Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02588 and BPUM_1474
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_02588___yloN.1.24716.seq
# -bsequence dna-align/BPUM_1474.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02588___yloN-BPUM_1474.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02588___yloN-BPUM_1474.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02588___yloN
# 2: BPUM_1474
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1097
# Identity: 858/1097 (78.2%)
# Similarity: 858/1097 (78.2%)
# Gaps: 19/1097 ( 1.7%)
# Score: 3305.5
#
#
#=======================================
BSNT_02588___ 1 ATGGCAGAACTTAATAAAACAAAAGTAAGAAAAGAATTGCGGACAGAGCG 50
|||.|||||| .||||||||||||||||.||...|||||...
BPUM_1474 1 ATGACAGAAC---------AAAAAGTAAGAAAAGAACTGAAAACAGATAT 41
BSNT_02588___ 51 TCCGTCGATTTATTCTTTTGAATTAGACGAAATTAAACAATGGCTGACAG 100
.||.|||||||||||.|||||..|..|||||||.|||.|||||.|.|.||
BPUM_1474 42 GCCATCGATTTATTCATTTGAGCTTCACGAAATGAAAGAATGGTTAAAAG 91
BSNT_02588___ 101 -ACAACGGA-GAGAAACCGTTCCGTGCGGCTCAGATTTTTGAATGGCTAT 148
|||| || ||.||.||.|||||.||.|||||.||||||||.|||||.|
BPUM_1474 92 AACAA--GACGAAAAGCCTTTCCGCGCAGCTCAAATTTTTGAGTGGCTTT 139
BSNT_02588___ 149 ATGAAAAACGCGTATCTTCTTTTGAAGAAATGACAAACCTCTC-AAAGGA 197
||||.|||||.||..|.||.|||||.|.||||.|.|||||||| ||||.|
BPUM_1474 140 ATGAGAAACGTGTGACATCCTTTGATGCAATGTCTAACCTCTCTAAAGAA 189
BSNT_02588___ 198 TCTGCGTGAGAAATTAAACACTCACTTTGTGTTAACAACGCTGAAAACGG 247
| |..|.||.||||||||..||||.||||.|.|.|||||..|.|||||.|
BPUM_1474 190 T-TAAGAGAAAAATTAAAAGCTCAATTTGCGATCACAACTTTAAAAACCG 238
BSNT_02588___ 248 CTG-TTAAACAAACCTCTCAAGACGGTACGATGAAGTTTTTGTTTGAGCT 296
|| |.||||||||.|||||||||||||||||.||||||||.|||||.||
BPUM_1474 239 -TGATCAAACAAACGTCTCAAGACGGTACGATCAAGTTTTTATTTGAACT 287
BSNT_02588___ 297 TCATGACGGTTATACCATCGAAACCGTTTTAATGAGACACGAGTATGGCA 346
.||.||.||||||||.||.|||||.||..|.|||.|.||.||.|||||.|
BPUM_1474 288 ACACGATGGTTATACAATTGAAACAGTGCTTATGCGTCATGAATATGGAA 337
BSNT_02588___ 347 ATTCTGTATGTGTAACGACACAAGTCGGCTGCCGTATTGGCTGTACATTC 396
|.|||||.||.||.||.|||||.||.||.||..|.||.||||||||||||
BPUM_1474 338 ACTCTGTCTGCGTGACAACACAGGTTGGTTGTAGAATCGGCTGTACATTC 387
BSNT_02588___ 397 TGTGCGTCAACGCTTGGAGGCTTAAAACGAAACCTTGAAGCGGGGGAAAT 446
|||||.||.||.|||||.||.||||||||||||||||||||.||||||||
BPUM_1474 388 TGTGCATCTACACTTGGCGGTTTAAAACGAAACCTTGAAGCCGGGGAAAT 437
BSNT_02588___ 447 TGTCGCTCAAGTAGTCAAAGTGCAAAAAGCTCTTGATGAAACGGATGAAC 496
.||.||.||||||.|.||||||||..|.||.|||||.|||||.|||||..
