Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02590 and BPUM_1476
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_02590___prkC.1.24716.seq
# -bsequence dna-align/BPUM_1476___prkC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02590___prkC-BPUM_1476___prkC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02590___prkC-BPUM_1476___prkC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02590___prkC
# 2: BPUM_1476___prkC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2014
# Identity: 1417/2014 (70.4%)
# Similarity: 1417/2014 (70.4%)
# Gaps: 125/2014 ( 6.2%)
# Score: 4688.0
#
#
#=======================================
BSNT_02590___ 1 GTGCTAATCGGCAAGCGGATCAGCGGGCGTTACCAAATTCTCCGCGTTAT 50
|||.|.|||||.||..||||||||||.|||||.||.|||||.|||||.||
BPUM_1476___p 1 GTGTTGATCGGAAAAAGGATCAGCGGCCGTTATCAGATTCTTCGCGTCAT 50
BSNT_02590___ 51 AGGCGGCGGGGGAATGGCCAACGTGTATTTAGCTGAGGATATCATTCTAG 100
||||||.||.||||||||.|||||.|||||.||.||||||||.|||.|||
BPUM_1476___p 51 AGGCGGAGGCGGAATGGCAAACGTCTATTTGGCGGAGGATATGATTTTAG 100
BSNT_02590___ 101 ACCGTGAAGTCGCAATTAAAATCCTGCGGTTTGACTATGCAAATGACAAT 150
|.||.|||||.||.||||||||..||||||||||||.|||||..||..||
BPUM_1476___p 101 ATCGCGAAGTAGCGATTAAAATTTTGCGGTTTGACTTTGCAAGCGATGAT 150
BSNT_02590___ 151 GAATTTATCAGACGTTTCCGCAGAGAAGCCCAATCCGCATCAAGCCTCGA 200
||.|||||.|||||||||||.||.|||||.||.||.||..|||||.|.||
BPUM_1476___p 151 GATTTTATTAGACGTTTCCGAAGGGAAGCGCAGTCAGCTGCAAGCTTAGA 200
BSNT_02590___ 201 TCACCCGAATATTGTCAGCATTTACGATTTGGGCGAGGAAGATGATATTT 250
|||..||||||||||||||||.||||||.|.||.||.||||||||.||||
BPUM_1476___p 201 TCATTCGAATATTGTCAGCATCTACGATGTCGGGGAAGAAGATGACATTT 250
BSNT_02590___ 251 ATTATATTGTCATGGAATACGTTGAAGGCATGACGCTTAAAGAATACATA 300
|||||||||||||||||||.||.||.||.||||||||.|||||||||||
BPUM_1476___p 251 ATTATATTGTCATGGAATATGTCGACGGGATGACGCTGAAAGAATACAT- 299
BSNT_02590___ 301 ACA-GCAAATGGGCCACTTCACCCTAAAGAAGCGCTGAACATCATGGAGC 349
||| ||.|||||.||.|||||.||.||||||||..|...|||.|||||||
