Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02568 and BPUM_1459

See Amino acid alignment / Visit BSNT_02568 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_02568___cysC.1.24716.seq
#    -bsequence dna-align/BPUM_1459___cysC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02568___cysC-BPUM_1459___cysC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02568___cysC-BPUM_1459___cysC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02568___cysC
# 2: BPUM_1459___cysC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 618
# Identity:     440/618 (71.2%)
# Similarity:   440/618 (71.2%)
# Gaps:          48/618 ( 7.8%)
# Score: 1523.0
# 
#
#=======================================

BSNT_02568___      1 GTGA-CAAATCGCG---ATATTGTATGGCATGAAGCCTCTATCACAAAAG     46
                     .||| |||    ||   ||||.||.||||||||..|.|||||.||||||.
BPUM_1459___c      1 ATGAGCAA----CGAACATATCGTGTGGCATGATTCATCTATTACAAAAA     46

BSNT_02568___     47 AAGAGTATCAGCAAAAAAACAAGCATAAAAGCTCCATTCTCTGGCTGACA     96
                     |.||.|||||.||.||||||||.|||||||||..||||.|.|||||.|||
BPUM_1459___c     47 ATGAATATCAACAGAAAAACAATCATAAAAGCGGCATTATTTGGCTCACA     96

BSNT_02568___     97 GGGTTAAGCGGCTCAGGCAAATCAACCATTGCCAACGCCGCTGCGAGAGA    146
                     ||..||||.||.|||||.||||||||.|||||.||.||.||.||.|||||
BPUM_1459___c     97 GGTCTAAGTGGATCAGGTAAATCAACAATTGCAAATGCAGCGGCTAGAGA    146

BSNT_02568___    147 ATTGTTTGAGCAAGGCTACCAAGTCATTGTGCTGGACGGGGATAATATCC    196
                     ..|||||||.|||||.||.|||||.|..||.||.||.||.||||||.|.|
BPUM_1459___c    147 GCTGTTTGAACAAGGTTATCAAGTGACCGTTCTTGATGGTGATAATGTGC    196

BSNT_02568___    197 GTCACGGCCTAAATAGGGATCTTGGTTTTTCTGATGAAGACCGAAAAGAA    246
                     |.||.||..|.||||..|||.|.||.|||||.|||||.|||.|||||||.
BPUM_1459___c    197 GGCATGGATTGAATAAAGATTTAGGGTTTTCAGATGATGACAGAAAAGAG    246

BSNT_02568___    247 AACATCCGCCGGATCGGAGAGGTGGCGAAGCTTTTTGTTCAGCAGGGAAC    296
                     |||||||||||.||||||||.||||||||..|.||||||.||||.|||||
BPUM_1459___c    247 AACATCCGCCGCATCGGAGAAGTGGCGAAATTGTTTGTTGAGCAAGGAAC    296

BSNT_02568___    297 CATTGTGATTACTGCTTTTATCTCTCCTTTCCGCGAGGACAG--GCA---    341
                     .||.||.||.||.||||||||.|||||.||.|..||.|||.|  |||   
BPUM_1459___c    297 GATAGTTATCACGGCTTTTATTTCTCCATTTCAAGAAGACCGCCGCATTG    346

BSNT_02568___    342 ----ACAGGTTCGCGAGCTT-GTGGAAGCGGGCGAATTTAATGAAGTCTA    386
                         ||||          || ||||||||.||.||||||.|.|||||.|.
BPUM_1459___c    347 TCAGACAG----------TTAGTGGAAGCAGGGGAATTTCACGAAGTGTT    386

BSNT_02568___    387 CATTAAATGCGACCTTGA---TATTTGTGAACAAAGAGATCCGAAAGGAC    433
                     ..|.|||||.|| .||||   ||  ||.|||.||.|.||||| |||||..
BPUM_1459___c    387 TGTGAAATGTGA-TTTGAACGTA--TGCGAAGAACGTGATCC-AAAGGGG    432

BSNT_02568___    434 TT-TACAAAAAAGCAAGAAACGGAGAGATTCCGTTCTTTACAGGAATTGA    482
                     || ||.||||||||.|||||.||.||.|||||.||.||.||.||||||||
BPUM_1459___c    433 TTATATAAAAAAGCTAGAAATGGCGAAATTCCATTTTTCACCGGAATTGA    482

BSNT_02568___    483 TTCACCTTATGAAGAACCGGAAGCTCCAGAGCTCGTTCTTGATTCAGGAC    532
                     ||||||.||||||||.||.|.|||.||.|||||||||||.|||.||||  
BPUM_1459___c    483 TTCACCATATGAAGAGCCAGCAGCACCTGAGCTCGTTCTAGATACAGG--    530

BSNT_02568___    533 AGCATGA------CCGTGAAGCGTGTAAAAATCAGCTGATCGAGTTTGTT    576
                         |||      .|||||||.||..|||.|.|..||..|.||.|.|||.
BPUM_1459___c    531 ----TGAATTATCGCGTGAAGAGTCCAAACAACGTCTTGTTGATTATGTA    576

BSNT_02568___    577 AAACAAAAATTGAGCTGA    594
                     |||.|||||..||..|.|
BPUM_1459___c    577 AAAGAAAAAGCGAAATAA    594


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.