Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02576 and BPUM_1464
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:07
# Commandline: needle
# -asequence dna-align/BSNT_02576___yloB.1.24716.seq
# -bsequence dna-align/BPUM_1464___yloB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02576___yloB-BPUM_1464___yloB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02576___yloB-BPUM_1464___yloB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02576___yloB
# 2: BPUM_1464___yloB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2782
# Identity: 1959/2782 (70.4%)
# Similarity: 1959/2782 (70.4%)
# Gaps: 215/2782 ( 7.7%)
# Score: 6638.0
#
#
#=======================================
BSNT_02576___ 1 ATGAAGTTTCATGAAATGGGACAAACAGATTTACTAGAGGCAACCAATAC 50
|||||.|..||||||.||...|||||.||||||.||.|..|||..|||||
BPUM_1464___y 1 ATGAATTGGCATGAACTGAACCAAACCGATTTATTAAAAACAATGAATAC 50
BSNT_02576___ 51 GTCCAT--GAAACAAGGATTAACAGAAAAAGAGGTAAAAAAACGCCTTGA 98
.||.|| |..|| |||.|..||||||||||.|||.|||||||.|||||
BPUM_1464___y 51 ATCGATAGGTGAC--GGACTGTCAGAAAAAGATGTACAAAAACGGCTTGA 98
BSNT_02576___ 99 CAAGCATGGACCAAACGAGCTGCAAGAAGGGAAAAAAACTTCAGCGCTTC 148
.||.|||||.|||||.||..||||||||||||||||..|.||.||.||..
BPUM_1464___y 99 AAAACATGGGCCAAATGAATTGCAAGAAGGGAAAAAGGCGTCGGCTCTGA 148
BSNT_02576___ 149 TCTTGTTTTTCGCGCAGTTCAAAGATTTTATGGTG-----CTTGTGCTTC 193
||.|.|||||.|||||.||.||||||||||||||| |||| |
BPUM_1464___y 149 TCATTTTTTTAGCGCAATTTAAAGATTTTATGGTGTTAATCTTG-----C 193
BSNT_02576___ 194 TGGCGGCAACGTTAATCTCAGGTTTTCTTGGTGAATATGTAGATGCGGTT 243
|.||.||||||.|.||.||.|.||||||.||||||||..|.|||||.|||
BPUM_1464___y 194 TTGCAGCAACGATCATTTCTGCTTTTCTAGGTGAATACATTGATGCAGTT 243
BSNT_02576___ 244 GCGATTATTGCGATTGTGTTTGTGAATGGCATACTCGGTTTCTTTCAAGA 293
||.|||.|.||||||||..|..|.|||||..|.|||||.||.|.||||||
BPUM_1464___y 244 GCCATTGTAGCGATTGTTCTCATTAATGGAGTGCTCGGCTTTTATCAAGA 293
BSNT_02576___ 294 AAGGCGTGCTGAGCAATCTCTTCAGGCTTTAAAAGAGCTTTCAACACCGC 343
..|.||.||.||..||||.|||||.||..||||.||..|.|||||.||||
BPUM_1464___y 294 GCGCCGGGCGGAAAAATCCCTTCAAGCGCTAAAGGAATTATCAACCCCGC 343
BSNT_02576___ 344 ATGT-----CATGGCACTCAG--AGAAGGAAGCTGGACAAAGATTCCTTC 386
|||| ||.|| || |.||.||| ||||..||||||||.||
BPUM_1464___y 344 ATGTGTATGCAAGG-----AGAAATAATGAA--TGGATCAAGATTCCGTC 386
BSNT_02576___ 387 TAAGGAACTGGTGCCGGGTGATATTGTGAAATTTACGAGCGGGGACAGAA 436
|||..|.||.|||||.||.|||||||||||||||.|.||.||.|||.|||
BPUM_1464___y 387 TAAACATCTTGTGCCAGGGGATATTGTGAAATTTTCAAGTGGAGACCGAA 436
BSNT_02576___ 437 TTGGCGCAGACGTTCGAATTGTTGAAGCAAGAAGCCTTGAAATAGAAGAA 486
||||.||.||..||.||.|..|.|||.|||..|||||.|||||.||.||.