BPUM_1476___p 300 ACACGCCAATGGCCCGCTTCATCCGAAAGAAGCCGTTCGCATTATGGAGC 349
BSNT_02590___ 350 AAATAGTCTCAGCCATCGCTCATGCCCAT-CAAAACCAGATTGTTCACAG 398
||.|.||..|.||.||.|...|.|||||| |.||| |||.|.||.|||.|
BPUM_1476___p 350 AAGTTGTTGCGGCGATGGAAGAAGCCCATGCGAAA-CAGCTCGTCCACCG 398
BSNT_02590___ 399 AGACATCAAGCCGCATAACATTTTGATTGATCATATGGGAAATATCAAAG 448
.|||||.|||||.||.||.||.||.||.||..|||||||.||.|||||||
BPUM_1476___p 399 TGACATTAAGCCTCACAATATATTAATAGACAATATGGGGAACATCAAAG 448
BSNT_02590___ 449 TAACGGATTTTGGAATTGCGACGGCACTAAGTTCGACCACAATCACCCAT 498
|.||.||||||||.|||||.|.||||||.||.||..|.||.||.||||||
BPUM_1476___p 449 TCACTGATTTTGGGATTGCCATGGCACTCAGCTCAGCAACCATTACCCAT 498
BSNT_02590___ 499 ACCAATTCAGTTCTGGGCTCGGTCCATTACTTATCACCTGAACAGGCCCG 548
||.|||||.||.||.|||||.|||||.||.||.||.||.|||||.||.||
BPUM_1476___p 499 ACAAATTCTGTCCTAGGCTCCGTCCACTATTTGTCTCCAGAACAAGCACG 548
BSNT_02590___ 549 GGGCGGCTTAGCCACAAAGAAATCGGATATTTATGCGCTTGGAATCGTTC 598
.||.||..|.||.|||||.||.||.||.||.|||.|||||||.||.||.|
BPUM_1476___p 549 CGGAGGACTGGCAACAAAAAAGTCAGACATCTATTCGCTTGGGATTGTGC 598
BSNT_02590___ 599 TATTTGAGCTTTTAACCGGCCGTATTCCGTTTGATGGAGAGTCAGCAGTC 648
|.|.|||.||..|..|.||.||.||.||.|||||.||.||.||.||.||.
BPUM_1476___p 599 TCTATGAACTCATCTCAGGACGCATGCCATTTGAAGGGGAATCGGCTGTT 648
BSNT_02590___ 649 AGCATCGCCTTGAAGCATCTTCAAGCGGAAACTCCTTCGGCAAAAAGGTG 698
||..|.||..||||||||.|.|||.|.||..|.||.||.|..|.||||||
BPUM_1476___p 649 AGTGTTGCACTGAAGCATTTACAATCAGAGCCGCCATCTGTGAGAAGGTG 698
BSNT_02590___ 699 GAATCCATCGGTCCCCCAAAGCGTTGAAAACATCATACTCAAGGCAACTG 748
||||||.||.||.||.|||||.||.|||||||||||..|.||.||.|..|
BPUM_1476___p 699 GAATCCTTCTGTTCCACAAAGTGTGGAAAACATCATTTTAAAAGCGATGG 748
BSNT_02590___ 749 CCAAAGATCCTTTTCATCGCTACGAAACGGCTGAA---GACATGGAAGCA 795
||||||||||.|||.||||.||.||| |.||.| ||.|||.||...
BPUM_1476___p 749 CCAAAGATCCATTTTATCGATATGAA---GATGCATCTGAAATGCAAAAG 795
BSNT_02590___ 796 GACATAAAAACAGCTTTTGATGCCGACAGACTCAATGAAAAGAGATTTAC 845
|||.|||||||.|||||.|||.|.|.||||.|.|..|||||..|.|||..
