Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02577 and BPUM_1465
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_02577___yloC.1.24716.seq
# -bsequence dna-align/BPUM_1465___yloC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02577___yloC-BPUM_1465___yloC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02577___yloC-BPUM_1465___yloC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02577___yloC
# 2: BPUM_1465___yloC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 936
# Identity: 613/936 (65.5%)
# Similarity: 613/936 (65.5%)
# Gaps: 120/936 (12.8%)
# Score: 1765.5
#
#
#=======================================
BSNT_02577___ 1 ATGATACGAAGTATGACAGGCTTCGG-CAGTGCAAGCAAAACACAAGACG 49
||||||||.||||||||.||.||||| || .||.||.|||||..|.|..|
BPUM_1465___y 1 ATGATACGCAGTATGACGGGATTCGGTCA-AGCGAGTAAAACGGATGGAG 49
BSNT_02577___ 50 ATCT--CTCTGTAAGCGTTGAACTTAAATCTGTGAACTACAGATTTAAAG 97
|.|| |..|||.| |||||.||.|||||.||.||..||.|.|||||||
BPUM_1465___y 50 AACTGACAGTGTCA--GTTGAGCTAAAATCGGTCAATCACCGTTTTAAAG 97
BSNT_02577___ 98 AAGTGAACGCTCGTTTGCCAAGGC--CTTTGCTATATTTTGAAGATAAGC 145
|.||..|.||.||||||||.|||| |||| |||||||.|||||.|...
BPUM_1465___y 98 AGGTTCATGCCCGTTTGCCGAGGCCGCTTT--TATATTTCGAAGACACAT 145
BSNT_02577___ 146 TGAAACAGACCATTCTGCAGCATATTCAGCGCGGAAGAATTGAGCTTTTC 195
|.|||.|.|.||||||.|..||..|.|||||.||.|||||||||||.||.
BPUM_1465___y 146 TAAAAAAAATCATTCTTCGTCACGTGCAGCGTGGTAGAATTGAGCTGTTT 195
BSNT_02577___ 196 GTATCCG-TTGACAGCGATATGCTTGTTGAGAAA--AGG--CTTG-AAAT 239
|| |.|| ||||..|||.||..|| ||.|| .|| |||| |.||
BPUM_1465___y 196 GT-TACGATTGAAGGCGGTAAACT-----AGCAAGCCGGTCCTTGCAGAT 239
BSNT_02577___ 240 TGATTGGCCGCTGCTCGATGAATTTGTCGCAGCCGCGAGAGATATGAAGA 289
.||.|||||||||||.|||||||...|...||||||.|.||||.|..|||
BPUM_1465___y 240 CGACTGGCCGCTGCTTGATGAATACATGAAAGCCGCAAAAGATCTCGAGA 289
BSNT_02577___ 290 AACGGTATCA-ATTATC-----TGCAGAACCCGATGTA-ATGGATTTCTT 332
|.||.||||| ||| || |.||| .|||.| || ||.||..|
BPUM_1465___y 290 AGCGCTATCACATT-TCAGGCATTCAG-----CATGCACAT-GACTTACT 332
BSNT_02577___ 333 TAAGCTTGATCATGTCGTCCAGGTTCATGAAGAA-----CAGACGCAAAA 377
|..|||.||.||||.|||.||.|| .|||||| |||.|| |||
BPUM_1465___y 333 TGGGCTAGAGCATGCCGTTCAAGT---AGAAGAATCCGCCAGCCG--AAA 377
BSNT_02577___ 378 TGA-CAAGCTGGAGGCGTTGATTATCGATGCTGCAGAAGAAGCGGTAAAA 426
||| ||| .|.|||...|||.|.||.||.|||...|||...||.||.||.
BPUM_1465___y 378 TGAGCAA-TTAGAGCAATTGCTGATGGAAGCTTGTGAAACGGCTGTCAAG 426
BSNT_02577___ 427 GGTCTCTGTGAAATGCGTGAAAAAGAGGGG-CTGCTCTT--AGCGAAAGA 473
|..||.||....|||.|.||..|.|||||| |..|.||| | |||||
BPUM_1465___y 427 GAGCTTTGCTTCATGAGAGAGCAGGAGGGGACATCACTTCAA---AAAGA 473
BSNT_02577___ 474 CTG---CCTGATGCATATTGATCAGCTTGAAGAG--CTGGTGAG-AGAAA 517
||| .||||.||.|..||| .|| |||| ||....|| |||||
BPUM_1465___y 474 CTGTGAGCTGAGGCTTTCTGA----ATT--AGAGGCCTATACAGAAGAAA 517
BSNT_02577___ 518 CTGAATTGCTGGCTGCAGATGTCGTATCTCGTTACCGGGAACGGCTGT-- 565
...||.|..|.||..||||.||.|| || |.|.||
BPUM_1465___y 518 TCAAAGTCTTTGCACCAGAGGTTGT-------------GA--GTCAGTAT 552
BSNT_02577___ 566 -ACGCCAG----AATCA--------AAGAATGGACTGAAGACGTATTAGA 602
|.|.||| ||||| ||||.|||..||.|||.|...|.||
BPUM_1465___y 553 AAAGACAGGCTCAATCAGCGTTTGCAAGAGTGGGTTGGAGAGGCGCTTGA 602
BSNT_02577___ 603 TGAGAGCCGGCTTG-TAACAGA--ATGCGCTATTTTTGCAGACCGCTCTG 649
.||.|| |.|.||| .|||||| .|||| ||.|||||.|||||.|.||
BPUM_1465___y 603 CGAAAG-CAGATTGACAACAGAGGCTGCG--ATCTTTGCTGACCGGTGTG 649
BSNT_02577___ 650 ATATCACTGAAGAGATTACAAGGCTGAAGAGCCA-TTTCGCCCAGTT--- 695
|.||.||.|||||||||||.||..||||.||.|| |||| ..||.||
BPUM_1465___y 650 ACATTACAGAAGAGATTACGAGATTGAAAAGTCACTTTC-AACAATTCCA 698
BSNT_02577___ 696 -----TCGTGATATATTAGCTAGTGGCGGAGCTGTCGGGCGCAAACTCGA 740
||.|||| ||.| |||||.||||.|||..|.|||||.||
BPUM_1465___y 699 GCAAATCTTGAT------GCAA--GGCGGTGCTGCCGGAAGAAAACTTGA 740
BSNT_02577___ 741 CTTTCTTGTTCAGGAGCTCAATCGGGAAGCAAATACGATCGGCTCAAAAG 790
.||||||||.|||||||||||.||.||||..||.||.||.||||||||||
BPUM_1465___y 741 TTTTCTTGTACAGGAGCTCAACCGTGAAGTGAACACCATTGGCTCAAAAG 790
BSNT_02577___ 791 CAAATGATCATCAGATCACAAAGCTTGTCGTTGAAATGAAAAGTTCTATT 840
|.||..|||||||..|.||.|||||.||.|||||||||||||||.|||||
BPUM_1465___y 791 CGAACCATCATCATTTAACTAAGCTCGTGGTTGAAATGAAAAGTGCTATT 840
BSNT_02577___ 841 GAAAAAATAAAAGAACAAGTGCAAAATATAGAATAG 876
||||||||||||||||||||||||||||||||||||
BPUM_1465___y 841 GAAAAAATAAAAGAACAAGTGCAAAATATAGAATAG 876
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