Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02584 and BPUM_1470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_02584___priA.1.24716.seq
# -bsequence dna-align/BPUM_1470___priA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02584___priA-BPUM_1470___priA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02584___priA-BPUM_1470___priA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02584___priA
# 2: BPUM_1470___priA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2554
# Identity: 1748/2554 (68.4%)
# Similarity: 1748/2554 (68.4%)
# Gaps: 281/2554 (11.0%)
# Score: 5730.0
#
#
#=======================================
BSNT_02584___ 1 ATGAATTTTGCCGAAGTCATCGTTGATGTGAGCACCAAAAATATAGACAG 50
|||| ||||.|||||||||||.|||||.|..||.|||...||.||..|
BPUM_1470___p 1 ATGA---TTGCTGAAGTCATCGTAGATGTCACGACGAAAGCCATTGATCG 47
BSNT_02584___ 51 GCCTTTTGATTA-----TAAAATCCCAGA-CCATCTCAAGGGCATGATCA 94
|||.||.||||| || ||||| |.|| ||||.|...|..|||
BPUM_1470___p 48 GCCATTCGATTACCGTGTA-----CCAGATCGAT-TCAAAGATCTCGTCA 91
BSNT_02584___ 95 AAACGGGGATGCGGGTCATTGTTCCGTTTGGCCCCCGTAAGATTCAAGGA 144
||.||||.|||.||||..|.|||||.||||||||..|.|||||||||||.
BPUM_1470___p 92 AAGCGGGAATGAGGGTGGTCGTTCCCTTTGGCCCGAGGAAGATTCAAGGG 141
BSNT_02584___ 145 TTTGTGACAGCAGTCAAAGAAGCATCTGACCTATCGGGAAAATCTGTCAA 194
|||||||||..|||||||||||.|.|.|||.|| |||| .|
BPUM_1470___p 142 TTTGTGACAAAAGTCAAAGAAGAAACAGACGTA-----AAAA------CA 180
BSNT_02584___ 195 GGAAG--TAGAG---------GGTTTATTAGATCTTA-CACCTGTTCTGA 232
||||| ||.|| |.||||||.||| ||| ||||||||||||
BPUM_1470___p 181 GGAAGCATAAAGGACATTGTCGATTTATTTGAT-TTATCACCTGTTCTGA 229
BSNT_02584___ 233 CAGAGGAGCTTATGGATCTGTCATCA-TGGCTGTCAGACAAAACGCTGTC 281
||||.|||||.|||||.||.|| .|| ||||||.|.||.|||||..||||
BPUM_1470___p 230 CAGATGAGCTAATGGAGCTTTC-CCACTGGCTGACGGAAAAAACATTGTC 278
BSNT_02584___ 282 TTTTAAAATAACGGCGCTTCAAGCAATGCTGCCTGCCGCCTTAAAGGCGA 331
.|.|.|.||||||||.||||||.|.|||.|||||||.|||.|.|||||||
BPUM_1470___p 279 CTATCACATAACGGCACTTCAATCGATGTTGCCTGCAGCCATGAAGGCGA 328
BSNT_02584___ 332 AATATGAAAAAGAATTAAAAAT---------TGCACACGGCGCCGATCTT 372
|.||||||||||||.|..||.| ||.| ||.|||
BPUM_1470___p 329 AGTATGAAAAAGAAATTCAAGTGCTGTCAGATGAA---------GAACTT 369
