Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02590 and BPUM_1476

See Amino acid alignment / Visit BSNT_02590 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_02590___prkC.1.24716.seq
#    -bsequence dna-align/BPUM_1476___prkC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02590___prkC-BPUM_1476___prkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02590___prkC-BPUM_1476___prkC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02590___prkC
# 2: BPUM_1476___prkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2014
# Identity:    1417/2014 (70.4%)
# Similarity:  1417/2014 (70.4%)
# Gaps:         125/2014 ( 6.2%)
# Score: 4688.0
# 
#
#=======================================

BSNT_02590___      1 GTGCTAATCGGCAAGCGGATCAGCGGGCGTTACCAAATTCTCCGCGTTAT     50
                     |||.|.|||||.||..||||||||||.|||||.||.|||||.|||||.||
BPUM_1476___p      1 GTGTTGATCGGAAAAAGGATCAGCGGCCGTTATCAGATTCTTCGCGTCAT     50

BSNT_02590___     51 AGGCGGCGGGGGAATGGCCAACGTGTATTTAGCTGAGGATATCATTCTAG    100
                     ||||||.||.||||||||.|||||.|||||.||.||||||||.|||.|||
BPUM_1476___p     51 AGGCGGAGGCGGAATGGCAAACGTCTATTTGGCGGAGGATATGATTTTAG    100

BSNT_02590___    101 ACCGTGAAGTCGCAATTAAAATCCTGCGGTTTGACTATGCAAATGACAAT    150
                     |.||.|||||.||.||||||||..||||||||||||.|||||..||..||
BPUM_1476___p    101 ATCGCGAAGTAGCGATTAAAATTTTGCGGTTTGACTTTGCAAGCGATGAT    150

BSNT_02590___    151 GAATTTATCAGACGTTTCCGCAGAGAAGCCCAATCCGCATCAAGCCTCGA    200
                     ||.|||||.|||||||||||.||.|||||.||.||.||..|||||.|.||
BPUM_1476___p    151 GATTTTATTAGACGTTTCCGAAGGGAAGCGCAGTCAGCTGCAAGCTTAGA    200

BSNT_02590___    201 TCACCCGAATATTGTCAGCATTTACGATTTGGGCGAGGAAGATGATATTT    250
                     |||..||||||||||||||||.||||||.|.||.||.||||||||.||||
BPUM_1476___p    201 TCATTCGAATATTGTCAGCATCTACGATGTCGGGGAAGAAGATGACATTT    250

BSNT_02590___    251 ATTATATTGTCATGGAATACGTTGAAGGCATGACGCTTAAAGAATACATA    300
                     |||||||||||||||||||.||.||.||.||||||||.||||||||||| 
BPUM_1476___p    251 ATTATATTGTCATGGAATATGTCGACGGGATGACGCTGAAAGAATACAT-    299

BSNT_02590___    301 ACA-GCAAATGGGCCACTTCACCCTAAAGAAGCGCTGAACATCATGGAGC    349
                     ||| ||.|||||.||.|||||.||.||||||||..|...|||.|||||||
BPUM_1476___p    300 ACACGCCAATGGCCCGCTTCATCCGAAAGAAGCCGTTCGCATTATGGAGC    349

BSNT_02590___    350 AAATAGTCTCAGCCATCGCTCATGCCCAT-CAAAACCAGATTGTTCACAG    398
                     ||.|.||..|.||.||.|...|.|||||| |.||| |||.|.||.|||.|
BPUM_1476___p    350 AAGTTGTTGCGGCGATGGAAGAAGCCCATGCGAAA-CAGCTCGTCCACCG    398

BSNT_02590___    399 AGACATCAAGCCGCATAACATTTTGATTGATCATATGGGAAATATCAAAG    448
                     .|||||.|||||.||.||.||.||.||.||..|||||||.||.|||||||
BPUM_1476___p    399 TGACATTAAGCCTCACAATATATTAATAGACAATATGGGGAACATCAAAG    448