BPUM_1476___p 796 GACTTAAAAACCGCTTTCGATCCAGCCAGATTAAGAGAAAAACGCTTTGT 845
BSNT_02590___ 846 GATTCAAGAAG---ATGAAGAAATGACAAAAGCGATACCTATCATTAAAG 892
.|||.|||||| ||||||.| ||.||||||||.||.||||||.|||
BPUM_1476___p 846 TATTGAAGAAGACCATGAAGCA---ACGAAAGCGATCCCAATCATTCAAG 892
BSNT_02590___ 893 ATGA--AGAACTCGCTAAAGCTGCTGGCGAAAAAGAAGCTG--------- 931
||.| ||| |||.|.|||....| ||||||..|||.|
BPUM_1476___p 893 ATCATCAGA--TCGATCAAGACAAT---GAAAAAACAGCCGTCCACCCGG 937
BSNT_02590___ 932 ----AAGTGACAACCGCACAAGAAAACAAAACAAAGAAGAACGGTAAAA- 976
|| ||||| ||||||| ||.|.|||.||.|||.|.||||
BPUM_1476___p 938 CTCAAA-----AACCG---AAGAAAA-AAGAGAAACAAAAACCGAAAAAG 978
BSNT_02590___ 977 ----GAAAAAAGTGGCCGTGGGTT-TTGCTCACGATATGCCTCGTTTTTA 1021
|||||||.|||||.|||.|| |.|| ||.|.||.|.||||
BPUM_1476___p 979 AAACGAAAAAAATGGCCATGGATTGTGGC-------ATCCATCTTATTTA 1021
BSNT_02590___ 1022 ---TCACAGCTG---GAATTCTTGCTGTCACTGTTTTTCC---GTCGCTT 1062
|.|..|||| .||||.|.||..|||||||.||||| |..||||
BPUM_1476___p 1022 TGTTGATTGCTGCGACAATTTTAGCCATCACTGTGTTTCCAGGGATGCTT 1071
BSNT_02590___ 1063 TTCATGCCTAAGGATGTCAAAATACCTGATGTCTCCGGAATGGAATAC-- 1110
| |.||.||.|||||..||.|..|.||.||.||.||.||| ||
BPUM_1476___p 1072 T---TTCCAAAAGATGTGGAAGTCACAGACGTATCTGGCATG----ACGG 1114
BSNT_02590___ 1111 --GAAAAAGCCGCAG-GGCTCTTGGAAAAAGAA-----GGTTTACAGGTT 1152
||||||||.|.|| .|| ||| |||||| ||||||| .||.
BPUM_1476___p 1115 TTGAAAAAGCAGAAGATGC-CTT----AAAGAAAGCTGGGTTTAC-CGTC 1158
BSNT_02590___ 1153 GATTCCGAGTTGTTGGAAATCTCAGATGAAAAAATTGAAGAGGGCCTGAT 1202
|.|||.||||...|.||.|||.|.|||||.|||||||||.|.||.||..|
BPUM_1476___p 1159 GCTTCGGAGTCAATAGAGATCGCTGATGAGAAAATTGAAAAAGGTCTCGT 1208
BSNT_02590___ 1203 GGTAAAAACGGATCC-TAAAGCGGATACCACAGTCAAAGAAGGCGCCACG 1251
.||.|||||.||.|| .|||.||| |||.|..||||||||||| .||.
BPUM_1476___p 1209 CGTCAAAACAGACCCGAAAATCGG-TACAAAGGTCAAAGAAGG---AACA 1254
BSNT_02590___ 1252 G----TCACCCTTTATAAGAGCACCGGAAAAGCAAAAACGGAGATCGGTG 1297
| ||| .|||||..|.||.||.||.||.|.|||.||.||..|...||
BPUM_1476___p 1255 GAGATTCA-GCTTTACGAAAGTACTGGCAAGGAAAAGACCGAATTACCTG 1303
BSNT_02590___ 1298 ATGTGACAGGCCAAACGGTCGACCAGGCAAAAAAAGCGTTGAAGGACCAA 1347
||||||||||..|||.||||||..|.||||||.||...||..||.|..||
BPUM_1476___p 1304 ATGTGACAGGTGAAAAGGTCGATAAAGCAAAAGAAATATTAGAGAAAAAA 1353
BSNT_02590___ 1348 GGGTTTAAACATGTAACAGTAAATGAAGTGAATGACGA-GAAA---AATG 1393
|||||||||||.||....||..|.|||||||||||..| ||.| |||
BPUM_1476___p 1354 GGGTTTAAACAGGTCGTTGTGGAGGAAGTGAATGATAATGACACCGAAT- 1402
BSNT_02590___ 1394 CGGGCACTGTCATTGACCAAAATCCTTCAGCAGGGACTGAGCTTGTCCCG 1443
|.||.|.||||||.||.||.|.|||||||||....||.||.|||||..|
BPUM_1476___p 1403 CTGGAATTGTCATGGAACAGAGTCCTTCAGCGAATACGGAACTTGTAGC- 1451
BSNT_02590___ 1444 AG----TGAAGA--TCAAGTCAAACTTACAGTCAGTATCGGACCCGAAGA 1487
|| |||||| |||.|| |.||.|||||.||.||.||.|..||
BPUM_1476___p 1452 AGCAGATGAAGAGGTCACGT-----TGACTGTCAGCATAGGTCCTGCCGA 1496
BSNT_02590___ 1488 CATTACGCTTA-GAGACTTGAAAACCTATAGTAAAGAAGCAGCGTCTGGA 1536
.||||| .||| |.||.||.|..||.||||||||..||||.||.|| ||
BPUM_1476___p 1497 TATTAC-ATTACGTGATTTAACGACGTATAGTAAGCAAGCGGCATC--GA 1543
BSNT_02590___ 1537 --TATCTGGAAGACAACGGATTGAAGCTTGTAGAAAAAGAAGCATACTCA 1584
|||.|.||.||.|||||.||.|||||||..|||||||||||.||.||.
