Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02587 and BPUM_1473
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:09
# Commandline: needle
# -asequence dna-align/BSNT_02587___yloM.1.24716.seq
# -bsequence dna-align/BPUM_1473___rsmB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02587___yloM-BPUM_1473___rsmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02587___yloM-BPUM_1473___rsmB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02587___yloM
# 2: BPUM_1473___rsmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity: 973/1383 (70.4%)
# Similarity: 973/1383 (70.4%)
# Gaps: 78/1383 ( 5.6%)
# Score: 3213.0
#
#
#=======================================
BSNT_02587___ 1 ATGAAAAAAACTAGTGTTCGTGACATCGCCCTTGAGGCGCTGATCAAATT 50
|||||.||||.||.|||..|.||..|.||.||.||.||..|.||||||.|
BPUM_1473___r 1 ATGAAGAAAAGTAATGTGAGAGAAGTAGCGCTGGACGCTTTAATCAAACT 50
BSNT_02587___ 51 AGAACAAAACCAGGCATACAGCAACCTGCTGCTGAAATCGGTCATTAAA- 99
.|||||||||||.||.||.||.||..|.|||.||.|.||.|||||.|||
BPUM_1473___r 51 CGAACAAAACCAAGCTTATAGTAATTTACTGTTGCAGTCAGTCATGAAAG 100
BSNT_02587___ 100 TCAAATGAACTGAGTGATCAGGACAGAG-GGCTTTTGACTGAACTTGTCT 148
.|||| ||..||...|||||.|||| || .|||.||.||.||.|||||||
BPUM_1473___r 101 ACAAA-GACTTGGCAGATCAAGACA-AGCCGCTCTTAACAGAGCTTGTCT 148
BSNT_02587___ 149 ATGGTACATTACAAAATAAGATCGCGCTTGATTATATGCTTAAACCGTTT 198
|.||||||.|.|||||.|||.|.||..|.|||||||||||...|||.|||
BPUM_1473___r 149 ACGGTACACTGCAAAACAAGCTGGCATTAGATTATATGCTGGCACCATTT 198
BSNT_02587___ 199 ATCAATAAGCCTCAAAAGGTAAAGCCGTGGGTGATTCAGCTTCTTCGCCT 248
.|.||.||.||.||||||||....||||||||.||.||||||.|.||..|
BPUM_1473___r 199 GTGAAAAAACCGCAAAAGGTGGCTCCGTGGGTCATGCAGCTTTTGCGGAT 248
BSNT_02587___ 249 ATC-CTTATATCAAATGGAGTATTTAGAGAAGATTCCAGACAGGGCAGCC 297
.|| ||| ||||||||||..||..|.||.|||||||||||..|.||||||
BPUM_1473___r 249 GTCTCTT-TATCAAATGGTCTACCTTGAAAAGATTCCAGATCGTGCAGCC 297
BSNT_02587___ 298 ATTCATGAAGCGGTTGAGATTGCTAAAATCCGCGGACACAAAGGCATTGC 347
||.||||||||.||.|||.|..|.||||...|.||.|||||.||||||.|
BPUM_1473___r 298 ATCCATGAAGCAGTAGAGCTAACGAAAAAGAGAGGGCACAAGGGCATTTC 347
BSNT_02587___ 348 TTCATTTGTCAACGGCGTGCTCCGTTCTATTCAGCGCGAAGGTGTTCCAT 397
||||.||||.|||||.||.||.|||||..|.||..|.|||||.|||||..
BPUM_1473___r 348 TTCACTTGTGAACGGGGTTCTTCGTTCCGTGCAAAGAGAAGGCGTTCCGG 397
BSNT_02587___ 398 CCTTTGACGCGATCGAAGATCCTG-TACGCCGGCTGGCGACAGAAACAAG 446
|.|||||.|..|||.|||||||.| ||.| |||||..|||..||.|||||
BPUM_1473___r 398 CTTTTGATGACATCAAAGATCCAGTTAAG-CGGCTATCGATTGAGACAAG 446
BSNT_02587___ 447 CCATCCGGAGTGGCTTGTGAAAGAGTGGGCGGATGCGTATGGATTTGAAG 496
|||.||....|||||.|||.|.||.||||...|..||||.||||||||||
BPUM_1473___r 447 CCACCCATTATGGCTCGTGCAGGAATGGGTTCAGTCGTACGGATTTGAAG 496
BSNT_02587___ 497 CTGCGGAAAAGATTTGCCGCATCCATCTCA-TTCCGCCGAAGCAGACGCT 545
|..|.||||..||.||||||||.|| ||.| |.|||||.|||||.||.||
BPUM_1473___r 497 CGACAGAAAGCATGTGCCGCATTCA-CTTAGTACCGCCAAAGCAAACCCT 545
BSNT_02587___ 546 GCGTGTCAATCAAATGAAAGCAGACAGAGCTGAGCTGCTTGA--CCAAA- 592
.||||||||.|.|||.|||.|.|||.|.|| ||| .|||| |.|||
BPUM_1473___r 546 TCGTGTCAACCGAATAAAAACGGACCGCGC--AGC--ATTGAAGCAAAAA 591
BSNT_02587___ 593 ----TGGCTGCTGAGGGAATCGAAGTTGAAAAAGGCGACCTCGCTGAAGA 638
|||.||| .|||||||||...||....||.|||.|..|||||||
BPUM_1473___r 592 CTGCTGGATGC---CGGAATCGAAACGGAGCTTGGAGACTTATCTGAAGA 638
BSNT_02587___ 639 TGCTGTGAAGCT-CTTAAAGGGAACA--ATTGCCGGAACTCATTTCTTCC 685
|||..|.||||| .|.||||||..|| .||.| |||||.||..||.|
BPUM_1473___r 639 TGCACTCAAGCTAATGAAAGGGTCCATCGTTTC---AACTCCTTCTTTTC 685
BSNT_02587___ 686 AAAACGGCGAAGTTTCCATCCAGGATGAGAGCTCCATGCTCGTCGCCCGC 735
||.|.|||.|.||..||||.||.|||||.|||||.|||||.||.||..|.
