGTTGTTTGAAAAATGGGGA 999
BSNT_02602___ 999 CGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGG-AAGCGGCGAAAA 1047
| |||...|.|||||..|.|||||||||| ||||||| |||||.||.|.|
BPUM_1486___r 1000 C-TCAATATCGCTCTACTAACAAGCTCTG-TAAAGGGAAAGCGCCGCAGA 1047
BSNT_02602___ 1048 GAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAAC 1097
|||.||||.||.|||||....|.|||.||||||||||||.|.||.|||||
BPUM_1486___r 1048 GAATTGCTGGAACGTCTAAAAGAGGGCGAGATTGATATTTTAGTCGGAAC 1097
BSNT_02602___ 1098 CCACGCTTTAATCCAAGACGAGGTGGAGTTTAAGGCGCTGAGTCTCGTTA 1147
.||.||..|.||.||||||||.||.||.|||.||..|||..|||||||.|
BPUM_1486___r 1098 GCATGCGCTCATTCAAGACGAAGTCGAATTTCAGCAGCTTGGTCTCGTAA 1147
BSNT_02602___ 1148 TTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGG 1197
||||.|||||.||||||.|.|||||.||.|||||.||.|||||.||..|.
BPUM_1486___r 1148 TTACAGATGAGCAGCACCGGTTTGGCGTAGAGCAACGTAAAAAACTAAGA 1197
BSNT_02602___ 1198 AACAAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCC 1247
|..|||||.|||||.||.|||||..|.||.|||||.||.||.||.||.||
BPUM_1486___r 1198 AGTAAAGGACAGGACCCAGATGTCTTGTTCATGACGGCAACCCCTATTCC 1247
BSNT_02602___ 1248 AAGAACGTTAGCGATCACAGTGTTCGGTGAAATGGATGTATCTGTCATCG 1297
..|.||..|.||||||||.||.||.||.||||||||.|||||.|||||.|
BPUM_1486___r 1248 GCGCACACTTGCGATCACTGTTTTTGGAGAAATGGACGTATCCGTCATTG 1297
BSNT_02602___ 1298 ATGAGAT-----GCCGGCTGGACGAAAGAGAATCGAAACCTATTGGGTAA 1342
|||| || |||||| |..|||.|| ||||||||.||||||||.|
BPUM_1486___r 1298 ATGA-ATTACCAGCCGGC---AGAAAACAG-ATCGAAACGTATTGGGTCA 1342
BSNT_02602___ 1343 AACATGACATGCTGGATCGTATATTGGCATTTGTCGAAAAAGAATTAAAG 1392
|.|||||||||||.||..|.||..|.||||||||.||.|||||..|.||.
BPUM_1486___r 1343 AGCATGACATGCTTGAGAGGATTCTTGCATTTGTAGATAAAGAGCTGAAA 1392
BSNT_02602___ 1393 CAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGACAA 1442
.||||.||.|||||.||.||.||.||||||||.||.||||||||||||||
BPUM_1486___r 1393 AAAGGAAGACAGGCATACATTATTTGTCCGCTCATAGAAGAATCAGACAA 1442
BSNT_02602___ 1443 GCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTG----AT 1488
.||.|||||||||||.||.|||||.||..|||..|||||..|.| ||
BPUM_1486___r 1443 ACTCGATGTGCAAAATGCGATTGATGTCCACAGCATGCTGACAGAGGCAT 1492
BSNT_02602___ 1489 ATTTTTCGGGGAAAATGGAATGTCGGCCTTATGCATGGAAAGCT-GC-AT 1536
| .||.||.||.|||....|||||.|.|||||.||.||.|| || |.
BPUM_1486___r 1493 A----CCGCGGTAAGTGGTCGATCGGCTTAATGCACGGGAAACTCGCGAG 1538
BSNT_02602___ 1537 TCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGT-C 1585
| |||||||||||.|||||.||||||||.||.|..||||||.| .|| |
BPUM_1486___r 1539 T--GATGAAAAAGATCAGGTGATGAGAGACTTTACAGCAAATGA-AGTGC 1585
BSNT_02602___ 1586 AAATTCTCGTATCAACCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAAT 1635
|||||||.||.|||||.||.||.||.||.||.||.||.||.||.||.|||
BPUM_1486___r 1586 AAATTCTTGTTTCAACAACAGTCGTTGAAGTGGGTGTCAACGTACCCAAT 1635
BSNT_02602___ 1636 GCAACAATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCACAGCT 1685
||.||.||.|||||.|||||.||.||.|||||.|||||.||.||.|||||
BPUM_1486___r 1636 GCGACCATCATGGTCATTTACGATGCAGACCGCTTCGGGCTGTCTCAGCT 1685
BSNT_02602___ 1686 TCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTA 1735
|||.|||||..|.|||||.||||||||.||.|||||||||||.||.||||
BPUM_1486___r 1686 TCATCAGCTCAGAGGCCGAGTTGGACGAGGAGAGCATCAATCATTTTGTA 1735
BSNT_02602___ 1736 TTCTGATGGCTGATCCAAAATCAGAAACAGGGAAAGAACGGATGAGGATC 1785
||.|.|||||.|||||||||||||||||.||.|||||.|||||||||||.
BPUM_1486___r 1736 TTTTAATGGCGGATCCAAAATCAGAAACCGGAAAAGAGCGGATGAGGATT 1785
BSNT_02602___ 1786 ATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACT 1835
|||||.||.||.|..|||||.||.|||.|||||||||||||..|.||.||
BPUM_1486___r 1786 ATGTCTGAAACGACCGACGGCTTTGAGTTGTCTGAAAAGGACTTAGAGCT 1835
BSNT_02602___ 1836 GAGAGGTCCCGGTGATTTCTTCGGGAAAAAACAAAGCGGAATGCCGGAAT 1885
.|||||.|||||.|||||||||||.||||||||||||||||||||.||||
BPUM_1486___r 1836 AAGAGGACCCGGCGATTTCTTCGGTAAAAAACAAAGCGGAATGCCTGAAT 1885
BSNT_02602___ 1886 TTAAAGTGGCGGACATGGTTCATGATTACAGAGCGCTTGAAACGGCAAGG 1935
|||||||.||.||.|||||||||||.||||||||.||.|||||.||.||.
BPUM_1486___r 1886 TTAAAGTAGCCGATATGGTTCATGACTACAGAGCACTGGAAACTGCTAGA 1935
BSNT_02602___ 1936 CAGGATGCTGC-GAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGG 1984
.|.|||||.|| ||| ||||||...||.||.||.||.||||..||.||||
BPUM_1486___r 1936 AAAGATGCGGCAGAA-CTTGTGCAGTCAGATGCATTTTGGACAGATCCGG 1984
BSNT_02602___ 1985 AATACGCTGTGTTAAGAGATGAATT--------GCTG---AAGAGCGGAG 2023
|||| |.|||| |.|| |||| .|.|||||.|
BPUM_1486___r 1985 AATA-------TAAAGA----ACTTCGGCAAACGCTGGTAGACAGCGGGG 2023
BSNT_02602___ 2024 TAATGGACGGGGAAAAATTAAGCTGA 2049
|..|||.|||.||.||||||||||||
BPUM_1486___r 2024 TGCTGGGCGGAGATAAATTAAGCTGA 2049
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