BPUM_1476___p 1544 ATTATTTAGAGGATAACGGCTTAAAGCTTGATGAAAAAGAAGCGTATTCT 1593
BSNT_02590___ 1585 GATGATGTTCCAGAAGGACAGGTTGTCAAACAAAAACCAGCAGCAGGTAC 1634
||||||||.|||.||||..||||..|.||.||..||||||.||||||.||
BPUM_1476___p 1594 GATGATGTGCCAAAAGGCGAGGTCATGAAGCAGGAACCAGGAGCAGGAAC 1643
BSNT_02590___ 1635 GGCAGTAAAGCCGGGAAACGAAGTTGAAG-TGACATTCTCTCTCGGACCA 1683
|||.||.||.||.||..|| |.|.|.||| |.|||||||||||.|||||.
BPUM_1476___p 1644 GGCTGTTAAACCAGGTGAC-ACGGTCAAGATTACATTCTCTCTTGGACCG 1692
BSNT_02590___ 1684 GAGAAAAAACCTGCGAAAACAGTGAAAGAAAAGGTCAAGATCCCCTACGA 1733
.||.|||||||.||.|||||.||||..||||||.|...||||||.||.||
BPUM_1476___p 1693 AAGGAAAAACCAGCCAAAACGGTGACTGAAAAGATTTCGATCCCTTATGA 1742
BSNT_02590___ 1734 ACCAGAAAATGAAGGGGACGAGCTTCAAGTGCAAATCGCGGTTGACGATG 1783
|||||||...||||||.|.|||.|..|.||.|||||..|..||||.||||
BPUM_1476___p 1743 ACCAGAAGCGGAAGGGCAGGAGATGAATGTCCAAATTTCCATTGATGATG 1792
BSNT_02590___ 1784 CGGATCACAGCATCTCTGACACTTACGAAGAATTTAAGATAAAAGAGCCG 1833
|.||.||.|||||||||||..|.||||||...|||||.||.|..|.||||
BPUM_1476___p 1793 CCGAGCATAGCATCTCTGATTCGTACGAAAGCTTTAAAATCACTGCGCCG 1842
BSNT_02590___ 1834 ACTGAACGAACGATCGAACTAAAGATTGAACCCGGCCAAAAAGGGTACTA 1883
||||||||.||.||..||.|.|||||||||||.||.||||||||.||.||
BPUM_1476___p 1843 ACTGAACGGACCATTAAATTTAAGATTGAACCAGGTCAAAAAGGATATTA 1892
BSNT_02590___ 1884 TCAAGTAATGGTAAACAATAAAGTTGTCAGCTACAAAACCATTGAGTATC 1933
||||||.|.|||..|..|||||||.|||||||..|||||.||.||.||.|
BPUM_1476___p 1893 TCAAGTGACGGTTGATGATAAAGTCGTCAGCTCGAAAACGATCGAATACC 1942
BSNT_02590___ 1934 CGAAAGATGAATAA 1947
|..|.|||||||||
BPUM_1476___p 1943 CTGATGATGAATAA 1956
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