BSNT_02590___    449 TAACGGATTTTGGAATTGCGACGGCACTAAGTTCGACCACAATCACCCAT    498
                     |.||.||||||||.|||||.|.||||||.||.||..|.||.||.||||||
BPUM_1476___p    449 TCACTGATTTTGGGATTGCCATGGCACTCAGCTCAGCAACCATTACCCAT    498

BSNT_02590___    499 ACCAATTCAGTTCTGGGCTCGGTCCATTACTTATCACCTGAACAGGCCCG    548
                     ||.|||||.||.||.|||||.|||||.||.||.||.||.|||||.||.||
BPUM_1476___p    499 ACAAATTCTGTCCTAGGCTCCGTCCACTATTTGTCTCCAGAACAAGCACG    548

BSNT_02590___    549 GGGCGGCTTAGCCACAAAGAAATCGGATATTTATGCGCTTGGAATCGTTC    598
                     .||.||..|.||.|||||.||.||.||.||.|||.|||||||.||.||.|
BPUM_1476___p    549 CGGAGGACTGGCAACAAAAAAGTCAGACATCTATTCGCTTGGGATTGTGC    598

BSNT_02590___    599 TATTTGAGCTTTTAACCGGCCGTATTCCGTTTGATGGAGAGTCAGCAGTC    648
                     |.|.|||.||..|..|.||.||.||.||.|||||.||.||.||.||.||.
BPUM_1476___p    599 TCTATGAACTCATCTCAGGACGCATGCCATTTGAAGGGGAATCGGCTGTT    648

BSNT_02590___    649 AGCATCGCCTTGAAGCATCTTCAAGCGGAAACTCCTTCGGCAAAAAGGTG    698
                     ||..|.||..||||||||.|.|||.|.||..|.||.||.|..|.||||||
BPUM_1476___p    649 AGTGTTGCACTGAAGCATTTACAATCAGAGCCGCCATCTGTGAGAAGGTG    698

BSNT_02590___    699 GAATCCATCGGTCCCCCAAAGCGTTGAAAACATCATACTCAAGGCAACTG    748
                     ||||||.||.||.||.|||||.||.|||||||||||..|.||.||.|..|
BPUM_1476___p    699 GAATCCTTCTGTTCCACAAAGTGTGGAAAACATCATTTTAAAAGCGATGG    748

BSNT_02590___    749 CCAAAGATCCTTTTCATCGCTACGAAACGGCTGAA---GACATGGAAGCA    795
                     ||||||||||.|||.||||.||.|||   |.||.|   ||.|||.||...
BPUM_1476___p    749 CCAAAGATCCATTTTATCGATATGAA---GATGCATCTGAAATGCAAAAG    795

BSNT_02590___    796 GACATAAAAACAGCTTTTGATGCCGACAGACTCAATGAAAAGAGATTTAC    845
                     |||.|||||||.|||||.|||.|.|.||||.|.|..|||||..|.|||..
BPUM_1476___p    796 GACTTAAAAACCGCTTTCGATCCAGCCAGATTAAGAGAAAAACGCTTTGT    845

BSNT_02590___    846 GATTCAAGAAG---ATGAAGAAATGACAAAAGCGATACCTATCATTAAAG    892
                     .|||.||||||   ||||||.|   ||.||||||||.||.||||||.|||
BPUM_1476___p    846 TATTGAAGAAGACCATGAAGCA---ACGAAAGCGATCCCAATCATTCAAG    892

BSNT_02590___    893 ATGA--AGAACTCGCTAAAGCTGCTGGCGAAAAAGAAGCTG---------    931
                     ||.|  |||  |||.|.|||....|   ||||||..|||.|         
BPUM_1476___p    893 ATCATCAGA--TCGATCAAGACAAT---GAAAAAACAGCCGTCCACCCGG    937

BSNT_02590___    932 ----AAGTGACAACCGCACAAGAAAACAAAACAAAGAAGAACGGTAAAA-    976
                         ||     |||||   ||||||| ||.|.|||.||.|||.|.|||| 
BPUM_1476___p    938 CTCAAA-----AACCG---AAGAAAA-AAGAGAAACAAAAACCGAAAAAG    978