BPUM_1464___y 437 TTGGGGCGGATATTAGATTACTAGAAACAAAGAGCCTGGAAATCGAGGAG 486
BSNT_02576___ 487 TCAGCGCTGACCGGGGAATCAATCCCGGTTGTGAAGCATGCTGATAAA-- 534
||.||.||.||.||.|||||.|||||.|..||.||.||.|| ||
BPUM_1464___y 487 TCTGCTCTCACTGGCGAATCCATCCCAGCAGTCAAACACGC-----AAGT 531
BSNT_02576___ 535 -----TTGAAAAAACCGGATGTTTCACTTGGCGATATTACCAATATGGCA 579
||..|..|||| ||||.||.|||||.|||.|.||.||.|||||.
BPUM_1464___y 532 CCGCTTTCTAGCAACC--ATGTCTCGCTTGGTGATTTGACGAACATGGCC 579
BSNT_02576___ 580 TTTATGGGTACGATTGTGACCCGCGGCAGCGGTGTGGGGGTTGTCGTCGG 629
||||||||.|||.||||.||..|.||.|||||.|||||.||||||.|.||
BPUM_1464___y 580 TTTATGGGGACGCTTGTCACTAGAGGAAGCGGCGTGGGCGTTGTCATTGG 629
BSNT_02576___ 630 GACAGGAATGAATACGGCTATGGGGAAAATTGCCGACATGCTTGAATCGG 679
.|||||.||||||||.||.|||||..|||||||.|.||||||.||..|.|
BPUM_1464___y 630 TACAGGGATGAATACAGCGATGGGACAAATTGCTGGCATGCTGGATGCAG 679
BSNT_02576___ 680 CAGGGACAT-TGTCAACCCCGCTGCAAAGAAGACTGGAGCAGCTCGGGAA 728
|||||| || ||..|||.||||||||||||.|.||.||.|||||.|||||
BPUM_1464___y 680 CAGGGA-ATATGGAAACACCGCTGCAAAGACGTCTCGAACAGCTTGGGAA 728
BSNT_02576___ 729 GATTTTGATTGTTGTTGCATTGCTTTTGACCGTACTTGTCGTTGCTGTCG 778
.||..|.|||||.|.|||.||..||||.||.||.||.||.||||.|.|.|
BPUM_1464___y 729 AATCCTCATTGTGGCTGCTTTATTTTTAACGGTGCTCGTTGTTGTTCTTG 778
BSNT_02576___ 779 GTGTTATTCAGGGTCATGATCTGTA-CAGTATGTTTTTAGCAGGTGTCTC 827
|.|||.|.||.||.||||||.|||| || ||||||..|.||.||.||.||
BPUM_1464___y 779 GAGTTGTGCAAGGACATGATTTGTATCA-TATGTTCCTGGCGGGAGTATC 827
BSNT_02576___ 828 GTTAGCGGTAGCTGCTATTCCGGAGGGGCTGCCGGCGATTGTGACAGTGG 877
..|.||.||.|||||.|||||.||.||.||.||.||||||||.||.||.|
BPUM_1464___y 828 ACTTGCAGTTGCTGCCATTCCTGAAGGCCTACCTGCGATTGTCACCGTCG 877
BSNT_02576___ 878 CGCTTTCGCTTGGTGTACAGCGGATGATTAAACAAAAATCCATTGTTAGA 927
|.|||||.||.||.||.|||||||||||.|||||||||||.|||||.|||
BPUM_1464___y 878 CACTTTCACTAGGCGTGCAGCGGATGATCAAACAAAAATCGATTGTCAGA 927
BSNT_02576___ 928 AAGCTTCCTGCTGTTGAAACGCTTGGGTGTGCGTCTATCATTTGTTCAGA 977
|||||.||.||.||.||.||.|||||.||||||||.||||||||||||||
BPUM_1464___y 928 AAGCTCCCGGCGGTGGAGACTCTTGGCTGTGCGTCGATCATTTGTTCAGA 977
BSNT_02576___ 978 TAAAACAGGGACAATGACCCAAAACAAAATGACGGTGACACATGTCTGGT 1027
|||||||||.||.|||||.|||||.||||||||.|||||.|||||.|||
BPUM_1464___y 978 TAAAACAGGAACCATGACGCAAAATAAAATGACTGTGACCCATGTATGG- 1026
BSNT_02576___ 1028 CCGGAGGG-AAAACATGGAGAGTGGCAGGGGCCGGCTATGAACC------ 1070
.|.||||| |||||.||||...|..|.||..|.||||||||.||
BPUM_1464___y 1027 GCAGAGGGCAAAACGTGGAATATTTCTGGTACGGGCTATGAGCCATCTGG 1076
BSNT_02576___ 1071 -GAAAGGAAGCTTCACACTAAACGAAAAAGAGATCAATGTCAATG----- 1114
|| .|||||..|.|||| ||||.| .||||.|||
BPUM_1464___y 1077 TGA-------TTTCACCTTGAACG-----GAGAAC-TTGTCCATGTAGAC 1113
BSNT_02576___ 1115 -AACAT--AAGCCGCTTCAGCAGATGCTTCTGTTCGGAGCGCTTTGTAAC 1161
||||| |||| ||.||..||.||.|.||.|.|||.|||||||||||.
