Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02588 and BPUM_1474

See Amino acid alignment / Visit BSNT_02588 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_02588___yloN.1.24716.seq
#    -bsequence dna-align/BPUM_1474.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02588___yloN-BPUM_1474.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02588___yloN-BPUM_1474.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02588___yloN
# 2: BPUM_1474
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity:     858/1097 (78.2%)
# Similarity:   858/1097 (78.2%)
# Gaps:          19/1097 ( 1.7%)
# Score: 3305.5
# 
#
#=======================================

BSNT_02588___      1 ATGGCAGAACTTAATAAAACAAAAGTAAGAAAAGAATTGCGGACAGAGCG     50
                     |||.||||||         .||||||||||||||||.||...|||||...
BPUM_1474          1 ATGACAGAAC---------AAAAAGTAAGAAAAGAACTGAAAACAGATAT     41

BSNT_02588___     51 TCCGTCGATTTATTCTTTTGAATTAGACGAAATTAAACAATGGCTGACAG    100
                     .||.|||||||||||.|||||..|..|||||||.|||.|||||.|.|.||
BPUM_1474         42 GCCATCGATTTATTCATTTGAGCTTCACGAAATGAAAGAATGGTTAAAAG     91

BSNT_02588___    101 -ACAACGGA-GAGAAACCGTTCCGTGCGGCTCAGATTTTTGAATGGCTAT    148
                      ||||  || ||.||.||.|||||.||.|||||.||||||||.|||||.|
BPUM_1474         92 AACAA--GACGAAAAGCCTTTCCGCGCAGCTCAAATTTTTGAGTGGCTTT    139

BSNT_02588___    149 ATGAAAAACGCGTATCTTCTTTTGAAGAAATGACAAACCTCTC-AAAGGA    197
                     ||||.|||||.||..|.||.|||||.|.||||.|.|||||||| ||||.|
BPUM_1474        140 ATGAGAAACGTGTGACATCCTTTGATGCAATGTCTAACCTCTCTAAAGAA    189

BSNT_02588___    198 TCTGCGTGAGAAATTAAACACTCACTTTGTGTTAACAACGCTGAAAACGG    247
                     | |..|.||.||||||||..||||.||||.|.|.|||||..|.|||||.|
BPUM_1474        190 T-TAAGAGAAAAATTAAAAGCTCAATTTGCGATCACAACTTTAAAAACCG    238

BSNT_02588___    248 CTG-TTAAACAAACCTCTCAAGACGGTACGATGAAGTTTTTGTTTGAGCT    296
                      || |.||||||||.|||||||||||||||||.||||||||.|||||.||
BPUM_1474        239 -TGATCAAACAAACGTCTCAAGACGGTACGATCAAGTTTTTATTTGAACT    287

BSNT_02588___    297 TCATGACGGTTATACCATCGAAACCGTTTTAATGAGACACGAGTATGGCA    346
                     .||.||.||||||||.||.|||||.||..|.|||.|.||.||.|||||.|
BPUM_1474        288 ACACGATGGTTATACAATTGAAACAGTGCTTATGCGTCATGAATATGGAA    337

BSNT_02588___    347 ATTCTGTATGTGTAACGACACAAGTCGGCTGCCGTATTGGCTGTACATTC    396
                     |.|||||.||.||.||.|||||.||.||.||..|.||.||||||||||||
BPUM_1474        338 ACTCTGTCTGCGTGACAACACAGGTTGGTTGTAGAATCGGCTGTACATTC    387

BSNT_02588___    397 TGTGCGTCAACGCTTGGAGGCTTAAAACGAAACCTTGAAGCGGGGGAAAT    446
                     |||||.||.||.|||||.||.||||||||||||||||||||.||||||||
BPUM_1474        388 TGTGCATCTACACTTGGCGGTTTAAAACGAAACCTTGAAGCCGGGGAAAT    437

BSNT_02588___    447 TGTCGCTCAAGTAGTCAAAGTGCAAAAAGCTCTTGATGAAACGGATGAAC    496
                     .||.||.||||||.|.||||||||..|.||.|||||.|||||.|||||..
BPUM_1474        438 CGTTGCACAAGTATTAAAAGTGCAGCAGGCACTTGACGAAACAGATGAGA    487