BPUM_1473___r 686 AAGAAGGCTATGTGACCATTCAAGATGAAAGCTCAATGCTTGTTGCAAGA 735
BSNT_02587___ 736 GCCCTTGACCCTAAGCCTGATGAAACAGTGCTTGACGCGTGTGCGGCGCC 785
||.||.||||||.||||.|..|||||.||.|||||.||.||||||||.||
BPUM_1473___r 736 GCACTAGACCCTCAGCCGGGAGAAACTGTACTTGATGCCTGTGCGGCTCC 785
BSNT_02587___ 786 TGGCGGAAAGTCGGCTCATATCGCAGA----ATTA---ATGCAGAACAAG 828
.||||||||.||..|.||||||||.|| ||.| |.|.||.||||
BPUM_1473___r 786 GGGCGGAAAATCAACACATATCGCTGAGCGTATGAACGACGAAGGACAA- 834
BSNT_02587___ 829 GGGAGCGTTACGTCGCTTGATCTTCACAAACATAAAGTGAAGCTGATCAA 878
|..||| ||.||||||.|.|||.|||||||||||||.||.|||||
BPUM_1473___r 835 ---ATTGTT---TCACTTGATTTGCACGAACATAAAGTGAAACTCATCAA 878
BSNT_02587___ 879 AGAAGCGGCAGACCGGCTTGGCCTGACAATC--ATTCATGCGGAAACAAT 926
|.||||.|||.|.||.||...|||.|| || |||.|.||..||.||.|
BPUM_1473___r 879 ACAAGCAGCAAAACGTCTAAACCTTAC--TCAGATTGAAGCAAAAGCACT 926
BSNT_02587___ 927 GGATGCTAGAAAAGCGGGGGAAACGTTTGAAAACGA--ACAG-------- 966
.|||||.||.||||| |||.| |||| ||||
BPUM_1473___r 927 CGATGCAAGGAAAGC-----AAAGG-------ACGATTACAGCGAAGCTT 964
BSNT_02587___ 967 --TTTGACCGAATATTGGTCGATGCCCCGTGCTCAGGTTTCGGTGTTATC 1014
||||||||.||..||.|.|||||.|||||.||.|||||.||.||.||.
BPUM_1473___r 965 CCTTTGACCGGATTCTGATTGATGCACCGTGTTCTGGTTTTGGCGTCATT 1014
BSNT_02587___ 1015 AGAAGAAAGCCGGACATGAAATACACGAAAAAG---CCTGACGACAGCGC 1061
|||.||||.||.||.||||||||.|| |||| ||.||.|||...||
BPUM_1473___r 1015 AGACGAAAACCAGATATGAAATATAC---AAAGTCTCCAGAAGACTCAGC 1061
BSNT_02587___ 1062 CCGTCTAGCTGAAATCCAGCTGTCGATCCTGAGGGAAATCGCACCATTAG 1111
..|.||.|||..|||.||||.|.|.|||.|.|..||||..||.|||.|..
BPUM_1473___r 1062 AAGGCTTGCTATAATTCAGCAGGCAATCTTAAAAGAAACAGCTCCACTTT 1111
BSNT_02587___ 1112 TAAAAAAAGGTGGCACTCTTGTCTACAGTACGTGTACAATGGACCGGACA 1161
|||||...||.||.||.|||||.||.|||||.|||||||||||||...||
BPUM_1473___r 1112 TAAAACCTGGCGGAACCCTTGTGTATAGTACATGTACAATGGACCCATCA 1161
BSNT_02587___ 1162 GAAAATGATGAAGTAATACATGCGTTTATACAAGAACATCCTGATTTTGA 1211
||||||.|..||||.||.|||||||||.||||||||||.|..||.||.||
BPUM_1473___r 1162 GAAAATCAACAAGTGATTCATGCGTTTTTACAAGAACACCAAGACTTCGA 1211
BSNT_02587___ 1212 ACCCGATTTGTCTCTTGAAAAGCGGCTGCCTGAAAAGGTGAGACCCTTTG 1261
|||||||.|.||||||.|..|.|||||||||||..||||....||.||||
BPUM_1473___r 1212 ACCCGATCTATCTCTTAATGAACGGCTGCCTGAGCAGGTTGCTCCGTTTG 1261
BSNT_02587___ 1262 TTCGGGATGGAAGGCTTCAGATCCTTCCTCATTATTTCGGAACAGATGGT 1311
|||...|.|||||..|.||.||.|||||||||||||||||||||||||||
BPUM_1473___r 1262 TTCAAAACGGAAGTGTGCAAATTCTTCCTCATTATTTCGGAACAGATGGT 1311
BSNT_02587___ 1312 TTCTTTATTTGCAGCATGAGAAAGAAGGGATAA 1344
|||||||||||||||||||||||||||||||||
BPUM_1473___r 1312 TTCTTTATTTGCAGCATGAGAAAGAAGGGATAA 1344
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