BPUM_1464___y 1114 AAACATCCAAGC--CTGCAAAAGGTGTTACTATACGGTGCGCTTTGTAAT 1161
BSNT_02576___ 1162 AACTCCAATATTG-AGAAAAGAGACGGCGAATATG-TGCTTGACGGAGAT 1209
|..||.|..||.| .||||| |||.|||||| ||| .||||||.||.|||
BPUM_1464___y 1162 ACATCGACCATCGTTGAAAA-AGATGGCGAA-ATGAGGCTTGATGGTGAT 1209
BSNT_02576___ 1210 CCGACAGAGGGAGCGCTGCTCACCGCGGCAAGAAAAGGCGGTTTTTCAAA 1259
|||||||||||.||.||.||||||||.|||.|.||||..||||||.||.|
BPUM_1464___y 1210 CCGACAGAGGGGGCACTTCTCACCGCAGCACGTAAAGCGGGTTTTACAGA 1259
BSNT_02576___ 1260 GGAGTTTGTTGAATCAAACTACCGG-------GTGATCGAAGAATTTCCG 1302
|.|.||..|.|||.|| || |||.|.|||||.|||||.
BPUM_1464___y 1260 GCAATTCATCGAAGCA-------GGATTTCACGTGGTAGAAGAGTTTCCT 1302
BSNT_02576___ 1303 TTTGATTCTGCACGGAAAATGATGACTGTCATCGTAGA---GGATCAAGA 1349
||||||||.|.|.|.||.||||||.|.|||.||||.|| |.|||||
BPUM_1464___y 1303 TTTGATTCAGAAAGAAAGATGATGTCAGTCGTCGTCGAAACGAATCAA-- 1350
BSNT_02576___ 1350 CAGAAAGCGCTATATCATTACAAAAGGTGCACCGGATGTACTGATGCAGC 1399
|.|.||||.||..|||||.|||||||||||||.|||||.||.|||.|.|
BPUM_1464___y 1351 -AAAGAGCGGTACGTCATTGCAAAAGGTGCACCTGATGTCCTAATGAACC 1399
BSNT_02576___ 1400 GATCTTCCCG-TATTTATTATG-ACGGC------TCAGCGGCTCTTTTT- 1440
| ||||.| .| |||.||| ||||| .||||| ||.||||
BPUM_1464___y 1400 G---TTCCAGCCA--TATCATGCACGGCGGCCGTACAGCG--TCATTTTC 1442
BSNT_02576___ 1441 ------TCAAATGAAAGAAAAGCAGAAACAGAGGC-GGTATT--AAGACA 1481
|||.|.|.| |||||||||||| |..||| |||
BPUM_1464___y 1443 AACCACTCATAGGCA--------AGAAACAGAGGCTGCGATTCAAAG--- 1481
BSNT_02576___ 1482 TTTGGCATCACAGGCGCTCAGAACGATAGCGGTCGCCTACAGGCCGATAA 1531
|||.|||..|||.||||||||||||||.||..|.||.|| .|.||
BPUM_1464___y 1482 TTTAGCAAGACAAGCGCTCAGAACGATCGCCATTGCGTA------TAAAA 1525
BSNT_02576___ 1532 AAGCAGG------CGAAA----CACCGTCAATGGAGCAGGCGGAAAAAGA 1571
|||..|| ||||| |||| ||..|..|||||||.||||
BPUM_1464___y 1526 AAGTTGGTCTGACCGAAACCATCACC-TCTGTCCAGCAGGCTGAAA---- 1570
BSNT_02576___ 1572 CCTG----ACCATGCTT---GGCCTTTCAGGTATCATTGATCCCCCGCGG 1614
||| |.||| || ||.||...|||.||.||.||||||||.||.