BSNT_02588___    497 GCGTCAGCTCTGTCGTGATCATGGGAATCGGCGAACCTTTTGATAACTTT    546
                     |.|||||||||||.||.||||||||.||.||||||||.||||||||||||
BPUM_1474        488 GAGTCAGCTCTGTTGTCATCATGGGTATTGGCGAACCGTTTGATAACTTT    537

BSNT_02588___    547 AACGAAATGCTCGCTTTCTTGAAAATCATTAACCATGACAAGGGCCTGAA    596
                     .|.|||||||||||.|||.|.||||||||.||||||||.||.|||.|.||
BPUM_1474        538 GAAGAAATGCTCGCCTTCCTTAAAATCATCAACCATGATAACGGCTTAAA    587

BSNT_02588___    597 TATCGGTGCTCGCCATATTACGGTCTCTACGAGTGGAATCATCCCGAAAA    646
                     |||||||||.||||||||||||||.||.||.|||||||||||.||.||||
BPUM_1474        588 TATCGGTGCACGCCATATTACGGTTTCGACAAGTGGAATCATTCCAAAAA    637

BSNT_02588___    647 TTTACGAATTTGCTGATCAGCAAATGCAGATTAACTTTGCAATTTCTCTG    696
                     |.||..||||.||||||.||||||||||.||.||||||||..|.||..||
BPUM_1474        638 TCTATCAATTCGCTGATGAGCAAATGCAAATCAACTTTGCTGTGTCATTG    687

BSNT_02588___    697 CACGCGCCGAACACAGAAATCAGAAGCCGTTTGATGCCGATTAACAGAGC    746
                     |||||.|||||||||||.||||||||||||||.||||||||.||.|..||
BPUM_1474        688 CACGCACCGAACACAGAGATCAGAAGCCGTTTAATGCCGATCAATAAGGC    737

BSNT_02588___    747 ATATAAACTGCCTGATCTAATGGAAGCCGTTAAATATTATATTAATAAAA    796
                     ||||||.|||||..|..|||||||||||.|..||||.||.|||.|.||.|
BPUM_1474        738 ATATAAGCTGCCAAAATTAATGGAAGCCATCGAATACTACATTCAAAAGA    787

BSNT_02588___    797 CGGGACGCCGCATCAGCTTTGAATACGGGCTGTTCGGAGGCGTAAACGAC    846
                     ||||..|.||..||||||||||||||||.||.||.|||||.|||||.||.
BPUM_1474        788 CGGGTAGACGTGTCAGCTTTGAATACGGCCTATTTGGAGGAGTAAATGAT    837

BSNT_02588___    847 CAGGTGGAACACGCCGAAGAGCTTGCCGACTTGCTGGAAGGAGTCAAATG    896
                     |||||..|.||.||.|||||.||.||.|||.|..|..|||||.||||.||
BPUM_1474        838 CAGGTTCACCATGCAGAAGAACTAGCAGACCTATTAAAAGGAATCAAGTG    887

BSNT_02588___    897 CCACGTGAACTTGATTCCGGTAAACTACGTGCCTGAACGGGACTATGTGC    946
                     ||||||||||.|.||||||||.|||||.||.||.|||.|.||.||||||.
BPUM_1474        888 CCACGTGAACCTCATTCCGGTGAACTATGTACCAGAAAGAGATTATGTGA    937

BSNT_02588___    947 GCACACCGCGTGATCAGATTTTTGCT-TTTGAAAAAACGCTGAAATCCCG    995
                     |.|||||..|.||.|| |.|.||.|| ||||||||||||||||||...||
BPUM_1474        938 GAACACCTAGAGAGCA-AATCTTCCTATTTGAAAAAACGCTGAAAGAACG    986

BSNT_02588___    996 CGGAGTAAATGTCACAATCCGAAGAGAGCAAGGACATGACATTGACGCAG   1045
                     |||.|||||.||.|||||..||.||||||||||.|||||||||||.||.|
BPUM_1474        987 CGGCGTAAACGTAACAATTAGACGAGAGCAAGGCCATGACATTGATGCTG   1036

BSNT_02588___   1046 CCTGCGGTCAGCTTCGCGCGAAGGAGCGTCAAGACGAGACGAGGTGA   1092
                     |.|||||||||||..|.||||||||||||||.||.||||||||||||
BPUM_1474       1037 CTTGCGGTCAGCTAAGAGCGAAGGAGCGTCAGGAAGAGACGAGGTGA   1083


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