BSNT_02584___ 373 CCGCCGCAAGTGGAACGGCTGTTTACTGAAACAAAGACGCTGTTGTATTC 422
||||.|..|.||.||..|| |||.|.|..|...||| |.|.||||
BPUM_1470___p 370 CCGCAGTCATTGAAAGAGC--TTTTCGGTCAGCGAGA-----TAGCATTC 412
BSNT_02584___ 423 GGATATAC-CCGATCATGATAC-GCTG--------AAACTGATTCAAAGG 462
|.||| |.|| ||| |.| |||| ||||.||||||||.|
BPUM_1470___p 413 ---TTTACGCTGA-CAT--TCCAGCTGAACAACTAAAACAGATTCAAAAG 456
BSNT_02584___ 463 CATGTTCAAAAAGGGGACATTGACGTGACGTATAAAGTCGCGCAAAAAAC 512
|||||.|||||||||.|..|.||.||.|.||||.|.|||.||||||||.|
BPUM_1470___p 457 CATGTCCAAAAAGGGCATCTAGAGGTAAGGTATCACGTCTCGCAAAAATC 506
BSNT_02584___ 513 ---CAATAAAAAAATGGTCAGGCATATTCA---GGCAAATGCGAGTAAAG 556
.||.||||||.||..||.|| |.|| .|||..|.|| ||||
BPUM_1470___p 507 TGGAAAGAAAAAAGTGCGCATGC---TCCAACTAGCAGCTTCG---AAAG 550
BSNT_02584___ 557 AAGAGCTT---GCTAAGCAG-----GCTGAGGGATTGTCCCGCCAA--GC 596
|..||||| |..|||||| |||||.|.| || ||
BPUM_1470___p 551 ATAAGCTTGAAGAAAAGCAGCAGCAGCTGAAGAA----------AAATGC 590
BSNT_02584___ 597 AGCAAAACAGCAGGCGATTCTTCACTTTCT--CATCTCTGAGCCGGAAG- 643
.|..|||||..|||| |.|..||.|.|||| |.|| |||
BPUM_1470___p 591 GGTCAAACAAAAGGC-ACTGCTCTCCTTCTTGCTTC----------AAGC 629
BSNT_02584___ 644 GTGTGAAAATTCCTGCT--GCGGAATTG---TGCA--AAAAAACGGACAC 686
|.||||.|...|||..| |||.|| | |||| ||.||||.|.|.|
BPUM_1470___p 630 GAGTGAGACGACCTTTTTAGCGAAA--GACTTGCAGCAACAAACAGGCGC 677
BSNT_02584___ 687 GAGCTCTGCAACCATCAAAACCCTTATCCAAAAAGGGCTTTTGAAGGAAA 736
|||.|||..|||..|.||||||.|.||.|||.||||.||.||.|..||||
BPUM_1470___p 678 GAGTTCTCAAACGCTTAAAACCTTGATTCAAGAAGGACTGTTAATAGAAA 727
BSNT_02584___ 737 GCTATGAAGAGGTTTACAGAGATCCCTATCAGGACAAAATGTTCAAAAAA 786
|||||||||||||.|||.|.|||||.||||.||||.....||| .
BPUM_1470___p 728 GCTATGAAGAGGTCTACCGCGATCCTTATCGGGACCGGGCGTT------T 771
BSNT_02584___ 787 ACA---------------GAGCCCCTGCCGCTGACAGACGAACAGAGGGC 821
||| ||.|.|.||| |||| ||.|.|||| .||
BPUM_1470___p 772 ACACCTTCTGCCTCACTTGACCTCATGC--CTGA---ACAAGCAGA-AGC 815
BSNT_02584___ 822 TGC----------CTTCGAGCCCATACGCGAGACATTG--GACAG---CG 856
.|| |.||.||| ||.||.|| |||.| ||
BPUM_1470___p 816 GGCAAAACATATTCATCAAGC---------AGTCAGTGATGACCGGCACG 856
BSNT_02584___ 857 ATGAGCATAAAGTGTTCCTCCTTCACGGCGTGACAGGAAGCGGAAAAACC 906
| ||.| ||.||.||.|||||.||.|||||||||||.|||||.