BPUM_1464___y 1571 -CTGATTTAACAT--TTATCGGGCTAGAAGGCATGATCGATCCCCCTCGT 1617
BSNT_02576___ 1615 CCGGAAGTCAGACAGGCGATAAAAGAATGCCGTGAAGCAGGAATTAAGAC 1664
||.|||||.||||..|||||.|||||.|||.|.||.||.||.||.||.||
BPUM_1464___y 1618 CCTGAAGTGAGACGAGCGATTAAAGAGTGCAGGGATGCGGGTATAAAAAC 1667
BSNT_02576___ 1665 CGTTATGATAACAGGTGATCATGTAGAAACCGCTAAAGCGATAGCGAAAG 1714
.||.|||||.|||||.||||||||.|||||.||.||||||||.|||||||
BPUM_1464___y 1668 AGTCATGATTACAGGAGATCATGTGGAAACAGCCAAAGCGATTGCGAAAG 1717
BSNT_02576___ 1715 ACTTGCGCCTCCTTCCGAAAAGC--GGCAAAATCATGGACGGCAA----- 1757
|||||.||||..|.|| ||||| ||.||..|..|.|||||.||
BPUM_1464___y 1718 ACTTGAGCCTTTTACC--AAAGCAAGGAAAGGTGCTCGACGGAAAAGCGC 1765
BSNT_02576___ 1758 --GAT--GCTGAATGAACTTTCTCAAGAAGAGCTTTCTCATGTGGTGGAG 1803
||| |.|||.||| || ||||||||...||...||..||.
BPUM_1464___y 1766 TGGATCAGATGAGTGA-------CA--AAGAGCTTGAGCAAACGGCTGAA 1806
BSNT_02576___ 1804 GATGTTTATGTATTTGCCCGCGTTTCCCCTGAACATAAACTAAAAATCGT 1853
.||||.||.||.|||||.||.||.||.||.||.|||||.||.|.|||.||
BPUM_1464___y 1807 AATGTATACGTCTTTGCACGGGTATCACCGGAGCATAAGCTGAGAATTGT 1856
BSNT_02576___ 1854 AAAAGCCTATCAGGAGAACGGGCATATTGTGGCGATGACGGGAGACGGCG 1903
.||.||||||||..|.||.||.||||||||.||||||||.||.|||||.|
BPUM_1464___y 1857 GAAGGCCTATCAAAAAAATGGACATATTGTAGCGATGACAGGTGACGGGG 1906
BSNT_02576___ 1904 TCAATGATGCTCCTGCCATTAAACAAGCTGATATCGGCGTCTCTATGGGC 1953
||||||||||.|||||.|||||.|||||.||||||||..|||||||||||
BPUM_1464___y 1907 TCAATGATGCGCCTGCAATTAAGCAAGCAGATATCGGTATCTCTATGGGC 1956
BSNT_02576___ 1954 ATTACCGGGACAGATGTGGCCAAAGAAGCATCATCTCTTGTTCTCGCAGA 2003
||.||.||.|||||.||.||.||.|||||.||.||||||.||.|....||
BPUM_1464___y 1957 ATCACTGGAACAGACGTAGCAAAGGAAGCGTCCTCTCTTATTTTACTTGA 2006
BSNT_02576___ 2004 TGATAATTTTGCGACGATTAAATCAGCGATAAAAGAAGGCAGGAACATCT 2053
|||.||.||||||||.||||||||.||.||.|||||||||.|.||.||.|
BPUM_1464___y 2007 TGACAACTTTGCGACCATTAAATCGGCTATTAAAGAAGGCCGAAATATTT 2056
BSNT_02576___ 2054 ACGAAAATATCAGGAAGTTTATCAGATACCTGTTGGCGTCTAACGTCGGA 2103
|.|||||.|||.|.||||||.||.|.||..||.|.||.||.||.||.||.
