Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02583 and BPUM_1469
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_02583___yloI.1.24716.seq
# -bsequence dna-align/BPUM_1469___coaBC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02583___yloI-BPUM_1469___coaBC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02583___yloI-BPUM_1469___coaBC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02583___yloI
# 2: BPUM_1469___coaBC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1325
# Identity: 838/1325 (63.2%)
# Similarity: 838/1325 (63.2%)
# Gaps: 211/1325 (15.9%)
# Score: 2545.0
#
#
#=======================================
BSNT_02583___ 1 ---TTGCTAAACAATC--GAAATGTGTTACTTTGCGTGAGCGGAGGCATC 45
|| |||.|| .||||.|.||.||..||||.||||||||.|||
BPUM_1469___c 1 ATGTT-----ACAGTCAAAAAATATTTTGCTCGGCGTCAGCGGAGGAATC 45
BSNT_02583___ 46 GCTGTTTATAAAGCCTGTGCGTTAACAAGCAAGCTGGTTCAGGCAGGAGC 95
||.||.||||||||...|||..|.||.||.||.||.||.|||||.||.||
BPUM_1469___c 46 GCCGTATATAAAGCAGCTGCACTTACTAGTAAACTCGTACAGGCGGGCGC 95
BSNT_02583___ 96 AAATGTCAAAGTGATTATGACTGAATCCGCTTGCCGA-TTCGTTTCACCG 144
||||||.|.|||.||||||||.|||||.|||.| .|| ||.||.||.|||
BPUM_1469___c 96 AAATGTAAGAGTCATTATGACGGAATCTGCTCG-TGAGTTTGTGTCTCCG 144
BSNT_02583___ 145 CTGACATTTCAGGCATTGAGCCGCCACGAAGTCTATACAGATACATTTAA 194
||.||.||.||.||..||...||.||.||.||.|||...|||||||||||
BPUM_1469___c 145 CTTACCTTCCAAGCTCTGTCTCGACATGAGGTGTATGTGGATACATTTAA 194
BSNT_02583___ 195 AGAACAAAATCCAAGCGTCATTTCTCATATTGATGCCGCAGACTGGGCCG 244
||||.|.|||||||..|||||..|.||||||||||..||.||||||||||
BPUM_1469___c 195 AGAAAACAATCCAAAGGTCATAGCGCATATTGATGTAGCTGACTGGGCCG 244
BSNT_02583___ 245 ACTTGATTATCGTAGCGCCGGCTACGGCTAATGTGATTGGAAAACTGGCA 294
|..|.|||.|.||.||.||.||.||.||..||..||||||.|||.|||
BPUM_1469___c 245 ATCTCATTCTAGTTGCCCCTGCAACAGCACATACGATTGGTAAAATGG-- 292
BSNT_02583___ 295 AACGGCA----TCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAA 340
||||| |.||.|||||||||||.|||||.||.||..|.||..|||
BPUM_1469___c 293 --CGGCAGGGCTTGCAGATGATATGCTCACGACGACCTTACTTGCTTCAA 340
BSNT_02583___ 341 CGGCTCCCGTTTGGATCGCGCCGGCGATGAACGTTCATATGTATGACCAC 390
|.|||||.||.|||||.||.||.||||||||.||.|||||||||||.|||
BPUM_1469___c 341 CCGCTCCTGTATGGATTGCACCAGCGATGAATGTGCATATGTATGATCAC 390
BSNT_02583___ 391 CCGGCAGTCAAACGAAACATTTCTGTTC------TTTATCAGGACGGTTA 434
||.||.||.||.||.|||| ||| |.|||.||||.||.||
BPUM_1469___c 391 CCAGCTGTGAAGCGGAACA------TTCGCACATTATATGAGGATGGCTA 434
BSNT_02583___ 435 TCGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAA 484
.||.||||||||.||.||.||.||.||||||||.||.||.|||.|.||||
BPUM_1469___c 435 CCGGTTTATTGAACCGAGCGAAGGTTATTTAGCGTGTGGCTACATTGGAA 484
BSNT_02583___ 485 AAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTGGCCGAAAAACAT 534
||||..||||.||.|||||.|||||.||||||.||| ||||
BPUM_1469___c 485 AAGGGCGATTAGAGGAGCCTGAAAAAATCGTAGAGC----------ACAT 524
BSNT_02583___ 535 -------TTTGCTGAAGAAACA--------TCCGCTC-CTTTAGAAGGCA 568
|||..||||||..|| .|||||| | |||.|
BPUM_1469___c 525 CCGTGCATTTTTTGAAGAGCCAAAAAGCTTACCGCTCTC------AGGTA 568
BSNT_02583___ 569 AGCATGTGGTCATTACAGCCGGCCCAACGCGGGAAGCGGTTGATCCCGTC 618
|..|.||.||..|.|||||.||.||.||..|.||||...|.|||||.||.