BPUM_1470___p 857 A-GACC--------TTTCTGCTGCACGGGGTAACAGGAAGCGGTAAAACG 897
BSNT_02584___ 907 GAAATTTATCTGCAATCAATTGAAAAAGTACTGGCGAAAGGAAAAGAAGC 956
|||||.|||.||||..|.|||||..|.|..||....||||||||||||||
BPUM_1470___p 898 GAAATATATTTGCAGACGATTGATCATGCTCTTCAAAAAGGAAAAGAAGC 947
BSNT_02584___ 957 CATCGTCCTCGTACCGGAAATATCGCTGACGCCGCAAATGG-TCAACCGC 1005
.|||||.||.||.||.|||||.|||.|.||.||.||||||| |||| ||.
BPUM_1470___p 948 GATCGTTCTTGTTCCAGAAATCTCGTTAACCCCTCAAATGGTTCAA-CGA 996
BSNT_02584___ 1006 TTCAAGGGCCGCTTCGGCTCCCAGGTGGCAGTCATGCACAGCGGTTTATC 1055
||.||.|..||.||.||.||..|.|||||.|||.|.||||||||.|||||
BPUM_1470___p 997 TTTAAAGAACGATTTGGTTCAAATGTGGCTGTCCTTCACAGCGGCTTATC 1046
BSNT_02584___ 1056 CACAGGAGAAAAATATGACGAGTGGCGTAAAATCCACCGGAAGGAAGTAC 1105
.|||||||||||||||||.||.|||||.|||||||||||.||.|||||..
BPUM_1470___p 1047 GACAGGAGAAAAATATGATGAATGGCGGAAAATCCACCGCAAAGAAGTCA 1096
BSNT_02584___ 1106 GGCTTGTCGTCGGTGCCAGATCCGCGATTTTTGCTCCGTTTGAAAATCTA 1155
.||||||.||.||.||.|||||.||..||||.||.||.||||||||||||
BPUM_1470___p 1097 AGCTTGTTGTAGGCGCGAGATCGGCAGTTTTCGCACCATTTGAAAATCTA 1146
BSNT_02584___ 1156 GGAATGATAATCATCGATGAAGAGCACGAGTCTTCCTATAAACAGGAAGA 1205
||.|||||.|||||.|||||||||||.||.|||||.||||||||.||.||
BPUM_1470___p 1147 GGCATGATTATCATAGATGAAGAGCATGAATCTTCTTATAAACAAGAGGA 1196
BSNT_02584___ 1206 AATGCCGCGCTATCATGCGAAAGAGGTGGCAATCAAGCGGGCCGA---GC 1252
||||||.||.||||||||.||.||.||.||.||..|.||.|||.| ||
BPUM_1470___p 1197 AATGCCTCGTTATCATGCCAAGGACGTCGCCATTGAACGAGCCAAAAGGC 1246
BSNT_02584___ 1253 ATCACAGCTGCCCGGTTGTATTAGGGAGTGCTACGCCGACATTAGAGTCA 1302
||| |.||.||.||.||.|||||.|||||.||.||..||.|.||..|.
BPUM_1470___p 1247 ATC---GATGTCCAGTCGTTTTAGGCAGTGCAACCCCTTCACTTGAAACG 1293
BSNT_02584___ 1303 TATGCAAGAGCGCAAAAGGGCGT------ATACGAGCTTCTTTCACTGAA 1346
||.||..|.||.|||||.||||| || |.||..|.||.||
BPUM_1470___p 1294 TACGCGCGTGCCCAAAAAGGCGTGTTTACAT------TGCTGACGCTTAA 1337
BSNT_02584___ 1347 GCACCGTGTTAACCATCGGGTGATGCCTGAGGTTTCGCTTGTCGATATGA 1396
||||||.||.|||||.|....|.||||..|.||||||.|..|.|||||||
BPUM_1470___p 1338 GCACCGAGTGAACCAGCAAAAGCTGCCGCACGTTTCGTTAATTGATATGA 1387
BSNT_02584___ 1397 GAGAGGAGCTTAGAAACGGCAATCGCTCGATGTTTTCAGTTGAATTGAT- 1445
||||.||..|.|||||.||.||..|.||.||||||||||..|||||.||
BPUM_1470___p 1388 GAGAAGAATTGAGAAATGGTAACAGGTCTATGTTTTCAGAAGAATTAATG 1437
BSNT_02584___ 1446 -----------GGAAAAGCTTG-AAGAAACGATTGCCAAGGGTGAGCAGG 1483
||||..||||| |||||| .||.||.|
BPUM_1470___p 1438 CTCAGATTAAAGGAAGTGCTTGAAAGAAA-------------AGAACAAG 1474
BSNT_02584___ 1484 CGGTGCTGTTTTTAAATAAGAGGGGCTATTCTTCCTTTGTGATGTGCAGG 1533
|.||..|.|||.|.|||||.|||||.|||||.|||||||||||||||.|.
