Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02571 and BPUM_1461

See Amino acid alignment / Visit BSNT_02571 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_02571___ylnE.1.24716.seq
#    -bsequence dna-align/BPUM_1461___cbiX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02571___ylnE-BPUM_1461___cbiX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02571___ylnE-BPUM_1461___cbiX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02571___ylnE
# 2: BPUM_1461___cbiX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 893
# Identity:     511/893 (57.2%)
# Similarity:   511/893 (57.2%)
# Gaps:         214/893 (24.0%)
# Score: 1349.0
# 
#
#=======================================

BSNT_02571___      1 ATGAAACAAGCAATTTTATATGTCGGCCACGGCAGCCGGGTCAAAAAAGC     50
                     |||||||||||..|..|.|||||.||.||.||.|||.||||.|||.||||
BPUM_1461___c      1 ATGAAACAAGCTGTCCTTTATGTTGGACATGGAAGCAGGGTAAAAGAAGC     50

BSNT_02571___     51 GCAGCAAGAAGCCGCA-GCCTTTTTGGAAGGATGCAAGGCTCACATCTCT     99
                     .||..|..||||  || ..|||||       |||.||       |.||.|
BPUM_1461___c     51 ACAAGATAAAGC--CATTTCTTTT-------ATGAAA-------AGCTGT     84

BSNT_02571___    100 GTGCCA---------------GTACAAGAAATCAGCTTTTTAGAGCTTCA    134
                     .|||||               .|||||||.||..|.||||||||.||   
BPUM_1461___c     85 ATGCCATTAGTAGAAGCCGATATACAAGAGATTTGTTTTTTAGAACT---    131

BSNT_02571___    135 GGAGCCGACA---------ATTG-AGACAGGATTTGAAGCATGTGTGAAG    174
                           ||||         ||.| ||| |||.||||||||.||||||||.
BPUM_1461___c    132 ------GACAGCCCCTTCTATAGAAGA-AGGTTTTGAAGCTTGTGTGAAA    174

BSNT_02571___    175 CAAGGCGCCACTCATATCGCAGTGGTGCCTCTGCTTCTTTTAACAGCTGC    224
                     .||||.||.||.||.||.||..|.||.||.||.||.||||||||.|||..
BPUM_1461___c    175 AAAGGAGCGACACACATTGCGATCGTCCCGCTCCTCCTTTTAACTGCTAT    224

BSNT_02571___    225 GCATGC-AAAACATGATATTCCGGAAGAAATTGCCCGTGCTGCATCT---    270
                     |||||| |||.|| ||||||||.|..||.||||       .|.|..|   
BPUM_1461___c    225 GCATGCTAAATCA-GATATTCCAGTTGAGATTG-------AGAAAGTACA    266

BSNT_02571___    271 ----CGATATCCGTCAGTCCGCA--TTTCATACGGAAAGCCGATCGGGAT    314
                         |||||.|||..|||  |.|  |..||||||||||.||.||||||.|
BPUM_1461___c    267 AAAACGATACCCGCAAGT--GAAGGTCACATACGGAAAACCAATCGGGGT    314

BSNT_02571___    315 TGACGAAGAAGTAGTCAA-------GGCTGTATATCACCGAATGAAAGAC    357
                     ..||.||||||| |.|||       .||||.|      .||||..||||.
BPUM_1461___c    315 CAACCAAGAAGT-GACAAAAGCAGTTGCTGCA------AGAATTGAAGAA    357

BSNT_02571___    358 ATAGGTGTTCCATATGAAAATGCCAGAGTG---GTACTC-----ATCGGA    399
                     ..|||      ||||  .||.||.|||..|   |.|.||     ||.||.
BPUM_1461___c    358 GCAGG------ATAT--CAAGGCGAGAAAGCACGGATTCTTTTAATTGGC    399

BSNT_02571___    400 AGGGGAAGTTCAGATCCTGATGTCAAAAGAGACGTAACTGGTATTGCTAA    449
                     .|.|||||.||.|||||.|||||.||..||||.||...|||.|||||   
BPUM_1461___c    400 CGTGGAAGCTCTGATCCAGATGTGAAGCGAGATGTGTATGGCATTGC---    446

BSNT_02571___    450 TCTTCTTCAGGAAATGATTCCAGTCAAG------------------GAAG    481
                              ||  |.|||    ||||.|                  ||||
BPUM_1461___c    447 ---------GG--ACGAT----GTCAGGCGCCTGCTGCCTCTTGCAGAAG    481

BSNT_02571___    482 TCATTCCGTGCTTTTTGACAGCATGCGGCCCTAATTACAAAGAGGTTTTT    531
                     ||.|.||.||.|||.|.||||||||.|..||.||||||..|||.|||.|.
BPUM_1461___c    482 TCCTGCCATGTTTTATTACAGCATGTGAACCAAATTACCGAGATGTTCTG    531

BSNT_02571___    532 TCAGAACTTAA-AAAAGATGACGGCATAACAA----CC--TTTATC--GT    572
                     .| |.|.|||| |..||||||.|        |    ||  ||||||  ||
BPUM_1461___c    532 GC-GCAATTAACAGTAGATGATG--------ATGTTCCTGTTTATCTTGT    572

BSNT_02571___    573 TCCATATTTGCTCTTTACGGGTATGCTGATGAATGAAATCGAA-------    615
                     |||.||..||.|.||||||||||||.|.|||||.||.||.|||       
BPUM_1461___c    573 TCCTTACCTGTTGTTTACGGGTATGTTAATGAAAGAGATTGAAAATGAAG    622

BSNT_02571___    616 ---------CGAGAGGTTCAGAAATTAAAAGCTCATAATCCGAACGTCTA    656
                              ||||||    |||...||||||.|    .||||  .||.|.
BPUM_1461___c    623 CGGCTCAGGCGAGAG----AGAGGCTAAAAGAT----GTCCG--GGTATG    662

BSNT_02571___    657 CCTCTCTTCCTATATCGGTTTTCATCCTCATGTGAAAAAC-GCAT-TTTT    704
                     ||      ..|||||.||.||||||||.||||| ||||.| ||.| |.||
BPUM_1461___c    663 CC------GGTATATTGGCTTTCATCCGCATGT-AAAAGCAGCTTATATT    705

BSNT_02571___    705 GAACCGTGTGAGAGAAACTGCGGCAAATTCTGAGGGACAA----------    744
                     ||| ||||||..||||||       .|||.|.|   ||||          
BPUM_1461___c    706 GAA-CGTGTGCAAGAAAC-------CATTTTAA---ACAAAGATGATGCG    744

BSNT_02571___    745 TTTGATTTTGATGGAGATTCATATGCTTCCGCTGCACATTAG-    786
                     |||.|||||.|.|||||.....||||||||..|.||..|| | 
BPUM_1461___c    745 TTTCATTTTCAAGGAGAAAGCCATGCTTCCAGTCCATCTT-GA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02571 and BPUM_1461

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