BPUM_1469___c 569 AAAAAGTCGTGGTGACAGCAGGTCCTACTAGAGAAGTCATCGATCCTGTG 618
BSNT_02583___ 619 CGGTTTTTTACCAATAAATCGACGGGCAAAATGGGCTACGC-ATTAGCGG 667
||.||.|||||.|||..||||.|.||.|||||||||||.|| ||| ||.|
BPUM_1469___c 619 CGTTTCTTTACAAATCGATCGTCAGGAAAAATGGGCTATGCGATT-GCAG 667
BSNT_02583___ 668 AGGCTGCTGTTCAGCTCGGCGCACGGGTAACCTTAATTTCTGGGCCTGTT 717
|||||||....|||.|.||||||...||.||..|.|||||.||.||||||
BPUM_1469___c 668 AGGCTGCGCAGCAGATGGGCGCAGATGTCACGCTCATTTCAGGACCTGTT 717
BSNT_02583___ 718 TCACTTGA--TCAGCCTA---AAGGCCTTGCTGAGTTTATCCCTGTTCAA 762
| |||.| |.|.|||| |.|.||.|| |..|.|..|||.||
BPUM_1469___c 718 T--CTTTAACTGAACCTAATCATGTCCATG------TGGTGCACGTTGAA 759
BSNT_02583___ 763 TCGGCTGCGGATATGCGCGAAGCTGTGCTCTCTGTGTATGACGCAAG-TG 811
|||||.|.|||.|||....||||.|...|..|||.|||||| |.||| .|
BPUM_1469___c 760 TCGGCAGAGGACATGTATCAAGCCGCATTAGCTGAGTATGA-GGAAGCGG 808
BSNT_02583___ 812 ATATAGTCATTAAAACAGCTGCGGTAGCCGATTTTA-CGCCGAAAACAGT 860
|..|..||||||||.||||.||.||.|||||.|.|| |.|||
BPUM_1469___c 809 ACCTTTTCATTAAATCAGCAGCCGTCGCCGACTATACCCCCG-------- 850
BSNT_02583___ 861 ATTTGAC----------CATAAAATGAAAAAACAAGACGGCGGCATGACC 900
|||| |||||||||||||||||.||||||| ||
BPUM_1469___c 851 ---TGACCTCATATCCACATAAAATGAAAAAACAGGACGGCG------CC 891
BSNT_02583___ 901 TTAGA-ATTGAAAAGAA--CAGTC--------GATATTTTGAAAGAATTG 939
||||| || |||| ||.|| ||||||||.|||||..||
BPUM_1469___c 892 TTAGAGAT-----AGAATTCACTCGGACTAAAGATATTTTAAAAGAGCTG 936
BSNT_02583___ 940 GGCGAGAAAAAGAAAGAGCA------GATTTTGGTCGGATTTGCCGCCGA 983
|| |||||..|||||||| |.|| |||||.|||||.||.||
BPUM_1469___c 937 GG---GAAAAGAAAAGAGCATCAAGTGCTT---GTCGGTTTTGCAGCTGA 980
BSNT_02583___ 984 AACACAAGACATTGAACACTATGCACGTAAAAAG---CTCGCCGCTAAAA 1030
|||.||.||..|.|||.|.||||| .|||||| .|||...||||..
BPUM_1469___c 981 AACGCAGGATGTAGAATATTATGC---GAAAAAGAAAATCGAATCTAAGC 1027
BSNT_02583___ 1031 ACCTTGATTTGATTGTGGCAAATGATGTGAAAGCAAATGGGGCCGGTTTT 1080
|..|.|||.||||||||||.||..|.||.|.|..|.|.||.||.||.|||
BPUM_1469___c 1028 ATTTAGATATGATTGTGGCCAACAACGTCACAAAAGAAGGTGCAGGATTT 1077
BSNT_02583___ 1081 GGTGCTGATACGAATATCGTGACAATCTTTTTCAA---AGACGG----GC 1123
|...|.||.||.||| ||..||..|.|..|||| |||.|| .|
BPUM_1469___c 1078 GCGACAGACACAAAT---GTAGCAGCCATCATCAAAGCAGATGGTACAAC 1124
BSNT_02583___ 1124 ATAAACGCGAACTCCCGATTATGTCTAAG----------CTCGATGTTTC 1163
|.|| |||||.|||||.||| || |||| |
BPUM_1469___c 1125 AAAA----GAACTGCCGATGATG----AGCAAAAAAGACCTCG------C 1160
BSNT_02583___ 1164 TTTTGAAATCCTTCAGGAGATCGCAGACCTCTCAAAA----------CAA 1203
||||||||||.|..||||| .||||| |||
BPUM_1469___c 1161 TTTTGAAATCTTAAAGGAG------------GCAAAACAGCTGTTGCCAA 1198
BSNT_02583___ 1204 ACCGGAGAGCGCT-------CATGA 1221
| |||||| | |||||
BPUM_1469___c 1199 A----AGAGCG-TGATCGAGCATGA 1218
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