BSNT_02590___    977 ----GAAAAAAGTGGCCGTGGGTT-TTGCTCACGATATGCCTCGTTTTTA   1021
                         |||||||.|||||.|||.|| |.||       ||.|.||.|.||||
BPUM_1476___p    979 AAACGAAAAAAATGGCCATGGATTGTGGC-------ATCCATCTTATTTA   1021

BSNT_02590___   1022 ---TCACAGCTG---GAATTCTTGCTGTCACTGTTTTTCC---GTCGCTT   1062
                        |.|..||||   .||||.|.||..|||||||.|||||   |..||||
BPUM_1476___p   1022 TGTTGATTGCTGCGACAATTTTAGCCATCACTGTGTTTCCAGGGATGCTT   1071

BSNT_02590___   1063 TTCATGCCTAAGGATGTCAAAATACCTGATGTCTCCGGAATGGAATAC--   1110
                     |   |.||.||.|||||..||.|..|.||.||.||.||.|||    ||  
BPUM_1476___p   1072 T---TTCCAAAAGATGTGGAAGTCACAGACGTATCTGGCATG----ACGG   1114

BSNT_02590___   1111 --GAAAAAGCCGCAG-GGCTCTTGGAAAAAGAA-----GGTTTACAGGTT   1152
                       ||||||||.|.|| .|| |||    ||||||     ||||||| .||.
BPUM_1476___p   1115 TTGAAAAAGCAGAAGATGC-CTT----AAAGAAAGCTGGGTTTAC-CGTC   1158

BSNT_02590___   1153 GATTCCGAGTTGTTGGAAATCTCAGATGAAAAAATTGAAGAGGGCCTGAT   1202
                     |.|||.||||...|.||.|||.|.|||||.|||||||||.|.||.||..|
BPUM_1476___p   1159 GCTTCGGAGTCAATAGAGATCGCTGATGAGAAAATTGAAAAAGGTCTCGT   1208

BSNT_02590___   1203 GGTAAAAACGGATCC-TAAAGCGGATACCACAGTCAAAGAAGGCGCCACG   1251
                     .||.|||||.||.|| .|||.||| |||.|..|||||||||||   .||.
BPUM_1476___p   1209 CGTCAAAACAGACCCGAAAATCGG-TACAAAGGTCAAAGAAGG---AACA   1254

BSNT_02590___   1252 G----TCACCCTTTATAAGAGCACCGGAAAAGCAAAAACGGAGATCGGTG   1297
                     |    ||| .|||||..|.||.||.||.||.|.|||.||.||..|...||
BPUM_1476___p   1255 GAGATTCA-GCTTTACGAAAGTACTGGCAAGGAAAAGACCGAATTACCTG   1303

BSNT_02590___   1298 ATGTGACAGGCCAAACGGTCGACCAGGCAAAAAAAGCGTTGAAGGACCAA   1347
                     ||||||||||..|||.||||||..|.||||||.||...||..||.|..||
BPUM_1476___p   1304 ATGTGACAGGTGAAAAGGTCGATAAAGCAAAAGAAATATTAGAGAAAAAA   1353

BSNT_02590___   1348 GGGTTTAAACATGTAACAGTAAATGAAGTGAATGACGA-GAAA---AATG   1393
                     |||||||||||.||....||..|.|||||||||||..| ||.|   ||| 
BPUM_1476___p   1354 GGGTTTAAACAGGTCGTTGTGGAGGAAGTGAATGATAATGACACCGAAT-   1402

BSNT_02590___   1394 CGGGCACTGTCATTGACCAAAATCCTTCAGCAGGGACTGAGCTTGTCCCG   1443
                     |.||.|.||||||.||.||.|.|||||||||....||.||.|||||..| 
BPUM_1476___p   1403 CTGGAATTGTCATGGAACAGAGTCCTTCAGCGAATACGGAACTTGTAGC-   1451