BPUM_1470___p 1475 CCGTCTTATTTCTGAATAAAAGGGGTTATTCATCCTTTGTGATGTGCCGT 1524
BSNT_02584___ 1534 GATTGCGGCTATGTCCCGCAATGCCCGCACTGCGACATTTCCATGACGTA 1583
||||||||.|||||...|||||||||.||.|||||.|||||..|.||.||
BPUM_1470___p 1525 GATTGCGGATATGTGGAGCAATGCCCCCATTGCGAAATTTCTCTCACCTA 1574
BSNT_02584___ 1584 TCATCGTTACGGCCAAA---GGCTGAAATGCCATTATTGCGGACATGAAG 1630
|||.||.|| .|||| |.||||||||||||||||||||.||.||||
BPUM_1470___p 1575 TCACCGCTA---TCAAAAACGTCTGAAATGCCATTATTGCGGTCACGAAG 1621
BSNT_02584___ 1631 AGCCTGTTCC-GCACACTTGTCCTGAATGCGCA-AGCGAGCATATCCGCT 1678
..||.||.|| |.|.| .|||||.|||||| || ||.||||||||.||||
BPUM_1470___p 1622 CACCAGTGCCAGAAGA-ATGTCCAGAATGC-CATAGTGAGCATATTCGCT 1669
BSNT_02584___ 1679 TTTTCGGAACGGGAACACAGCGAGTGGAGGAAGAGCTGACAAAAGTGCTG 1728
.|||.||.|||||.||.|||||.||.||.|||||||||||||||||.|||
BPUM_1470___p 1670 ATTTTGGTACGGGTACGCAGCGTGTAGAAGAAGAGCTGACAAAAGTACTG 1719
BSNT_02584___ 1729 CCA-AGTGCGAGAGTGATTCGGATGGATGTTGACACGACATCACGGAAAG 1777
||| || ||.|||||.|||||.||||||||.||.||.||.||.||.||||
BPUM_1470___p 1720 CCAGAG-GCAAGAGTCATTCGAATGGATGTGGATACAACGTCTCGTAAAG 1768
BSNT_02584___ 1778 GCGCCCATGAAAAATTACTGTCAGCTTTCGG--AGAAGGAAAAGCGGATA 1825
|.||.|||||||||.|.||..||.||||..| |.|| |.|||||||.|
BPUM_1470___p 1769 GTGCTCATGAAAAACTCCTTACATCTTTTAGCAATAA--AGAAGCGGACA 1816
BSNT_02584___ 1826 TTCTT-CTCGGAACGCAAATGATCGCGAAAGGGCTTGATTTTCCGAATGT 1874
|||| |||||.|||||.|||||.||.||||||.|.|||||.||..||||
BPUM_1470___p 1817 -TCTTGCTCGGGACGCAGATGATTGCAAAAGGGTTAGATTTCCCAGATGT 1865
BSNT_02584___ 1875 CACGCTTGTCGGAGTGTTAAGTGCTGATACAACACTTCATATTCCTGATT 1924
|||.|||||.|||||..|||||||.|||||..|.||||||||||||||||
BPUM_1470___p 1866 CACACTTGTTGGAGTTCTAAGTGCGGATACGTCTCTTCATATTCCTGATT 1915
BSNT_02584___ 1925 TCAGATCGGCTGAAAAAACATTTCAGCTGTTAACGCAAGTCAGCGGCCGG 1974
||.|.||...|||||||||||||||||||.|.|||||.|||||||||.||
BPUM_1470___p 1916 TCCGTTCAAGTGAAAAAACATTTCAGCTGCTCACGCAGGTCAGCGGCAGG 1965
BSNT_02584___ 1975 GCAGGCAGGCATGAAAAGCCCGGCCATGTCATCATTCAAACGTATACACC 2024
|||||..|.||||||||..|.|||..|||||||||||||.|||||||.||
BPUM_1470___p 1966 GCAGGACGACATGAAAAAGCGGGCTCTGTCATCATTCAATCGTATACGCC 2015
BSNT_02584___ 2025 GTCTCATTACAGTATCCAGCTGACGAAAACA-CACGATTATGAAACGTTC 2073
.|||||.||.|||||..|..|.||| ||.|| ||.||.||.|||.|.||.