BPUM_1464___y 2057 ATGAAAACATCCGTAAGTTTGTCCGTTATTTGCTCGCATCAAATGTGGGG 2106
BSNT_02576___ 2104 GAAATCCTTGTCATGCTGTTTGCGATGCTGCTCGCCCTTCCTTTACCGCT 2153
|||||..|.||.|||||||||||||||||.||.||.|||||..|.||.||
BPUM_1464___y 2107 GAAATTTTGGTTATGCTGTTTGCGATGCTTCTAGCGCTTCCGCTTCCTCT 2156
BSNT_02576___ 2154 CGTTCCGATTCAGATTTTGTGGGTCAACTTGGTGACGGACGGATTGCCGG 2203
||||||.|||||.|||||.|||||.|||.|.||.||.||.||..|.||||
BPUM_1464___y 2157 CGTTCCTATTCAAATTTTATGGGTTAACCTCGTCACAGATGGTCTCCCGG 2206
BSNT_02576___ 2204 CAATGGCGCTCGGCATGGATCAGCCGGAAGGAGACGTCATGAAGCGCAAG 2253
|.||||||||.|||||||||.||||.|||||.||.||||||||..|.|||
BPUM_1464___y 2207 CGATGGCGCTTGGCATGGATAAGCCAGAAGGCGATGTCATGAAAAGGAAG 2256
BSNT_02576___ 2254 CCCCGTCATCCGAAAGAAGGGGTATTTGCCCGCAAG--CTAGGATGGAAG 2301
||..|..||..||||||.|||.|.|||||..| || ||.||.||||||
BPUM_1464___y 2257 CCAAGGAATATGAAAGAGGGGATTTTTGCTAG--AGGTCTCGGCTGGAAG 2304
BSNT_02576___ 2302 GTCGTTTCCAGAGGATTTTTAATCGGAGTTGCCACTATTTTAGCGTTTAT 2351
||.||.||.||||||||..|.||.|||.||||.||..|||||||.|||||
BPUM_1464___y 2305 GTTGTATCTAGAGGATTCCTCATTGGACTTGCGACCCTTTTAGCATTTAT 2354
BSNT_02576___ 2352 CATTGTATACCACCGCAATCCGGAAAACTTAGCT----TATGCCCAGACG 2397
..||||.||.|||||..|||| |||| .|.|| |||||.|||||.
BPUM_1464___y 2355 GTTTGTGTATCACCGTGATCC---AAAC-AATCTGCCATATGCGCAGACT 2400
BSNT_02576___ 2398 ATCGCGTTTGCCACATTGGTTCTCGCTCAGCTTATTCACGTGTTTGACTG 2447
.|.||.|||...||..|.||..|.||.|||||.|||||.||.||||||||
BPUM_1464___y 2401 GTTGCATTTAGTACGCTTGTGTTGGCGCAGCTCATTCATGTATTTGACTG 2450
BSNT_02576___ 2448 CCGCAGCGAAACTTC--TGTTTTCTCTAGA----AATCCGTTTCAAAACC 2491
||||||.|||...|| |.||| || |||||.||....||.|
BPUM_1464___y 2451 CCGCAGTGAACGATCCATCTTT------GAGCGGAATCCATTCGGGAATC 2494
BSNT_02576___ 2492 TGTATTTAATCGGCGCGGTATTGTCATCCATTTTGCTGATGCTTGTAGTA 2541
|.||.||||||||.|||||.||||||||..||||..|||||.||||.||.
BPUM_1464___y 2495 TTTACTTAATCGGTGCGGTTTTGTCATCACTTTTATTGATGTTTGTGGTC 2544
BSNT_02576___ 2542 ATCTACTATCCGCCGCTTCAGCCGATTTTCCATACTGTAGCCATCACGCC 2591
||.||.|||||||||||.||||||||||||.|.||.||.||.||..|.||
BPUM_1464___y 2545 ATTTATTATCCGCCGCTACAGCCGATTTTCAAAACGGTGGCGATTGCACC 2594
BSNT_02576___ 2592 GGGGGACTGGATGCTCGTCATCGGTATGTCCGCCATCCCTACTTTTTTGC 2641
....||.|||.|..|..|||||||||||||.||..|.||.||||||||.|
BPUM_1464___y 2595 AATTGATTGGCTATTGATCATCGGTATGTCTGCACTGCCAACTTTTTTAC 2644
BSNT_02576___ 2642 TGGCGGGGTCACTTTTAACAAGAAAAAAATAA 2673
||||.||.||||||||.|||||||||||||||
BPUM_1464___y 2645 TGGCAGGATCACTTTTGACAAGAAAAAAATAA 2676
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