BSNT_02590___   1444 AG----TGAAGA--TCAAGTCAAACTTACAGTCAGTATCGGACCCGAAGA   1487
                     ||    ||||||  |||.||     |.||.|||||.||.||.||.|..||
BPUM_1476___p   1452 AGCAGATGAAGAGGTCACGT-----TGACTGTCAGCATAGGTCCTGCCGA   1496

BSNT_02590___   1488 CATTACGCTTA-GAGACTTGAAAACCTATAGTAAAGAAGCAGCGTCTGGA   1536
                     .||||| .||| |.||.||.|..||.||||||||..||||.||.||  ||
BPUM_1476___p   1497 TATTAC-ATTACGTGATTTAACGACGTATAGTAAGCAAGCGGCATC--GA   1543

BSNT_02590___   1537 --TATCTGGAAGACAACGGATTGAAGCTTGTAGAAAAAGAAGCATACTCA   1584
                       |||.|.||.||.|||||.||.|||||||..|||||||||||.||.||.
BPUM_1476___p   1544 ATTATTTAGAGGATAACGGCTTAAAGCTTGATGAAAAAGAAGCGTATTCT   1593

BSNT_02590___   1585 GATGATGTTCCAGAAGGACAGGTTGTCAAACAAAAACCAGCAGCAGGTAC   1634
                     ||||||||.|||.||||..||||..|.||.||..||||||.||||||.||
BPUM_1476___p   1594 GATGATGTGCCAAAAGGCGAGGTCATGAAGCAGGAACCAGGAGCAGGAAC   1643

BSNT_02590___   1635 GGCAGTAAAGCCGGGAAACGAAGTTGAAG-TGACATTCTCTCTCGGACCA   1683
                     |||.||.||.||.||..|| |.|.|.||| |.|||||||||||.|||||.
BPUM_1476___p   1644 GGCTGTTAAACCAGGTGAC-ACGGTCAAGATTACATTCTCTCTTGGACCG   1692

BSNT_02590___   1684 GAGAAAAAACCTGCGAAAACAGTGAAAGAAAAGGTCAAGATCCCCTACGA   1733
                     .||.|||||||.||.|||||.||||..||||||.|...||||||.||.||
BPUM_1476___p   1693 AAGGAAAAACCAGCCAAAACGGTGACTGAAAAGATTTCGATCCCTTATGA   1742

BSNT_02590___   1734 ACCAGAAAATGAAGGGGACGAGCTTCAAGTGCAAATCGCGGTTGACGATG   1783
                     |||||||...||||||.|.|||.|..|.||.|||||..|..||||.||||
BPUM_1476___p   1743 ACCAGAAGCGGAAGGGCAGGAGATGAATGTCCAAATTTCCATTGATGATG   1792

BSNT_02590___   1784 CGGATCACAGCATCTCTGACACTTACGAAGAATTTAAGATAAAAGAGCCG   1833
                     |.||.||.|||||||||||..|.||||||...|||||.||.|..|.||||
BPUM_1476___p   1793 CCGAGCATAGCATCTCTGATTCGTACGAAAGCTTTAAAATCACTGCGCCG   1842

BSNT_02590___   1834 ACTGAACGAACGATCGAACTAAAGATTGAACCCGGCCAAAAAGGGTACTA   1883
                     ||||||||.||.||..||.|.|||||||||||.||.||||||||.||.||
BPUM_1476___p   1843 ACTGAACGGACCATTAAATTTAAGATTGAACCAGGTCAAAAAGGATATTA   1892

BSNT_02590___   1884 TCAAGTAATGGTAAACAATAAAGTTGTCAGCTACAAAACCATTGAGTATC   1933
                     ||||||.|.|||..|..|||||||.|||||||..|||||.||.||.||.|
BPUM_1476___p   1893 TCAAGTGACGGTTGATGATAAAGTCGTCAGCTCGAAAACGATCGAATACC   1942

BSNT_02590___   1934 CGAAAGATGAATAA   1947
                     |..|.|||||||||
BPUM_1476___p   1943 CTGATGATGAATAA   1956


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