BPUM_1474 438 CGTTGCACAAGTATTAAAAGTGCAGCAGGCACTTGACGAAACAGATGAGA 487
BSNT_02588___ 497 GCGTCAGCTCTGTCGTGATCATGGGAATCGGCGAACCTTTTGATAACTTT 546
|.|||||||||||.||.||||||||.||.||||||||.||||||||||||
BPUM_1474 488 GAGTCAGCTCTGTTGTCATCATGGGTATTGGCGAACCGTTTGATAACTTT 537
BSNT_02588___ 547 AACGAAATGCTCGCTTTCTTGAAAATCATTAACCATGACAAGGGCCTGAA 596
.|.|||||||||||.|||.|.||||||||.||||||||.||.|||.|.||
BPUM_1474 538 GAAGAAATGCTCGCCTTCCTTAAAATCATCAACCATGATAACGGCTTAAA 587
BSNT_02588___ 597 TATCGGTGCTCGCCATATTACGGTCTCTACGAGTGGAATCATCCCGAAAA 646
|||||||||.||||||||||||||.||.||.|||||||||||.||.||||
BPUM_1474 588 TATCGGTGCACGCCATATTACGGTTTCGACAAGTGGAATCATTCCAAAAA 637
BSNT_02588___ 647 TTTACGAATTTGCTGATCAGCAAATGCAGATTAACTTTGCAATTTCTCTG 696
|.||..||||.||||||.||||||||||.||.||||||||..|.||..||
BPUM_1474 638 TCTATCAATTCGCTGATGAGCAAATGCAAATCAACTTTGCTGTGTCATTG 687
BSNT_02588___ 697 CACGCGCCGAACACAGAAATCAGAAGCCGTTTGATGCCGATTAACAGAGC 746
|||||.|||||||||||.||||||||||||||.||||||||.||.|..||
BPUM_1474 688 CACGCACCGAACACAGAGATCAGAAGCCGTTTAATGCCGATCAATAAGGC 737
BSNT_02588___ 747 ATATAAACTGCCTGATCTAATGGAAGCCGTTAAATATTATATTAATAAAA 796
||||||.|||||..|..|||||||||||.|..||||.||.|||.|.||.|
BPUM_1474 738 ATATAAGCTGCCAAAATTAATGGAAGCCATCGAATACTACATTCAAAAGA 787
BSNT_02588___ 797 CGGGACGCCGCATCAGCTTTGAATACGGGCTGTTCGGAGGCGTAAACGAC 846
||||..|.||..||||||||||||||||.||.||.|||||.|||||.||.
BPUM_1474 788 CGGGTAGACGTGTCAGCTTTGAATACGGCCTATTTGGAGGAGTAAATGAT 837
BSNT_02588___ 847 CAGGTGGAACACGCCGAAGAGCTTGCCGACTTGCTGGAAGGAGTCAAATG 896
|||||..|.||.||.|||||.||.||.|||.|..|..|||||.||||.||
BPUM_1474 838 CAGGTTCACCATGCAGAAGAACTAGCAGACCTATTAAAAGGAATCAAGTG 887
BSNT_02588___ 897 CCACGTGAACTTGATTCCGGTAAACTACGTGCCTGAACGGGACTATGTGC 946
||||||||||.|.||||||||.|||||.||.||.|||.|.||.||||||.
BPUM_1474 888 CCACGTGAACCTCATTCCGGTGAACTATGTACCAGAAAGAGATTATGTGA 937
BSNT_02588___ 947 GCACACCGCGTGATCAGATTTTTGCT-TTTGAAAAAACGCTGAAATCCCG 995
|.|||||..|.||.|| |.|.||.|| ||||||||||||||||||...||
BPUM_1474 938 GAACACCTAGAGAGCA-AATCTTCCTATTTGAAAAAACGCTGAAAGAACG 986
BSNT_02588___ 996 CGGAGTAAATGTCACAATCCGAAGAGAGCAAGGACATGACATTGACGCAG 1045
|||.|||||.||.|||||..||.||||||||||.|||||||||||.||.|
BPUM_1474 987 CGGCGTAAACGTAACAATTAGACGAGAGCAAGGCCATGACATTGATGCTG 1036
BSNT_02588___ 1046 CCTGCGGTCAGCTTCGCGCGAAGGAGCGTCAAGACGAGACGAGGTGA 1092
|.|||||||||||..|.||||||||||||||.||.||||||||||||
BPUM_1474 1037 CTTGCGGTCAGCTAAGAGCGAAGGAGCGTCAGGAAGAGACGAGGTGA 1083
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