BPUM_1470___p 2016 TTCTCACTATAGTATTGAATTAACG-AAGCAGCATGACTACGAAGCCTTT 2064
BSNT_02584___ 2074 TATCAGCATGAAATGGCGCACAGGAGAGAGCAATCCTATCCGCCATACTA 2123
|||.|.||.||.|||..|||..|..|..|.||.||.||||||||.||.||
BPUM_1470___p 2065 TATGAACAGGAGATGCTGCATCGCCGCCACCAGTCTTATCCGCCGTATTA 2114
BSNT_02584___ 2124 CTATTTGGCTCTTGTGACTGTTTCTCATGAGGAAGTGGCGAAAGCAGCG- 2172
||.||||||..|.||||||||.||.|||||.||.|||.|.||.||||||
BPUM_1470___p 2115 CTTTTTGGCGATGGTGACTGTATCACATGAAGATGTGACAAAGGCAGCGC 2164
BSNT_02584___ 2173 --GTTACAGCTGAAAAAATCGCTCATTTTTTGAAAGCAAACTGCGGAGCT 2220
||.| |.||..||||.|.|||.|||.|.|||...|||||.|.|.|.
BPUM_1470___p 2165 ATGTCA---CGGATCAAATTGTTCAGTTTCTAAAAATGAACTGTGCACCG 2211
BSNT_02584___ 2221 GACACGAAAATTCTCGGACCAAGC-GCGTCGCCGATAGCCAGGATCAAAG 2269
.|.||.|.|||.||.||.|| .|| ||.||.||.||.||.|.||||||||
BPUM_1470___p 2212 AATACAAGAATCCTTGGTCC-GGCTGCATCACCAATCGCTAAGATCAAAG 2260
BSNT_02584___ 2270 ATAGATATCGCTATCAATGCGTGATAAAATACAAACAGGAAACCCAGTTA 2319
||||||||||.||||||||||||||||||||||||..|||| |.|.|
BPUM_1470___p 2261 ATAGATATCGATATCAATGCGTGATAAAATACAAAAGGGAA----AATGA 2306
BSNT_02584___ 2320 TCTG----CTTTATTGAAGAAGATACTGGAACATTAT-AAACGCGAAATT 2364
.||| .||||.|...|||.||||..||.|||||| |||.| |||||.
BPUM_1470___p 2307 ACTGGCAAGTTTACTACGGAAAATACAAGATCATTATCAAAAG-GAAATG 2355
BSNT_02584___ 2365 GAACAAAAACATGTAATGATTTCAATTGATATGAATCCTTATATGATGAT 2414
|||||||||||..|.|||||||||||.|||||||||||.|||||||||||
BPUM_1470___p 2356 GAACAAAAACAATTGATGATTTCAATAGATATGAATCCATATATGATGAT 2405
BSNT_02584___ 2415 GTAA 2418
||||
BPUM_1470___p 2406 GTAA 2409
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